Wall clock time and date at job start Tue Mar 31 2020 14:54:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86799 * 120.00284 * 2 1 4 4 H 1.48507 * 109.46907 * 274.98721 * 3 2 1 5 5 H 1.48495 * 109.46986 * 34.98365 * 3 2 1 6 6 H 1.48497 * 109.47010 * 154.98974 * 3 2 1 7 7 C 1.38816 * 119.99346 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99403 * 172.66816 * 7 2 1 9 9 N 1.36934 * 120.00604 * 352.66389 * 7 2 1 10 10 C 1.46775 * 125.33902 * 185.39666 * 9 7 2 11 11 C 1.53973 * 106.62501 * 161.51559 * 10 9 7 12 12 H 1.08993 * 113.01662 * 265.71693 * 11 10 9 13 13 C 1.54097 * 109.44523 * 138.17255 * 11 10 9 14 14 N 1.46746 * 106.63467 * 278.64370 * 13 11 10 15 15 C 1.34775 * 125.32747 * 161.59012 * 14 13 11 16 16 O 1.21789 * 119.99993 * 184.65267 * 15 14 13 17 17 C 1.41694 * 120.00498 * 4.64542 * 15 14 13 18 18 C 1.39193 * 125.87434 * 6.57003 * 17 15 14 19 19 C 1.38077 * 107.68137 * 180.02562 * 18 17 15 20 20 C 1.39508 * 107.56788 * 359.97438 * 19 18 17 21 21 C 1.40617 * 132.41401 * 180.02562 * 20 19 18 22 22 C 1.36296 * 119.16164 * 179.97438 * 21 20 19 23 23 C 1.39967 * 120.03451 * 0.06895 * 22 21 20 24 24 N 1.30645 * 120.99366 * 359.89067 * 23 22 21 25 25 N 1.37155 * 108.20339 * 359.97438 * 20 19 18 26 26 C 1.46635 * 109.34179 * 341.31588 * 14 13 11 27 27 C 1.53692 * 108.00741 * 1.06983 * 26 14 13 28 28 H 1.09001 * 112.55676 * 254.08731 * 27 26 14 29 29 C 1.46673 * 125.33714 * 5.43212 * 9 7 2 30 30 H 0.96998 * 119.99373 * 0.02562 * 1 2 3 31 31 H 1.08990 * 110.02898 * 42.22443 * 10 9 7 32 32 H 1.08999 * 110.02331 * 280.80491 * 10 9 7 33 33 H 1.08993 * 110.14687 * 159.29992 * 13 11 10 34 34 H 1.09002 * 109.95800 * 37.87873 * 13 11 10 35 35 H 1.08001 * 126.15357 * 0.04624 * 18 17 15 36 36 H 1.08004 * 126.21712 * 180.02562 * 19 18 17 37 37 H 1.08000 * 120.41956 * 359.97438 * 21 20 19 38 38 H 1.08000 * 119.98311 * 180.02562 * 22 21 20 39 39 H 1.08006 * 119.50276 * 179.97438 * 23 22 21 40 40 H 1.08998 * 109.75814 * 120.70997 * 26 14 13 41 41 H 1.09001 * 109.76479 * 241.42639 * 26 14 13 42 42 H 1.08999 * 109.76945 * 60.88862 * 29 9 7 43 43 H 1.09005 * 109.76708 * 300.13353 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.3924 2.1072 -1.3949 5 1 1.5045 2.6199 0.8027 6 1 3.5966 1.4119 0.5919 7 6 2.0102 -1.2023 -0.0005 8 1 3.0836 -1.2060 -0.1199 9 7 1.3339 -2.3834 0.1504 10 6 1.9552 -3.7069 0.2792 11 6 0.8881 -4.6374 0.8845 12 1 0.9561 -4.7146 1.9696 13 6 0.9301 -6.0008 0.1676 14 7 0.1717 -5.8435 -1.0788 15 6 0.2501 -6.6613 -2.1472 16 8 -0.3608 -6.3925 -3.1660 17 6 1.0434 -7.8337 -2.0855 18 6 1.6853 -8.3255 -0.9525 19 6 2.3493 -9.4806 -1.3149 20 6 2.1115 -9.6947 -2.6728 21 6 2.5291 -10.7010 -3.5617 22 6 2.1282 -10.6459 -4.8631 23 6 1.3122 -9.5963 -5.3009 24 7 0.9213 -8.6598 -4.4781 25 7 1.3104 -8.6808 -3.1325 26 6 -0.6897 -4.6612 -0.9774 27 6 -0.4496 -4.0149 0.3963 28 1 -1.2727 -4.1882 1.0895 29 6 -0.1249 -2.5243 0.2078 30 1 -0.4849 0.8401 -0.0004 31 1 2.8198 -3.6506 0.9404 32 1 2.2578 -4.0742 -0.7014 33 1 0.4689 -6.7669 0.7907 34 1 1.9619 -6.2722 -0.0554 35 1 1.6669 -7.8833 0.0327 36 1 2.9441 -10.1054 -0.6650 37 1 3.1597 -11.5075 -3.2175 38 1 2.4408 -11.4120 -5.5572 39 1 0.9998 -9.5608 -6.3342 40 1 -0.4379 -3.9531 -1.7669 41 1 -1.7347 -4.9576 -1.0676 42 1 -0.5669 -2.1652 -0.7216 43 1 -0.5177 -1.9521 1.0484 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049103024.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:54:04 Heat of formation + Delta-G solvation = 101.554405 kcal Electronic energy + Delta-G solvation = -27542.432496 eV Core-core repulsion = 23783.180162 eV Total energy + Delta-G solvation = -3759.252334 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.05835 -41.45381 -39.54910 -38.15278 -36.68114 -34.22472 -34.15009 -32.38052 -31.34688 -31.15476 -29.89872 -27.48100 -27.19145 -25.67391 -24.92202 -23.44726 -22.35801 -21.74562 -21.17741 -20.81558 -19.14036 -18.44057 -18.15412 -17.59249 -17.38646 -16.79008 -16.63626 -16.47802 -16.20442 -15.67844 -15.54736 -14.76874 -14.70457 -14.53043 -14.35637 -14.06821 -13.82198 -13.60233 -13.46923 -13.31722 -13.24108 -13.02368 -12.92750 -12.71844 -12.60348 -12.01839 -11.88665 -11.72192 -11.61440 -11.57353 -11.46391 -11.39522 -11.07799 -10.69244 -9.97384 -9.73518 -8.88833 -8.77763 -7.87705 -5.21741 -0.42925 -0.05988 0.88524 1.27346 1.44094 1.45616 1.55436 2.00140 2.25393 2.41200 2.48440 3.26962 3.29835 3.43023 3.53209 3.62767 3.75748 3.80835 3.92121 3.94792 3.99991 4.19869 4.27668 4.34303 4.47772 4.51227 4.56277 4.74547 4.75932 4.81644 4.83834 4.89320 4.98809 5.02342 5.10240 5.13857 5.20536 5.29756 5.38921 5.46948 5.60346 5.67329 5.75618 5.76879 6.20296 6.45204 6.64288 7.07850 7.10201 7.78825 8.41041 9.23001 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.022160 B = 0.002886 C = 0.002839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.233564 B = 9699.257563 C = 9859.127265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.065 4.065 3 Si 0.978 3.022 4 H -0.293 1.293 5 H -0.290 1.290 6 H -0.265 1.265 7 C -0.245 4.245 8 H 0.080 0.920 9 N -0.625 5.625 10 C 0.137 3.863 11 C -0.092 4.092 12 H 0.140 0.860 13 C 0.103 3.897 14 N -0.601 5.601 15 C 0.584 3.416 16 O -0.596 6.596 17 C -0.074 4.074 18 C -0.110 4.110 19 C -0.165 4.165 20 C -0.008 4.008 21 C -0.021 4.021 22 C -0.185 4.185 23 C 0.125 3.875 24 N -0.318 5.318 25 N -0.239 5.239 26 C 0.130 3.870 27 C -0.107 4.107 28 H 0.125 0.875 29 C 0.195 3.805 30 H 0.247 0.753 31 H 0.051 0.949 32 H -0.001 1.001 33 H 0.117 0.883 34 H 0.099 0.901 35 H 0.201 0.799 36 H 0.199 0.801 37 H 0.202 0.798 38 H 0.197 0.803 39 H 0.226 0.774 40 H 0.025 0.975 41 H 0.067 0.933 42 H -0.002 1.002 43 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.522 -29.013 -0.935 29.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.258 4.258 3 Si 0.806 3.194 4 H -0.220 1.220 5 H -0.216 1.216 6 H -0.189 1.189 7 C -0.374 4.374 8 H 0.098 0.902 9 N -0.351 5.351 10 C 0.012 3.988 11 C -0.111 4.111 12 H 0.158 0.842 13 C -0.019 4.019 14 N -0.333 5.333 15 C 0.378 3.622 16 O -0.478 6.478 17 C -0.190 4.190 18 C -0.135 4.135 19 C -0.190 4.190 20 C -0.121 4.121 21 C -0.047 4.047 22 C -0.208 4.208 23 C -0.066 4.066 24 N -0.128 5.128 25 N -0.001 5.001 26 C 0.007 3.993 27 C -0.127 4.127 28 H 0.143 0.857 29 C 0.070 3.930 30 H 0.056 0.944 31 H 0.069 0.931 32 H 0.017 0.983 33 H 0.135 0.865 34 H 0.117 0.883 35 H 0.218 0.782 36 H 0.216 0.784 37 H 0.219 0.781 38 H 0.214 0.786 39 H 0.242 0.758 40 H 0.043 0.957 41 H 0.086 0.914 42 H 0.017 0.983 43 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 5.458 -27.734 -1.809 28.324 hybrid contribution 0.261 1.268 -0.809 1.527 sum 5.718 -26.466 -2.618 27.203 Atomic orbital electron populations 1.70203 1.06308 1.25302 1.57951 1.25678 0.96616 1.01082 1.02457 0.85078 0.78052 0.79249 0.77052 1.22036 1.21643 1.18932 1.19427 0.91640 0.83977 1.42376 0.90199 1.44559 1.02363 1.02392 1.85760 1.21465 0.95869 0.85004 0.96439 1.23053 0.93244 0.93020 1.01827 0.84223 1.22720 0.97572 0.97619 0.83954 1.47905 1.43071 1.26450 1.15920 1.15813 0.81487 0.82831 0.82076 1.90831 1.49386 1.76114 1.31512 1.18855 1.14215 0.98181 0.87757 1.22480 0.96560 0.96647 0.97777 1.21586 1.05796 0.99800 0.91795 1.20380 1.00871 0.93471 0.97331 1.21553 0.95735 0.95689 0.91684 1.22015 1.00245 1.00748 0.97771 1.24962 0.91813 0.89164 1.00649 1.76151 1.22345 1.26586 0.87685 1.45601 1.31599 1.17879 1.04983 1.21692 0.94064 0.85980 0.97559 1.22993 0.99562 0.95307 0.94822 0.85721 1.20756 0.84020 0.90550 0.97659 0.94372 0.93107 0.98334 0.86513 0.88333 0.78230 0.78375 0.78140 0.78582 0.75841 0.95666 0.91445 0.98336 0.95943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.72 10.30 21.65 0.22 -58.50 16 2 C -0.07 -3.83 5.48 84.86 0.46 -3.36 16 3 Si 0.98 47.09 29.56 68.60 2.03 49.12 16 4 H -0.29 -14.15 7.11 99.48 0.71 -13.45 16 5 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 6 H -0.26 -11.94 7.11 99.48 0.71 -11.23 16 7 C -0.25 -14.20 10.24 84.04 0.86 -13.34 16 8 H 0.08 4.44 7.84 -2.91 -0.02 4.42 16 9 N -0.62 -32.89 3.38 -697.57 -2.36 -35.25 16 10 C 0.14 5.57 6.49 86.66 0.56 6.13 16 11 C -0.09 -2.73 4.16 -9.26 -0.04 -2.77 16 12 H 0.14 3.20 8.14 -2.39 -0.02 3.18 16 13 C 0.10 2.50 4.15 86.70 0.36 2.86 16 14 N -0.60 -21.02 3.30 -827.83 -2.73 -23.75 16 15 C 0.58 23.31 7.62 85.10 0.65 23.96 16 16 O -0.60 -29.53 16.81 -4.63 -0.08 -29.61 16 17 C -0.07 -2.40 6.80 39.37 0.27 -2.13 16 18 C -0.11 -2.35 9.02 22.46 0.20 -2.14 16 19 C -0.17 -2.72 10.92 22.54 0.25 -2.47 16 20 C -0.01 -0.16 6.80 39.20 0.27 0.11 16 21 C -0.02 -0.23 10.11 22.40 0.23 0.00 16 22 C -0.19 -1.80 10.04 22.24 0.22 -1.58 16 23 C 0.12 2.17 11.29 85.29 0.96 3.13 16 24 N -0.32 -9.85 11.33 -57.06 -0.65 -10.50 16 25 N -0.24 -7.34 4.01 -180.12 -0.72 -8.07 16 26 C 0.13 5.11 6.22 86.59 0.54 5.64 16 27 C -0.11 -3.86 4.01 -9.49 -0.04 -3.90 16 28 H 0.12 3.68 8.14 -2.39 -0.02 3.66 16 29 C 0.20 9.84 4.78 86.59 0.41 10.25 16 30 H 0.25 14.85 8.31 -92.71 -0.77 14.08 16 31 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 32 H 0.00 -0.05 7.72 -2.39 -0.02 -0.07 16 33 H 0.12 1.86 7.38 -2.39 -0.02 1.84 16 34 H 0.10 2.14 5.98 -2.39 -0.01 2.12 16 35 H 0.20 2.93 4.41 -2.91 -0.01 2.91 16 36 H 0.20 1.41 8.06 -2.91 -0.02 1.39 16 37 H 0.20 0.29 8.06 -2.91 -0.02 0.27 16 38 H 0.20 0.00 8.06 -2.91 -0.02 -0.02 16 39 H 0.23 2.01 8.06 -2.91 -0.02 1.98 16 40 H 0.02 1.23 7.29 -2.39 -0.02 1.21 16 41 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 42 H 0.00 -0.09 6.85 -2.39 -0.02 -0.11 16 43 H 0.02 1.24 7.28 -2.38 -0.02 1.22 16 Total: -1.00 -94.48 346.00 2.92 -91.56 By element: Atomic # 1 Polarization: 3.57 SS G_CDS: 1.04 Total: 4.61 kcal Atomic # 6 Polarization: 14.21 SS G_CDS: 6.17 Total: 20.38 kcal Atomic # 7 Polarization: -129.82 SS G_CDS: -6.24 Total: -136.06 kcal Atomic # 8 Polarization: -29.53 SS G_CDS: -0.08 Total: -29.61 kcal Atomic # 14 Polarization: 47.09 SS G_CDS: 2.03 Total: 49.12 kcal Total: -94.48 2.92 -91.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049103024.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 193.112 kcal (2) G-P(sol) polarization free energy of solvation -94.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.557 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds