Wall clock time and date at job start Tue Mar 31 2020 14:12:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34777 * 119.99913 * 2 1 4 4 O 1.21695 * 119.99668 * 183.36668 * 3 2 1 5 5 C 1.46703 * 119.99901 * 3.36124 * 3 2 1 6 6 C 1.36328 * 125.83089 * 173.23233 * 5 3 2 7 7 C 1.41316 * 106.63673 * 179.97438 * 6 5 3 8 8 C 1.48469 * 126.61160 * 179.97438 * 7 6 5 9 9 C 1.39303 * 120.12216 * 180.02562 * 8 7 6 10 10 C 1.38025 * 119.88229 * 179.97438 * 9 8 7 11 11 C 1.38315 * 120.11974 * 359.97438 * 10 9 8 12 12 C 1.38312 * 120.23577 * 359.97438 * 11 10 9 13 13 C 1.38023 * 120.11903 * 0.02562 * 12 11 10 14 14 C 1.36252 * 106.77901 * 0.24012 * 7 6 5 15 15 O 1.33852 * 108.58963 * 359.60708 * 14 7 6 16 16 C 1.46506 * 119.99932 * 179.97438 * 2 1 3 17 17 C 1.53943 * 113.74251 * 38.74151 * 16 2 1 18 18 N 1.47810 * 86.03712 * 222.08520 * 17 16 2 19 19 C 1.36932 * 134.45897 * 204.64444 * 18 17 16 20 20 H 1.07998 * 120.00329 * 174.50801 * 19 18 17 21 21 C 1.38814 * 120.00029 * 354.51744 * 19 18 17 22 22 N 1.31625 * 119.99772 * 5.01061 * 21 19 18 23 23 Si 1.86796 * 120.00339 * 185.01261 * 21 19 18 24 24 H 1.48510 * 109.47223 * 94.99295 * 23 21 19 25 25 H 1.48501 * 109.47264 * 214.99132 * 23 21 19 26 26 H 1.48502 * 109.47125 * 334.99630 * 23 21 19 27 27 C 1.47582 * 91.05215 * 24.55051 * 18 17 16 28 28 H 1.08998 * 109.47067 * 84.01684 * 1 2 3 29 29 H 1.09000 * 109.46808 * 204.01403 * 1 2 3 30 30 H 1.09002 * 109.47180 * 324.01479 * 1 2 3 31 31 H 1.08007 * 126.67839 * 359.95971 * 6 5 3 32 32 H 1.08001 * 120.05564 * 359.97438 * 9 8 7 33 33 H 1.08010 * 119.93713 * 179.72009 * 10 9 8 34 34 H 1.07997 * 119.87851 * 179.97438 * 11 10 9 35 35 H 1.08002 * 119.93651 * 179.97438 * 12 11 10 36 36 H 1.08005 * 120.06068 * 180.02562 * 13 12 11 37 37 H 1.08005 * 125.70723 * 179.72061 * 14 7 6 38 38 H 1.09001 * 112.94028 * 170.33437 * 16 2 1 39 39 H 1.09009 * 113.76772 * 336.35008 * 17 16 2 40 40 H 1.08998 * 113.77001 * 107.74587 * 17 16 2 41 41 H 0.97002 * 119.99910 * 180.02562 * 22 21 19 42 42 H 1.09004 * 113.76848 * 221.15689 * 27 18 17 43 43 H 1.08991 * 113.77252 * 89.75249 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3543 1.1681 -0.0619 5 6 1.4072 2.4366 0.0745 6 6 1.9655 3.6726 0.2129 7 6 0.8979 4.5981 0.2389 8 6 1.0074 6.0725 0.3754 9 6 -0.1411 6.8608 0.3856 10 6 -0.0336 8.2309 0.5133 11 6 1.2115 8.8214 0.6316 12 6 2.3550 8.0433 0.6232 13 6 2.2589 6.6723 0.4960 14 6 -0.2515 3.8762 0.1206 15 8 0.0673 2.5803 0.0172 16 6 2.1975 -1.2688 0.0006 17 6 1.5556 -2.3555 -0.8808 18 7 1.8610 -3.2879 0.2247 19 6 2.0639 -4.6393 0.3112 20 1 2.3656 -5.0812 1.2493 21 6 1.8817 -5.4415 -0.8070 22 7 1.6108 -4.8937 -1.9727 23 14 2.0211 -7.2982 -0.6573 24 1 0.6701 -7.8815 -0.4571 25 1 2.6201 -7.8513 -1.8985 26 1 2.8838 -7.6379 0.5028 27 6 1.8620 -2.1776 1.1970 28 1 -0.3633 0.1071 -1.0220 29 1 -0.3633 -0.9387 0.4182 30 1 -0.3634 0.8316 0.6038 31 1 3.0187 3.9000 0.2882 32 1 -1.1138 6.4006 0.2937 33 1 -0.9233 8.8434 0.5167 34 1 1.2911 9.8938 0.7309 35 1 3.3249 8.5095 0.7155 36 1 3.1524 6.0656 0.4899 37 1 -1.2524 4.2818 0.1099 38 1 3.2670 -1.1420 -0.1680 39 1 0.4887 -2.2099 -1.0506 40 1 2.1091 -2.5619 -1.7968 41 1 1.4831 -5.4542 -2.7540 42 1 2.6599 -2.2423 1.9369 43 1 0.8856 -1.9796 1.6388 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044378525.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:12:51 Heat of formation + Delta-G solvation = 56.585154 kcal Electronic energy + Delta-G solvation = -26195.709536 eV Core-core repulsion = 22402.214437 eV Total energy + Delta-G solvation = -3793.495098 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.80113 -41.14120 -39.86116 -39.26469 -36.14418 -34.86136 -34.03454 -32.14990 -31.63141 -30.29901 -29.36624 -28.03354 -26.66843 -25.85324 -24.32588 -24.05333 -22.95360 -21.83922 -20.96226 -20.28442 -18.97224 -18.81339 -17.96352 -17.60817 -17.35229 -17.11339 -16.84538 -16.10732 -16.00394 -15.71197 -15.68380 -15.24438 -14.67426 -14.47462 -14.18234 -14.09204 -13.96436 -13.83220 -13.73613 -13.55072 -13.35181 -13.23927 -12.93313 -12.82609 -12.58796 -12.13277 -12.08998 -11.98584 -11.83271 -11.58849 -11.46673 -11.37687 -10.89774 -10.18102 -9.82335 -9.65609 -9.03007 -8.98455 -7.95697 -5.29764 -0.06330 0.13897 0.53231 1.44933 1.47077 1.51849 1.55927 1.57198 1.98738 2.05776 2.47250 3.03916 3.20351 3.32189 3.42667 3.55252 3.76203 3.91570 4.00841 4.14588 4.17906 4.26853 4.29587 4.32095 4.42101 4.45863 4.59919 4.62186 4.68319 4.77419 4.81532 4.84084 4.99306 5.05443 5.14057 5.16771 5.18241 5.23293 5.43993 5.52483 5.60852 5.65527 5.66807 5.84235 5.86301 6.11754 6.26626 6.86103 6.88035 7.54675 8.47788 9.21933 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.045033 B = 0.002060 C = 0.002015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 621.619549 B =13589.015126 C =13892.476867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.589 5.589 3 C 0.593 3.407 4 O -0.566 6.566 5 C -0.086 4.086 6 C -0.110 4.110 7 C -0.168 4.168 8 C -0.028 4.028 9 C -0.120 4.120 10 C -0.120 4.120 11 C -0.130 4.130 12 C -0.125 4.125 13 C -0.132 4.132 14 C 0.028 3.972 15 O -0.150 6.150 16 C 0.112 3.888 17 C 0.164 3.836 18 N -0.635 5.635 19 C -0.237 4.237 20 H 0.088 0.912 21 C -0.065 4.065 22 N -0.952 5.952 23 Si 0.983 3.017 24 H -0.284 1.284 25 H -0.295 1.295 26 H -0.267 1.267 27 C 0.117 3.883 28 H 0.067 0.933 29 H 0.078 0.922 30 H 0.101 0.899 31 H 0.156 0.844 32 H 0.148 0.852 33 H 0.149 0.851 34 H 0.143 0.857 35 H 0.137 0.863 36 H 0.119 0.881 37 H 0.258 0.742 38 H 0.099 0.901 39 H 0.040 0.960 40 H 0.038 0.962 41 H 0.251 0.749 42 H 0.055 0.945 43 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.066 28.749 5.841 30.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.318 5.318 3 C 0.382 3.618 4 O -0.447 6.447 5 C -0.138 4.138 6 C -0.131 4.131 7 C -0.169 4.169 8 C -0.028 4.028 9 C -0.138 4.138 10 C -0.138 4.138 11 C -0.147 4.147 12 C -0.143 4.143 13 C -0.150 4.150 14 C -0.042 4.042 15 O -0.045 6.045 16 C 0.007 3.993 17 C 0.038 3.962 18 N -0.363 5.363 19 C -0.365 4.365 20 H 0.106 0.894 21 C -0.258 4.258 22 N -0.600 5.600 23 Si 0.810 3.190 24 H -0.211 1.211 25 H -0.221 1.221 26 H -0.191 1.191 27 C -0.009 4.009 28 H 0.086 0.914 29 H 0.097 0.903 30 H 0.119 0.881 31 H 0.174 0.826 32 H 0.166 0.834 33 H 0.167 0.833 34 H 0.161 0.839 35 H 0.155 0.845 36 H 0.137 0.863 37 H 0.274 0.726 38 H 0.117 0.883 39 H 0.058 0.942 40 H 0.057 0.943 41 H 0.059 0.941 42 H 0.074 0.926 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -7.614 28.117 5.677 29.678 hybrid contribution 0.483 -1.211 -0.299 1.337 sum -7.131 26.906 5.378 28.350 Atomic orbital electron populations 1.22158 0.76970 1.04215 1.03363 1.47916 1.08628 1.04794 1.70511 1.17064 0.86018 0.82124 0.76545 1.90831 1.13869 1.86760 1.53264 1.21450 0.81473 0.94982 1.15851 1.22001 1.01197 0.90253 0.99669 1.19300 0.92709 0.93825 1.11081 1.18183 0.94469 0.89188 1.00969 1.21424 0.98012 0.94167 1.00175 1.21438 0.98644 0.94679 0.99010 1.21557 0.92511 1.01098 0.99571 1.21347 0.99971 0.93246 0.99735 1.21358 0.97048 0.95778 1.00833 1.25407 1.01293 0.79209 0.98314 1.84283 1.22199 1.28173 1.69822 1.23514 0.97086 0.80355 0.98338 1.22493 0.96909 0.84360 0.92455 1.45984 1.82448 1.02529 1.05301 1.19392 1.39021 0.81299 0.96749 0.89445 1.25704 1.02111 1.02766 0.95261 1.70018 1.55439 1.35211 0.99331 0.85003 0.77652 0.79315 0.77006 1.21128 1.22148 1.19112 1.23073 0.99480 0.85261 0.93107 0.91449 0.90305 0.88052 0.82639 0.83413 0.83332 0.83946 0.84524 0.86344 0.72614 0.88252 0.94217 0.94341 0.94053 0.92637 0.92146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.96 8.33 127.77 1.06 3.02 16 2 N -0.59 -19.97 3.09 -832.99 -2.58 -22.54 16 3 C 0.59 20.54 7.64 86.45 0.66 21.20 16 4 O -0.57 -23.48 16.34 -4.33 -0.07 -23.55 16 5 C -0.09 -2.35 6.76 24.04 0.16 -2.19 16 6 C -0.11 -2.72 10.00 22.58 0.23 -2.50 16 7 C -0.17 -3.20 6.07 -20.26 -0.12 -3.32 16 8 C -0.03 -0.48 5.88 -20.04 -0.12 -0.60 16 9 C -0.12 -1.46 9.57 22.48 0.22 -1.24 16 10 C -0.12 -1.26 10.03 22.24 0.22 -1.04 16 11 C -0.13 -1.49 10.04 22.31 0.22 -1.26 16 12 C -0.13 -1.77 10.03 22.24 0.22 -1.54 16 13 C -0.13 -2.33 9.59 22.48 0.22 -2.12 16 14 C 0.03 0.40 11.51 67.36 0.77 1.17 16 15 O -0.15 -3.10 7.25 -4.04 -0.03 -3.13 16 16 C 0.11 4.58 4.41 46.75 0.21 4.79 16 17 C 0.16 7.93 6.87 86.44 0.59 8.52 16 18 N -0.64 -33.09 3.70 -716.72 -2.65 -35.75 16 19 C -0.24 -13.37 10.70 84.03 0.90 -12.48 16 20 H 0.09 4.71 7.83 -2.91 -0.02 4.68 16 21 C -0.07 -3.73 5.50 84.86 0.47 -3.26 16 22 N -0.95 -57.70 11.48 21.65 0.25 -57.45 16 23 Si 0.98 45.80 29.56 68.60 2.03 47.83 16 24 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 25 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 26 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 27 C 0.12 4.82 8.43 86.49 0.73 5.55 16 28 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 29 H 0.08 2.17 6.13 -2.39 -0.01 2.16 16 30 H 0.10 2.18 5.40 -2.39 -0.01 2.16 16 31 H 0.16 3.84 7.45 -2.91 -0.02 3.82 16 32 H 0.15 0.89 7.04 -2.91 -0.02 0.87 16 33 H 0.15 0.76 8.06 -2.91 -0.02 0.74 16 34 H 0.14 0.95 8.06 -2.91 -0.02 0.92 16 35 H 0.14 1.42 8.06 -2.91 -0.02 1.40 16 36 H 0.12 2.09 7.13 -2.91 -0.02 2.07 16 37 H 0.26 0.97 7.29 -2.91 -0.02 0.94 16 38 H 0.10 4.48 7.20 -2.39 -0.02 4.47 16 39 H 0.04 1.87 6.69 -2.38 -0.02 1.85 16 40 H 0.04 2.13 7.31 -2.39 -0.02 2.11 16 41 H 0.25 14.71 8.31 -92.71 -0.77 13.94 16 42 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 43 H 0.06 2.25 6.93 -2.39 -0.02 2.24 16 Total: -1.00 -74.70 359.26 4.63 -70.07 By element: Atomic # 1 Polarization: 10.78 SS G_CDS: 1.04 Total: 11.82 kcal Atomic # 6 Polarization: 6.07 SS G_CDS: 6.64 Total: 12.71 kcal Atomic # 7 Polarization: -110.77 SS G_CDS: -4.98 Total: -115.75 kcal Atomic # 8 Polarization: -26.58 SS G_CDS: -0.10 Total: -26.68 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 2.03 Total: 47.83 kcal Total: -74.70 4.63 -70.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044378525.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.653 kcal (2) G-P(sol) polarization free energy of solvation -74.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.067 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds