Wall clock time and date at job start Tue Mar 31 2020 14:59:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86808 * 119.99984 * 2 1 4 4 H 1.48495 * 109.46929 * 274.98454 * 3 2 1 5 5 H 1.48506 * 109.46690 * 34.98475 * 3 2 1 6 6 H 1.48500 * 109.47145 * 154.98350 * 3 2 1 7 7 C 1.38808 * 120.00168 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99874 * 172.71763 * 7 2 1 9 9 N 1.36941 * 120.00106 * 352.71750 * 7 2 1 10 10 C 1.46643 * 125.32742 * 5.24410 * 9 7 2 11 11 C 1.53682 * 108.00772 * 180.81663 * 10 9 7 12 12 H 1.09002 * 113.05754 * 253.80622 * 11 10 9 13 13 C 1.53725 * 109.34279 * 127.55742 * 11 10 9 14 14 N 1.46666 * 107.94410 * 266.25271 * 13 11 10 15 15 C 1.34776 * 125.33900 * 180.54254 * 14 13 11 16 16 O 1.21648 * 120.00050 * 5.75206 * 15 14 13 17 17 C 1.47170 * 119.99973 * 185.74913 * 15 14 13 18 18 C 1.38588 * 120.72709 * 37.94153 * 17 15 14 19 19 C 1.38923 * 121.36360 * 179.97438 * 18 17 15 20 20 C 1.35827 * 122.59547 * 359.97438 * 19 18 17 21 21 C 1.40838 * 120.55833 * 359.97438 * 20 19 18 22 22 C 1.38426 * 134.89720 * 179.97438 * 21 20 19 23 23 N 1.33888 * 107.84340 * 179.97438 * 22 21 20 24 24 H 0.97002 * 125.02094 * 180.02562 * 23 22 21 25 25 N 1.39982 * 109.96534 * 0.02562 * 23 22 21 26 26 C 1.31482 * 109.01477 * 359.97438 * 25 23 22 27 27 C 1.46772 * 109.32325 * 0.80600 * 14 13 11 28 28 C 1.54164 * 106.52718 * 341.09028 * 27 14 13 29 29 H 1.09001 * 113.83395 * 265.68200 * 28 27 14 30 30 C 1.46741 * 125.33015 * 185.22431 * 9 7 2 31 31 H 0.97002 * 119.99769 * 0.02562 * 1 2 3 32 32 H 1.08999 * 109.75812 * 61.17482 * 10 9 7 33 33 H 1.08998 * 109.76141 * 300.45870 * 10 9 7 34 34 H 1.09000 * 109.77544 * 146.62744 * 13 11 10 35 35 H 1.09003 * 109.77113 * 25.87418 * 13 11 10 36 36 H 1.08005 * 119.31635 * 359.97438 * 18 17 15 37 37 H 1.07999 * 118.69607 * 180.26575 * 19 18 17 38 38 H 1.08006 * 119.71798 * 179.97438 * 20 19 18 39 39 H 1.07999 * 126.07761 * 0.02562 * 22 21 20 40 40 H 1.09004 * 110.02838 * 100.50982 * 27 14 13 41 41 H 1.08997 * 110.02879 * 221.92939 * 27 14 13 42 42 H 1.08995 * 110.01169 * 42.35839 * 30 9 7 43 43 H 1.09008 * 110.00722 * 280.99105 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3923 2.1073 -1.3947 5 1 1.5042 2.6200 0.8028 6 1 3.5965 1.4121 0.5921 7 6 2.0103 -1.2021 0.0005 8 1 3.0838 -1.2059 -0.1180 9 7 1.3339 -2.3832 0.1514 10 6 -0.1246 -2.5235 0.2116 11 6 -0.4510 -4.0125 0.4066 12 1 -0.8429 -4.4852 -0.4941 13 6 -1.3893 -4.1743 1.6135 14 7 -0.5634 -4.4439 2.7951 15 6 -1.0309 -4.6535 4.0416 16 8 -2.2291 -4.7312 4.2368 17 6 -0.0918 -4.7886 5.1667 18 6 1.0538 -4.0112 5.2301 19 6 1.9489 -4.1274 6.2862 20 6 1.7618 -4.9984 7.3115 21 6 0.6286 -5.8340 7.3434 22 6 0.1516 -6.8008 8.2118 23 7 -1.0001 -7.2675 7.7135 24 1 -1.5467 -7.9550 8.1253 25 7 -1.2991 -6.6169 6.5107 26 6 -0.3496 -5.7465 6.2470 27 6 0.8525 -4.4433 2.4083 28 6 0.8897 -4.6403 0.8798 29 1 1.0106 -5.6791 0.5724 30 6 1.9551 -3.7066 0.2777 31 1 -0.4850 0.8401 -0.0004 32 1 -0.5676 -2.1677 -0.7186 33 1 -0.5159 -1.9475 1.0501 34 1 -2.0706 -5.0076 1.4418 35 1 -1.9589 -3.2570 1.7632 36 1 1.2547 -3.3002 4.4423 37 1 2.8258 -3.4970 6.2944 38 1 2.4883 -5.0506 8.1090 39 1 0.6241 -7.1210 9.1286 40 1 1.3122 -3.4919 2.6761 41 1 1.3747 -5.2628 2.9020 42 1 2.8195 -3.6514 0.9394 43 1 2.2588 -4.0713 -0.7037 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001048972566.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:59:30 Heat of formation + Delta-G solvation = 104.759125 kcal Electronic energy + Delta-G solvation = -27703.282056 eV Core-core repulsion = 23944.168689 eV Total energy + Delta-G solvation = -3759.113367 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.38405 -40.04709 -38.09390 -36.83796 -34.82981 -32.42667 -32.06949 -31.13152 -30.07694 -29.40438 -28.86709 -25.67463 -25.46338 -24.63656 -23.09609 -21.94813 -21.34448 -20.06740 -19.24785 -19.08455 -18.21440 -17.38764 -16.88274 -16.38918 -15.95440 -15.47581 -15.06946 -14.89218 -14.55778 -14.28230 -14.04758 -13.68093 -13.42360 -13.15341 -12.81084 -12.65406 -12.26917 -12.01774 -11.93888 -11.83130 -11.72429 -11.40673 -11.22712 -10.88826 -10.79130 -10.65277 -10.41781 -10.34192 -10.07997 -10.05679 -9.81557 -9.62585 -9.49372 -8.96510 -8.56283 -8.20568 -7.74393 -6.82265 -5.72850 -3.05464 0.26994 1.69609 2.11730 2.46763 3.07622 3.31522 3.40228 3.45876 3.48121 3.81137 4.08254 4.33260 4.49973 4.70661 4.86602 4.93764 5.03778 5.06853 5.21689 5.29243 5.32763 5.50627 5.52651 5.67427 5.70387 5.77957 5.84701 5.95663 6.04867 6.20469 6.22980 6.25362 6.35309 6.40549 6.46185 6.60004 6.62527 6.68445 6.75998 6.84166 6.85637 7.44233 7.56853 7.61794 7.82904 7.89118 8.27146 8.51791 9.22095 9.83171 10.47411 11.38828 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.017073 B = 0.003478 C = 0.003194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1639.665291 B = 8048.173603 C = 8762.963857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.004 4.004 3 Si 0.908 3.092 4 H -0.290 1.290 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.232 4.232 8 H 0.078 0.922 9 N -0.602 5.602 10 C 0.183 3.817 11 C -0.123 4.123 12 H 0.090 0.910 13 C 0.122 3.878 14 N -0.604 5.604 15 C 0.575 3.425 16 O -0.534 6.534 17 C -0.110 4.110 18 C -0.033 4.033 19 C -0.160 4.160 20 C -0.023 4.023 21 C -0.216 4.216 22 C 0.086 3.914 23 N -0.431 5.431 24 H 0.443 0.557 25 N -0.282 5.282 26 C 0.137 3.863 27 C 0.111 3.889 28 C -0.112 4.112 29 H 0.089 0.911 30 C 0.146 3.854 31 H 0.253 0.747 32 H 0.042 0.958 33 H 0.053 0.947 34 H 0.059 0.941 35 H 0.073 0.927 36 H 0.143 0.857 37 H 0.130 0.870 38 H 0.126 0.874 39 H 0.189 0.811 40 H 0.081 0.919 41 H 0.066 0.934 42 H 0.039 0.961 43 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.988 -15.000 15.344 21.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.201 4.201 3 Si 0.739 3.261 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.206 1.206 7 C -0.360 4.360 8 H 0.096 0.904 9 N -0.329 5.329 10 C 0.059 3.941 11 C -0.142 4.142 12 H 0.108 0.892 13 C 0.000 4.000 14 N -0.337 5.337 15 C 0.364 3.636 16 O -0.412 6.412 17 C -0.116 4.116 18 C -0.055 4.055 19 C -0.180 4.180 20 C -0.043 4.043 21 C -0.226 4.226 22 C -0.071 4.071 23 N -0.131 5.131 24 H 0.288 0.712 25 N -0.108 5.108 26 C -0.021 4.021 27 C -0.012 4.012 28 C -0.132 4.132 29 H 0.107 0.893 30 C 0.019 3.981 31 H 0.063 0.937 32 H 0.060 0.940 33 H 0.071 0.929 34 H 0.077 0.923 35 H 0.091 0.909 36 H 0.160 0.840 37 H 0.148 0.852 38 H 0.144 0.856 39 H 0.206 0.794 40 H 0.099 0.901 41 H 0.085 0.915 42 H 0.057 0.943 43 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 2.091 -15.337 15.084 21.613 hybrid contribution 0.925 0.889 0.520 1.384 sum 3.016 -14.449 15.604 21.479 Atomic orbital electron populations 1.69973 1.04906 1.25111 1.56435 1.24814 0.95649 0.97658 1.01997 0.86161 0.78728 0.83764 0.77467 1.21728 1.21662 1.20604 1.19009 0.91147 0.82446 1.43378 0.90381 1.44218 1.01491 1.01082 1.86088 1.21130 0.84650 0.87085 1.01277 1.23149 0.94033 1.00747 0.96309 0.89165 1.21815 0.93439 1.00892 0.83863 1.48125 1.08427 1.69874 1.07243 1.17555 0.87709 0.77072 0.81257 1.90799 1.15724 1.50745 1.83909 1.19737 0.97212 1.00031 0.94641 1.21566 0.90509 0.95703 0.97755 1.20411 1.00969 1.01433 0.95139 1.20260 0.94010 0.92640 0.97386 1.19584 1.00527 1.04597 0.97926 1.22726 0.88934 0.96164 0.99255 1.46475 1.17653 1.31001 1.17994 0.71237 1.77757 1.21531 1.13129 0.98344 1.21513 0.91804 0.94532 0.94202 1.22266 0.81933 1.01718 0.95256 1.22954 0.97198 0.99282 0.93725 0.89255 1.21165 0.93837 0.86214 0.96885 0.93698 0.93952 0.92853 0.92293 0.90857 0.83970 0.85207 0.85631 0.79371 0.90132 0.91544 0.94298 0.96328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.49 10.30 55.49 0.57 -25.92 16 2 C 0.00 -0.12 5.48 -17.43 -0.10 -0.22 16 3 Si 0.91 21.67 29.56 -169.99 -5.02 16.64 16 4 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.23 -6.21 10.24 -15.06 -0.15 -6.36 16 8 H 0.08 2.02 7.84 -52.48 -0.41 1.60 16 9 N -0.60 -14.59 3.37 -171.94 -0.58 -15.17 16 10 C 0.18 4.29 4.76 -3.61 -0.02 4.28 16 11 C -0.12 -2.24 4.02 -88.61 -0.36 -2.59 16 12 H 0.09 1.50 8.14 -51.93 -0.42 1.07 16 13 C 0.12 2.24 6.24 -3.57 -0.02 2.22 16 14 N -0.60 -10.93 3.31 -173.53 -0.57 -11.50 16 15 C 0.57 11.14 7.49 -12.63 -0.09 11.04 16 16 O -0.53 -12.12 17.27 5.24 0.09 -12.03 16 17 C -0.11 -1.82 5.56 -102.74 -0.57 -2.39 16 18 C -0.03 -0.46 8.29 -39.20 -0.32 -0.78 16 19 C -0.16 -1.74 9.83 -40.19 -0.39 -2.14 16 20 C -0.02 -0.22 10.02 -39.46 -0.40 -0.61 16 21 C -0.22 -2.47 6.34 -105.21 -0.67 -3.13 16 22 C 0.09 0.67 12.08 -16.59 -0.20 0.47 16 23 N -0.43 -4.02 7.18 30.86 0.22 -3.80 16 24 H 0.44 2.29 8.96 -182.69 -1.64 0.65 16 25 N -0.28 -4.36 12.67 34.35 0.44 -3.93 16 26 C 0.14 2.15 7.36 -80.98 -0.60 1.55 16 27 C 0.11 1.79 4.55 -3.29 -0.01 1.77 16 28 C -0.11 -1.84 4.19 -88.24 -0.37 -2.21 16 29 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 30 C 0.15 2.79 6.37 -3.43 -0.02 2.77 16 31 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 32 H 0.04 1.11 7.56 -51.93 -0.39 0.72 16 33 H 0.05 1.41 6.42 -51.93 -0.33 1.08 16 34 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.07 1.47 7.44 -51.93 -0.39 1.08 16 36 H 0.14 2.01 5.70 -52.48 -0.30 1.71 16 37 H 0.13 1.11 8.06 -52.49 -0.42 0.68 16 38 H 0.13 0.77 8.06 -52.48 -0.42 0.35 16 39 H 0.19 0.46 8.06 -52.49 -0.42 0.04 16 40 H 0.08 1.41 6.12 -51.93 -0.32 1.09 16 41 H 0.07 0.93 7.62 -51.93 -0.40 0.54 16 42 H 0.04 0.71 7.94 -51.93 -0.41 0.30 16 43 H 0.02 0.36 8.14 -51.92 -0.42 -0.06 16 LS Contribution 348.43 15.07 5.25 5.25 Total: -1.00 -36.37 348.43 -10.59 -46.96 By element: Atomic # 1 Polarization: 6.51 SS G_CDS: -6.68 Total: -0.17 kcal Atomic # 6 Polarization: 7.96 SS G_CDS: -4.30 Total: 3.67 kcal Atomic # 7 Polarization: -60.40 SS G_CDS: 0.07 Total: -60.32 kcal Atomic # 8 Polarization: -12.12 SS G_CDS: 0.09 Total: -12.03 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -36.37 -10.59 -46.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048972566.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.717 kcal (2) G-P(sol) polarization free energy of solvation -36.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.958 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds