Wall clock time and date at job start Tue Mar 31 2020 14:59:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86808 * 119.99984 * 2 1 4 4 H 1.48495 * 109.46929 * 274.98454 * 3 2 1 5 5 H 1.48506 * 109.46690 * 34.98475 * 3 2 1 6 6 H 1.48500 * 109.47145 * 154.98350 * 3 2 1 7 7 C 1.38808 * 120.00168 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99874 * 172.71763 * 7 2 1 9 9 N 1.36941 * 120.00106 * 352.71750 * 7 2 1 10 10 C 1.46643 * 125.32742 * 5.24410 * 9 7 2 11 11 C 1.53682 * 108.00772 * 180.81663 * 10 9 7 12 12 H 1.09002 * 113.05754 * 253.80622 * 11 10 9 13 13 C 1.53725 * 109.34279 * 127.55742 * 11 10 9 14 14 N 1.46666 * 107.94410 * 266.25271 * 13 11 10 15 15 C 1.34776 * 125.33900 * 180.54254 * 14 13 11 16 16 O 1.21648 * 120.00050 * 5.75206 * 15 14 13 17 17 C 1.47170 * 119.99973 * 185.74913 * 15 14 13 18 18 C 1.38588 * 120.72709 * 37.94153 * 17 15 14 19 19 C 1.38923 * 121.36360 * 179.97438 * 18 17 15 20 20 C 1.35827 * 122.59547 * 359.97438 * 19 18 17 21 21 C 1.40838 * 120.55833 * 359.97438 * 20 19 18 22 22 C 1.38426 * 134.89720 * 179.97438 * 21 20 19 23 23 N 1.33888 * 107.84340 * 179.97438 * 22 21 20 24 24 H 0.97002 * 125.02094 * 180.02562 * 23 22 21 25 25 N 1.39982 * 109.96534 * 0.02562 * 23 22 21 26 26 C 1.31482 * 109.01477 * 359.97438 * 25 23 22 27 27 C 1.46772 * 109.32325 * 0.80600 * 14 13 11 28 28 C 1.54164 * 106.52718 * 341.09028 * 27 14 13 29 29 H 1.09001 * 113.83395 * 265.68200 * 28 27 14 30 30 C 1.46741 * 125.33015 * 185.22431 * 9 7 2 31 31 H 0.97002 * 119.99769 * 0.02562 * 1 2 3 32 32 H 1.08999 * 109.75812 * 61.17482 * 10 9 7 33 33 H 1.08998 * 109.76141 * 300.45870 * 10 9 7 34 34 H 1.09000 * 109.77544 * 146.62744 * 13 11 10 35 35 H 1.09003 * 109.77113 * 25.87418 * 13 11 10 36 36 H 1.08005 * 119.31635 * 359.97438 * 18 17 15 37 37 H 1.07999 * 118.69607 * 180.26575 * 19 18 17 38 38 H 1.08006 * 119.71798 * 179.97438 * 20 19 18 39 39 H 1.07999 * 126.07761 * 0.02562 * 22 21 20 40 40 H 1.09004 * 110.02838 * 100.50982 * 27 14 13 41 41 H 1.08997 * 110.02879 * 221.92939 * 27 14 13 42 42 H 1.08995 * 110.01169 * 42.35839 * 30 9 7 43 43 H 1.09008 * 110.00722 * 280.99105 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3923 2.1073 -1.3947 5 1 1.5042 2.6200 0.8028 6 1 3.5965 1.4121 0.5921 7 6 2.0103 -1.2021 0.0005 8 1 3.0838 -1.2059 -0.1180 9 7 1.3339 -2.3832 0.1514 10 6 -0.1246 -2.5235 0.2116 11 6 -0.4510 -4.0125 0.4066 12 1 -0.8429 -4.4852 -0.4941 13 6 -1.3893 -4.1743 1.6135 14 7 -0.5634 -4.4439 2.7951 15 6 -1.0309 -4.6535 4.0416 16 8 -2.2291 -4.7312 4.2368 17 6 -0.0918 -4.7886 5.1667 18 6 1.0538 -4.0112 5.2301 19 6 1.9489 -4.1274 6.2862 20 6 1.7618 -4.9984 7.3115 21 6 0.6286 -5.8340 7.3434 22 6 0.1516 -6.8008 8.2118 23 7 -1.0001 -7.2675 7.7135 24 1 -1.5467 -7.9550 8.1253 25 7 -1.2991 -6.6169 6.5107 26 6 -0.3496 -5.7465 6.2470 27 6 0.8525 -4.4433 2.4083 28 6 0.8897 -4.6403 0.8798 29 1 1.0106 -5.6791 0.5724 30 6 1.9551 -3.7066 0.2777 31 1 -0.4850 0.8401 -0.0004 32 1 -0.5676 -2.1677 -0.7186 33 1 -0.5159 -1.9475 1.0501 34 1 -2.0706 -5.0076 1.4418 35 1 -1.9589 -3.2570 1.7632 36 1 1.2547 -3.3002 4.4423 37 1 2.8258 -3.4970 6.2944 38 1 2.4883 -5.0506 8.1090 39 1 0.6241 -7.1210 9.1286 40 1 1.3122 -3.4919 2.6761 41 1 1.3747 -5.2628 2.9020 42 1 2.8195 -3.6514 0.9394 43 1 2.2588 -4.0713 -0.7037 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001048972566.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:59:29 Heat of formation + Delta-G solvation = 78.743619 kcal Electronic energy + Delta-G solvation = -27704.410173 eV Core-core repulsion = 23944.168689 eV Total energy + Delta-G solvation = -3760.241484 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.25208 -41.46711 -39.57952 -37.80270 -36.53736 -34.13249 -33.16650 -32.27474 -31.33393 -31.10450 -29.85325 -27.39115 -27.03545 -25.79842 -24.50617 -22.82431 -22.52567 -21.76517 -20.76506 -20.20210 -19.13166 -18.80887 -18.33869 -17.72105 -17.21487 -16.74476 -16.50432 -16.00130 -15.88086 -15.65418 -15.47260 -15.14265 -14.67456 -14.47190 -14.20457 -14.08119 -13.63942 -13.55149 -13.20462 -13.17011 -12.95719 -12.79372 -12.75496 -12.61841 -12.45477 -11.96618 -11.90323 -11.83383 -11.58030 -11.50195 -11.36806 -11.28153 -10.86756 -10.62173 -9.86535 -9.67344 -8.83134 -8.63489 -7.82281 -5.15901 -0.58471 0.84584 1.16207 1.48530 1.49888 1.59256 1.74935 1.90585 2.02514 2.52990 2.82702 3.22746 3.32295 3.37928 3.52260 3.64588 3.80072 3.92315 3.96349 4.14606 4.23676 4.28501 4.32369 4.45554 4.49302 4.52490 4.56150 4.67514 4.73255 4.83478 4.91133 4.95294 5.07356 5.11353 5.25768 5.36865 5.40357 5.41597 5.53932 5.57499 5.65511 5.79773 5.89916 6.24469 6.29056 6.47400 6.60938 7.09350 7.14306 7.84175 8.46503 9.28443 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.017073 B = 0.003478 C = 0.003194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1639.665291 B = 8048.173603 C = 8762.963857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C -0.066 4.066 3 Si 0.973 3.027 4 H -0.290 1.290 5 H -0.301 1.301 6 H -0.262 1.262 7 C -0.235 4.235 8 H 0.089 0.911 9 N -0.622 5.622 10 C 0.198 3.802 11 C -0.111 4.111 12 H 0.114 0.886 13 C 0.125 3.875 14 N -0.606 5.606 15 C 0.569 3.431 16 O -0.586 6.586 17 C -0.166 4.166 18 C -0.014 4.014 19 C -0.191 4.191 20 C 0.019 3.981 21 C -0.249 4.249 22 C 0.141 3.859 23 N -0.420 5.420 24 H 0.460 0.540 25 N -0.354 5.354 26 C 0.113 3.887 27 C 0.117 3.883 28 C -0.095 4.095 29 H 0.131 0.869 30 C 0.141 3.859 31 H 0.243 0.757 32 H 0.003 0.997 33 H 0.011 0.989 34 H 0.071 0.929 35 H 0.041 0.959 36 H 0.127 0.873 37 H 0.155 0.845 38 H 0.177 0.823 39 H 0.257 0.743 40 H 0.063 0.937 41 H 0.094 0.906 42 H 0.054 0.946 43 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.562 -17.543 18.351 26.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.259 4.259 3 Si 0.802 3.198 4 H -0.217 1.217 5 H -0.228 1.228 6 H -0.186 1.186 7 C -0.364 4.364 8 H 0.107 0.893 9 N -0.348 5.348 10 C 0.073 3.927 11 C -0.130 4.130 12 H 0.133 0.867 13 C 0.002 3.998 14 N -0.338 5.338 15 C 0.361 3.639 16 O -0.467 6.467 17 C -0.172 4.172 18 C -0.036 4.036 19 C -0.210 4.210 20 C -0.001 4.001 21 C -0.259 4.259 22 C -0.018 4.018 23 N -0.120 5.120 24 H 0.308 0.692 25 N -0.181 5.181 26 C -0.043 4.043 27 C -0.005 4.005 28 C -0.114 4.114 29 H 0.149 0.851 30 C 0.016 3.984 31 H 0.052 0.948 32 H 0.021 0.979 33 H 0.029 0.971 34 H 0.089 0.911 35 H 0.060 0.940 36 H 0.145 0.855 37 H 0.173 0.827 38 H 0.194 0.806 39 H 0.272 0.728 40 H 0.081 0.919 41 H 0.112 0.888 42 H 0.072 0.928 43 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 5.706 -17.926 18.073 26.087 hybrid contribution -0.121 1.571 -0.224 1.592 sum 5.585 -16.355 17.849 24.845 Atomic orbital electron populations 1.70220 1.06477 1.25001 1.58336 1.25642 0.96401 1.01052 1.02826 0.85137 0.78086 0.79500 0.77095 1.21698 1.22760 1.18642 1.19449 0.91810 0.83565 1.41618 0.89329 1.44499 1.01948 1.02519 1.85820 1.20746 0.84455 0.90027 0.97480 1.22990 0.95466 0.97375 0.97199 0.86749 1.21688 0.93741 0.99871 0.84476 1.48223 1.09138 1.69463 1.07001 1.18233 0.87776 0.75782 0.82117 1.90733 1.17949 1.53315 1.84738 1.19547 0.98551 1.03898 0.95254 1.21589 0.89978 0.93882 0.98127 1.20648 1.01615 1.03556 0.95216 1.20815 0.93139 0.89202 0.96948 1.20104 1.00983 1.06929 0.97875 1.23787 0.86599 0.92335 0.99127 1.46529 1.18381 1.30592 1.16538 0.69213 1.77663 1.23410 1.15412 1.01659 1.21694 0.93201 0.94391 0.95059 1.22274 0.80923 1.01891 0.95395 1.23020 0.94452 1.00632 0.93341 0.85117 1.21376 0.94807 0.84240 0.97948 0.94754 0.97889 0.97128 0.91108 0.94012 0.85484 0.82700 0.80603 0.72762 0.91920 0.88791 0.92779 0.95045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.16 10.30 21.65 0.22 -57.93 16 2 C -0.07 -3.76 5.48 84.86 0.46 -3.30 16 3 Si 0.97 45.62 29.56 68.60 2.03 47.65 16 4 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 5 H -0.30 -14.47 7.11 99.48 0.71 -13.76 16 6 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 7 C -0.24 -12.79 10.24 84.03 0.86 -11.93 16 8 H 0.09 4.52 7.84 -2.91 -0.02 4.50 16 9 N -0.62 -30.69 3.37 -697.89 -2.35 -33.04 16 10 C 0.20 9.83 4.76 86.58 0.41 10.24 16 11 C -0.11 -4.11 4.02 -9.49 -0.04 -4.15 16 12 H 0.11 3.72 8.14 -2.39 -0.02 3.70 16 13 C 0.13 4.88 6.24 86.59 0.54 5.42 16 14 N -0.61 -23.10 3.31 -821.16 -2.72 -25.82 16 15 C 0.57 23.65 7.49 86.59 0.65 24.30 16 16 O -0.59 -28.93 17.27 -4.18 -0.07 -29.00 16 17 C -0.17 -5.71 5.56 -18.65 -0.10 -5.81 16 18 C -0.01 -0.38 8.29 22.52 0.19 -0.19 16 19 C -0.19 -3.68 9.83 21.87 0.21 -3.47 16 20 C 0.02 0.28 10.02 22.35 0.22 0.50 16 21 C -0.25 -4.78 6.34 -20.24 -0.13 -4.91 16 22 C 0.14 1.41 12.08 84.42 1.02 2.43 16 23 N -0.42 -6.66 7.18 -56.29 -0.40 -7.07 16 24 H 0.46 3.42 8.96 -213.39 -1.91 1.51 16 25 N -0.35 -11.04 12.67 -45.22 -0.57 -11.61 16 26 C 0.11 3.53 7.36 43.75 0.32 3.85 16 27 C 0.12 3.77 4.55 86.72 0.39 4.16 16 28 C -0.10 -2.98 4.19 -9.25 -0.04 -3.02 16 29 H 0.13 3.15 8.14 -2.39 -0.02 3.13 16 30 C 0.14 5.22 6.37 86.65 0.55 5.77 16 31 H 0.24 14.66 8.31 -92.71 -0.77 13.89 16 32 H 0.00 0.16 7.56 -2.39 -0.02 0.14 16 33 H 0.01 0.61 6.42 -2.39 -0.02 0.59 16 34 H 0.07 2.57 8.14 -2.39 -0.02 2.55 16 35 H 0.04 1.86 7.44 -2.39 -0.02 1.85 16 36 H 0.13 3.77 5.70 -2.91 -0.02 3.76 16 37 H 0.16 2.13 8.06 -2.91 -0.02 2.11 16 38 H 0.18 0.82 8.06 -2.91 -0.02 0.80 16 39 H 0.26 -1.00 8.06 -2.91 -0.02 -1.02 16 40 H 0.06 2.25 6.12 -2.39 -0.01 2.24 16 41 H 0.09 2.52 7.62 -2.39 -0.02 2.50 16 42 H 0.05 1.86 7.94 -2.39 -0.02 1.84 16 43 H 0.03 1.12 8.14 -2.38 -0.02 1.10 16 Total: -1.00 -89.71 348.43 0.81 -88.90 By element: Atomic # 1 Polarization: 8.86 SS G_CDS: -0.85 Total: 8.01 kcal Atomic # 6 Polarization: 14.38 SS G_CDS: 5.53 Total: 19.91 kcal Atomic # 7 Polarization: -129.64 SS G_CDS: -5.82 Total: -135.47 kcal Atomic # 8 Polarization: -28.93 SS G_CDS: -0.07 Total: -29.00 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 2.03 Total: 47.65 kcal Total: -89.71 0.81 -88.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048972566.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.644 kcal (2) G-P(sol) polarization free energy of solvation -89.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.900 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds