Wall clock time and date at job start Tue Mar 31 2020 14:54:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86799 * 120.00284 * 2 1 4 4 H 1.48507 * 109.46907 * 274.98721 * 3 2 1 5 5 H 1.48495 * 109.46986 * 34.98365 * 3 2 1 6 6 H 1.48497 * 109.47010 * 154.98974 * 3 2 1 7 7 C 1.38816 * 119.99346 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99403 * 172.66816 * 7 2 1 9 9 N 1.36934 * 120.00604 * 352.66389 * 7 2 1 10 10 C 1.46775 * 125.33902 * 185.39666 * 9 7 2 11 11 C 1.53973 * 106.62501 * 161.51559 * 10 9 7 12 12 H 1.08993 * 113.01662 * 265.71693 * 11 10 9 13 13 C 1.54097 * 109.44523 * 138.17255 * 11 10 9 14 14 N 1.46746 * 106.63467 * 278.64370 * 13 11 10 15 15 C 1.34775 * 125.32747 * 161.59012 * 14 13 11 16 16 O 1.21789 * 119.99993 * 184.65267 * 15 14 13 17 17 C 1.41694 * 120.00498 * 4.64542 * 15 14 13 18 18 C 1.39193 * 125.87434 * 6.57003 * 17 15 14 19 19 C 1.38077 * 107.68137 * 180.02562 * 18 17 15 20 20 C 1.39508 * 107.56788 * 359.97438 * 19 18 17 21 21 C 1.40617 * 132.41401 * 180.02562 * 20 19 18 22 22 C 1.36296 * 119.16164 * 179.97438 * 21 20 19 23 23 C 1.39967 * 120.03451 * 0.06895 * 22 21 20 24 24 N 1.30645 * 120.99366 * 359.89067 * 23 22 21 25 25 N 1.37155 * 108.20339 * 359.97438 * 20 19 18 26 26 C 1.46635 * 109.34179 * 341.31588 * 14 13 11 27 27 C 1.53692 * 108.00741 * 1.06983 * 26 14 13 28 28 H 1.09001 * 112.55676 * 254.08731 * 27 26 14 29 29 C 1.46673 * 125.33714 * 5.43212 * 9 7 2 30 30 H 0.96998 * 119.99373 * 0.02562 * 1 2 3 31 31 H 1.08990 * 110.02898 * 42.22443 * 10 9 7 32 32 H 1.08999 * 110.02331 * 280.80491 * 10 9 7 33 33 H 1.08993 * 110.14687 * 159.29992 * 13 11 10 34 34 H 1.09002 * 109.95800 * 37.87873 * 13 11 10 35 35 H 1.08001 * 126.15357 * 0.04624 * 18 17 15 36 36 H 1.08004 * 126.21712 * 180.02562 * 19 18 17 37 37 H 1.08000 * 120.41956 * 359.97438 * 21 20 19 38 38 H 1.08000 * 119.98311 * 180.02562 * 22 21 20 39 39 H 1.08006 * 119.50276 * 179.97438 * 23 22 21 40 40 H 1.08998 * 109.75814 * 120.70997 * 26 14 13 41 41 H 1.09001 * 109.76479 * 241.42639 * 26 14 13 42 42 H 1.08999 * 109.76945 * 60.88862 * 29 9 7 43 43 H 1.09005 * 109.76708 * 300.13353 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.3924 2.1072 -1.3949 5 1 1.5045 2.6199 0.8027 6 1 3.5966 1.4119 0.5919 7 6 2.0102 -1.2023 -0.0005 8 1 3.0836 -1.2060 -0.1199 9 7 1.3339 -2.3834 0.1504 10 6 1.9552 -3.7069 0.2792 11 6 0.8881 -4.6374 0.8845 12 1 0.9561 -4.7146 1.9696 13 6 0.9301 -6.0008 0.1676 14 7 0.1717 -5.8435 -1.0788 15 6 0.2501 -6.6613 -2.1472 16 8 -0.3608 -6.3925 -3.1660 17 6 1.0434 -7.8337 -2.0855 18 6 1.6853 -8.3255 -0.9525 19 6 2.3493 -9.4806 -1.3149 20 6 2.1115 -9.6947 -2.6728 21 6 2.5291 -10.7010 -3.5617 22 6 2.1282 -10.6459 -4.8631 23 6 1.3122 -9.5963 -5.3009 24 7 0.9213 -8.6598 -4.4781 25 7 1.3104 -8.6808 -3.1325 26 6 -0.6897 -4.6612 -0.9774 27 6 -0.4496 -4.0149 0.3963 28 1 -1.2727 -4.1882 1.0895 29 6 -0.1249 -2.5243 0.2078 30 1 -0.4849 0.8401 -0.0004 31 1 2.8198 -3.6506 0.9404 32 1 2.2578 -4.0742 -0.7014 33 1 0.4689 -6.7669 0.7907 34 1 1.9619 -6.2722 -0.0554 35 1 1.6669 -7.8833 0.0327 36 1 2.9441 -10.1054 -0.6650 37 1 3.1597 -11.5075 -3.2175 38 1 2.4408 -11.4120 -5.5572 39 1 0.9998 -9.5608 -6.3342 40 1 -0.4379 -3.9531 -1.7669 41 1 -1.7347 -4.9576 -1.0676 42 1 -0.5669 -2.1652 -0.7216 43 1 -0.5177 -1.9521 1.0484 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049103024.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:54:05 Heat of formation + Delta-G solvation = 128.163369 kcal Electronic energy + Delta-G solvation = -27541.278644 eV Core-core repulsion = 23783.180162 eV Total energy + Delta-G solvation = -3758.098483 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.18510 -40.10509 -38.15186 -37.24928 -34.99503 -33.48271 -32.32307 -31.04771 -30.04480 -29.70311 -28.85201 -25.93667 -25.61617 -24.46670 -23.73749 -22.35788 -21.32266 -20.10590 -20.05768 -19.33195 -17.76315 -17.41013 -16.74874 -16.44810 -16.19415 -15.79059 -15.41478 -15.17232 -14.69784 -14.27929 -13.97501 -13.68259 -13.57863 -13.27391 -13.04231 -12.80299 -12.68790 -12.46756 -12.17281 -12.02950 -11.70445 -11.56814 -11.31445 -11.02249 -10.87159 -10.78041 -10.69279 -10.29289 -10.09897 -9.97460 -9.86290 -9.69938 -9.64121 -9.10347 -8.55863 -8.36426 -7.91089 -6.80228 -5.71440 -3.03254 0.23862 0.79954 1.71019 2.15203 3.00185 3.23998 3.41887 3.47269 3.49256 3.54873 4.07406 4.21830 4.34117 4.50839 4.61458 4.70390 4.80420 4.97113 5.03423 5.18480 5.26268 5.37618 5.43607 5.49253 5.53161 5.61977 5.71507 5.75703 5.76455 5.81509 5.94808 5.98094 6.16577 6.31093 6.34444 6.39574 6.53057 6.62893 6.67468 6.74250 6.87893 7.43822 7.55320 7.60638 7.75180 7.83089 8.28561 8.40548 9.24099 9.84856 10.49310 11.40696 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.022160 B = 0.002886 C = 0.002839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.233564 B = 9699.257563 C = 9859.127265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.007 4.007 3 Si 0.910 3.090 4 H -0.290 1.290 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.229 4.229 8 H 0.078 0.922 9 N -0.602 5.602 10 C 0.144 3.856 11 C -0.110 4.110 12 H 0.101 0.899 13 C 0.100 3.900 14 N -0.599 5.599 15 C 0.591 3.409 16 O -0.533 6.533 17 C -0.010 4.010 18 C -0.126 4.126 19 C -0.169 4.169 20 C -0.003 4.003 21 C -0.017 4.017 22 C -0.199 4.199 23 C 0.120 3.880 24 N -0.240 5.240 25 N -0.219 5.219 26 C 0.123 3.877 27 C -0.122 4.122 28 H 0.090 0.910 29 C 0.186 3.814 30 H 0.252 0.748 31 H 0.036 0.964 32 H 0.017 0.983 33 H 0.069 0.931 34 H 0.082 0.918 35 H 0.177 0.823 36 H 0.156 0.844 37 H 0.155 0.845 38 H 0.149 0.851 39 H 0.195 0.805 40 H 0.077 0.923 41 H 0.061 0.939 42 H 0.047 0.953 43 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.936 -24.735 -2.508 25.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.203 4.203 3 Si 0.741 3.259 4 H -0.217 1.217 5 H -0.216 1.216 6 H -0.206 1.206 7 C -0.357 4.357 8 H 0.095 0.905 9 N -0.328 5.328 10 C 0.018 3.982 11 C -0.130 4.130 12 H 0.119 0.881 13 C -0.023 4.023 14 N -0.332 5.332 15 C 0.381 3.619 16 O -0.411 6.411 17 C -0.128 4.128 18 C -0.150 4.150 19 C -0.195 4.195 20 C -0.115 4.115 21 C -0.044 4.044 22 C -0.222 4.222 23 C -0.073 4.073 24 N -0.048 5.048 25 N 0.019 4.981 26 C 0.001 3.999 27 C -0.142 4.142 28 H 0.108 0.892 29 C 0.061 3.939 30 H 0.063 0.937 31 H 0.054 0.946 32 H 0.034 0.966 33 H 0.087 0.913 34 H 0.100 0.900 35 H 0.194 0.806 36 H 0.174 0.826 37 H 0.172 0.828 38 H 0.167 0.833 39 H 0.211 0.789 40 H 0.095 0.905 41 H 0.079 0.921 42 H 0.065 0.935 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 2.833 -23.427 -3.425 23.845 hybrid contribution 0.967 0.100 -0.109 0.978 sum 3.800 -23.327 -3.534 23.898 Atomic orbital electron populations 1.69970 1.04887 1.25081 1.56774 1.24816 0.95708 0.97675 1.02091 0.86124 0.78699 0.83631 0.77476 1.21716 1.21620 1.20644 1.19030 0.91183 0.82502 1.43024 0.90462 1.44216 1.01459 1.01135 1.86030 1.21253 0.93965 0.86326 0.96689 1.23001 0.97148 0.93089 0.99766 0.88104 1.22432 0.96440 0.98093 0.85348 1.47866 1.43111 1.27477 1.14787 1.15242 0.81876 0.81929 0.82825 1.90895 1.46593 1.74394 1.29247 1.18964 1.10845 0.97500 0.85446 1.22174 0.98074 0.96534 0.98225 1.21064 1.06214 1.00205 0.92004 1.19477 1.02280 0.93796 0.95941 1.20897 0.95750 0.95763 0.91957 1.21451 1.02417 1.01228 0.97086 1.24162 0.93133 0.89941 1.00030 1.76219 1.18855 1.23081 0.86630 1.45440 1.30693 1.17019 1.04901 1.21980 0.93244 0.85947 0.98727 1.23142 0.96905 0.99645 0.94491 0.89220 1.21051 0.84730 0.86833 1.01306 0.93718 0.94561 0.96551 0.91331 0.89983 0.80608 0.82626 0.82758 0.83325 0.78862 0.90515 0.92094 0.93480 0.93123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.03 10.30 55.49 0.57 -26.46 16 2 C -0.01 -0.19 5.48 -17.43 -0.10 -0.28 16 3 Si 0.91 22.28 29.56 -169.99 -5.02 17.25 16 4 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 5 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 6 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.23 -6.43 10.24 -15.06 -0.15 -6.58 16 8 H 0.08 2.11 7.84 -52.48 -0.41 1.69 16 9 N -0.60 -15.30 3.38 -171.84 -0.58 -15.88 16 10 C 0.14 2.93 6.49 -3.38 -0.02 2.91 16 11 C -0.11 -1.76 4.16 -88.26 -0.37 -2.13 16 12 H 0.10 1.40 8.14 -51.93 -0.42 0.98 16 13 C 0.10 1.35 4.15 -3.34 -0.01 1.34 16 14 N -0.60 -10.26 3.30 -175.66 -0.58 -10.84 16 15 C 0.59 11.15 7.62 -14.94 -0.11 11.04 16 16 O -0.53 -12.06 16.81 5.11 0.09 -11.97 16 17 C -0.01 -0.15 6.80 -83.74 -0.57 -0.72 16 18 C -0.13 -1.51 9.02 -39.29 -0.35 -1.86 16 19 C -0.17 -1.72 10.92 -39.17 -0.43 -2.15 16 20 C 0.00 -0.04 6.80 -84.11 -0.57 -0.61 16 21 C -0.02 -0.13 10.11 -39.38 -0.40 -0.53 16 22 C -0.20 -1.37 10.04 -39.63 -0.40 -1.77 16 23 C 0.12 1.13 11.29 -17.41 -0.20 0.93 16 24 N -0.24 -3.60 11.33 30.61 0.35 -3.25 16 25 N -0.22 -3.36 4.01 -8.28 -0.03 -3.39 16 26 C 0.12 2.27 6.22 -3.61 -0.02 2.25 16 27 C -0.12 -2.19 4.01 -88.61 -0.36 -2.55 16 28 H 0.09 1.41 8.14 -51.93 -0.42 0.98 16 29 C 0.19 4.42 4.78 -3.57 -0.02 4.40 16 30 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 31 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.02 0.36 7.72 -51.93 -0.40 -0.04 16 33 H 0.07 0.73 7.38 -51.93 -0.38 0.34 16 34 H 0.08 1.02 5.98 -51.93 -0.31 0.71 16 35 H 0.18 1.67 4.41 -52.49 -0.23 1.44 16 36 H 0.16 1.02 8.06 -52.48 -0.42 0.60 16 37 H 0.15 0.62 8.06 -52.49 -0.42 0.19 16 38 H 0.15 0.46 8.06 -52.49 -0.42 0.04 16 39 H 0.19 1.03 8.06 -52.48 -0.42 0.61 16 40 H 0.08 1.68 7.29 -51.93 -0.38 1.30 16 41 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 42 H 0.05 1.26 6.85 -51.93 -0.36 0.91 16 43 H 0.05 1.32 7.28 -51.93 -0.38 0.95 16 LS Contribution 346.00 15.07 5.21 5.21 Total: -1.00 -37.42 346.00 -9.45 -46.87 By element: Atomic # 1 Polarization: 4.14 SS G_CDS: -5.37 Total: -1.23 kcal Atomic # 6 Polarization: 7.76 SS G_CDS: -4.08 Total: 3.68 kcal Atomic # 7 Polarization: -59.54 SS G_CDS: -0.28 Total: -59.82 kcal Atomic # 8 Polarization: -12.06 SS G_CDS: 0.09 Total: -11.97 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -37.42 -9.45 -46.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049103024.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 175.033 kcal (2) G-P(sol) polarization free energy of solvation -37.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 137.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.870 kcal (6) G-S(sol) free energy of system = (1) + (5) 128.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds