Wall clock time and date at job start Tue Mar 31 2020 14:51:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86797 * 120.00080 * 2 1 4 4 H 1.48496 * 109.47348 * 240.00025 * 3 2 1 5 5 H 1.48503 * 109.47225 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46706 * 120.00369 * 3 2 1 7 7 C 1.38806 * 119.99651 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00012 * 166.89437 * 7 2 1 9 9 N 1.36942 * 119.99984 * 346.61033 * 7 2 1 10 10 C 1.47230 * 121.33527 * 154.75443 * 9 7 2 11 11 C 1.53271 * 107.65653 * 115.81008 * 10 9 7 12 12 C 1.50606 * 110.82522 * 47.65042 * 11 10 9 13 13 C 1.38982 * 117.61659 * 160.39372 * 12 11 10 14 14 C 1.50698 * 119.70936 * 358.77858 * 13 12 11 15 15 N 1.46504 * 109.47360 * 79.99853 * 14 13 12 16 16 C 1.34776 * 120.00188 * 179.97438 * 15 14 13 17 17 O 1.21570 * 120.00035 * 0.02562 * 16 15 14 18 18 C 1.47705 * 119.99778 * 179.97438 * 16 15 14 19 19 C 1.41500 * 126.51877 * 179.71600 * 18 16 15 20 20 C 1.35363 * 105.50525 * 179.84586 * 19 18 16 21 21 N 1.35026 * 107.22894 * 0.40734 * 20 19 18 22 22 H 0.97001 * 124.88883 * 179.72347 * 21 20 19 23 23 N 1.28469 * 110.23040 * 359.73544 * 21 20 19 24 24 C 1.37905 * 120.58080 * 178.77618 * 13 12 11 25 25 C 1.38270 * 119.82507 * 0.03488 * 24 13 12 26 26 C 1.37956 * 119.71798 * 0.27152 * 25 24 13 27 27 C 1.37665 * 122.85650 * 339.68371 * 12 11 10 28 28 C 1.46685 * 121.33549 * 335.03352 * 9 7 2 29 29 H 0.97003 * 119.99307 * 359.97438 * 1 2 3 30 30 H 1.08996 * 109.76806 * 235.41876 * 10 9 7 31 31 H 1.09002 * 109.76979 * 356.20242 * 10 9 7 32 32 H 1.08996 * 109.31163 * 287.23905 * 11 10 9 33 33 H 1.09007 * 109.08381 * 167.90741 * 11 10 9 34 34 H 1.09005 * 109.46966 * 199.99600 * 14 13 12 35 35 H 1.08996 * 109.47419 * 319.99631 * 14 13 12 36 36 H 0.97002 * 119.99811 * 359.97438 * 15 14 13 37 37 H 1.08005 * 127.24433 * 359.97438 * 19 18 16 38 38 H 1.08005 * 126.38680 * 180.14421 * 20 19 18 39 39 H 1.07994 * 120.08870 * 180.02562 * 24 13 12 40 40 H 1.07997 * 120.14152 * 180.24144 * 25 24 13 41 41 H 1.08001 * 119.75279 * 179.90329 * 26 25 24 42 42 H 1.08999 * 109.43328 * 344.46104 * 28 9 7 43 43 H 1.09002 * 109.43493 * 104.33294 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6964 -1.2124 5 1 1.2853 2.7465 0.0006 6 1 3.1041 1.6962 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0691 -1.2143 -0.2126 9 7 1.3534 -2.3721 0.2736 10 6 1.8502 -3.6645 -0.2269 11 6 2.2368 -4.5158 0.9876 12 6 1.1467 -4.4927 2.0265 13 6 1.1381 -5.5095 2.9740 14 6 2.1821 -6.5947 2.9144 15 7 3.4310 -6.1037 3.5021 16 6 4.5112 -6.9078 3.5584 17 8 4.4492 -8.0405 3.1211 18 6 5.7705 -6.4125 4.1503 19 6 6.9794 -7.1355 4.2846 20 6 7.8482 -6.2815 4.8746 21 7 7.1885 -5.1225 5.0861 22 1 7.5715 -4.3338 5.5009 23 7 5.9803 -5.2148 4.6592 24 6 0.1827 -5.5340 3.9682 25 6 -0.7766 -4.5399 4.0246 26 6 -0.7743 -3.5329 3.0817 27 6 0.1846 -3.5094 2.0779 28 6 0.1233 -2.3871 1.0725 29 1 -0.4849 0.8401 0.0004 30 1 1.0672 -4.1648 -0.7966 31 1 2.7226 -3.5038 -0.8604 32 1 3.1561 -4.1250 1.4238 33 1 2.4022 -5.5436 0.6643 34 1 1.8348 -7.4639 3.4730 35 1 2.3551 -6.8758 1.8757 36 1 3.4806 -5.1998 3.8506 37 1 7.1695 -8.1538 3.9787 38 1 8.8761 -6.4898 5.1324 39 1 0.1838 -6.3276 4.7006 40 1 -1.5248 -4.5519 4.8033 41 1 -1.5244 -2.7570 3.1244 42 1 0.0190 -1.4366 1.5958 43 1 -0.7340 -2.5349 0.4157 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001051280167.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:51:00 Heat of formation + Delta-G solvation = 87.804973 kcal Electronic energy + Delta-G solvation = -27087.736632 eV Core-core repulsion = 23327.888078 eV Total energy + Delta-G solvation = -3759.848554 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.81003 -39.87601 -38.90799 -35.95189 -34.88396 -32.75356 -32.22848 -31.51482 -30.81705 -30.09777 -28.75811 -26.24511 -25.53631 -23.62426 -23.10610 -22.08835 -21.89283 -20.44927 -20.05396 -18.98662 -18.76742 -17.16843 -16.76646 -16.01428 -15.93828 -15.61465 -15.23330 -14.82675 -14.33927 -14.32309 -14.09874 -13.89184 -13.58271 -13.37494 -13.12711 -12.87110 -12.60985 -12.51254 -12.29008 -11.90496 -11.49595 -11.23256 -11.15341 -10.91655 -10.84253 -10.71273 -10.38327 -10.22153 -10.10465 -9.89333 -9.71177 -9.66307 -9.43493 -8.96025 -8.68356 -8.23448 -7.84061 -6.76318 -5.83061 -3.24106 1.44841 1.65235 1.91745 1.93543 2.64666 3.33160 3.36445 3.40180 3.41818 3.42854 4.22658 4.36987 4.45849 4.61680 4.89911 5.09213 5.18743 5.29741 5.35414 5.41492 5.44954 5.52518 5.55762 5.58428 5.78759 5.87946 6.02895 6.13494 6.15783 6.18453 6.25979 6.43370 6.52041 6.58819 6.69129 6.72168 6.87396 6.88915 6.98821 7.15146 7.24461 7.44584 7.48971 7.64162 7.72890 7.75173 8.22107 8.35970 9.16307 9.78107 10.36500 11.27117 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.010967 B = 0.003748 C = 0.003097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2552.584980 B = 7468.043891 C = 9038.873668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.001 3.999 3 Si 0.906 3.094 4 H -0.282 1.282 5 H -0.290 1.290 6 H -0.284 1.284 7 C -0.247 4.247 8 H 0.068 0.932 9 N -0.593 5.593 10 C 0.142 3.858 11 C -0.100 4.100 12 C -0.045 4.045 13 C -0.124 4.124 14 C 0.165 3.835 15 N -0.706 5.706 16 C 0.602 3.398 17 O -0.538 6.538 18 C -0.012 4.012 19 C -0.180 4.180 20 C -0.018 4.018 21 N -0.382 5.382 22 H 0.447 0.553 23 N -0.254 5.254 24 C -0.117 4.117 25 C -0.132 4.132 26 C -0.113 4.113 27 C -0.077 4.077 28 C 0.205 3.795 29 H 0.255 0.745 30 H 0.027 0.973 31 H 0.060 0.940 32 H 0.070 0.930 33 H 0.062 0.938 34 H 0.072 0.928 35 H 0.080 0.920 36 H 0.410 0.590 37 H 0.163 0.837 38 H 0.185 0.815 39 H 0.114 0.886 40 H 0.115 0.885 41 H 0.119 0.881 42 H 0.099 0.901 43 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.743 -11.721 11.642 19.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.197 4.197 3 Si 0.736 3.264 4 H -0.209 1.209 5 H -0.215 1.215 6 H -0.211 1.211 7 C -0.376 4.376 8 H 0.086 0.914 9 N -0.315 5.315 10 C 0.015 3.985 11 C -0.139 4.139 12 C -0.046 4.046 13 C -0.125 4.125 14 C 0.043 3.957 15 N -0.357 5.357 16 C 0.386 3.614 17 O -0.414 6.414 18 C -0.173 4.173 19 C -0.209 4.209 20 C -0.162 4.162 21 N -0.097 5.097 22 H 0.291 0.709 23 N -0.091 5.091 24 C -0.136 4.136 25 C -0.150 4.150 26 C -0.132 4.132 27 C -0.079 4.079 28 C 0.079 3.921 29 H 0.065 0.935 30 H 0.045 0.955 31 H 0.079 0.921 32 H 0.089 0.911 33 H 0.081 0.919 34 H 0.090 0.910 35 H 0.098 0.902 36 H 0.245 0.755 37 H 0.180 0.820 38 H 0.202 0.798 39 H 0.132 0.868 40 H 0.133 0.867 41 H 0.137 0.863 42 H 0.117 0.883 43 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 9.035 -11.395 11.459 18.514 hybrid contribution 1.051 1.026 0.397 1.521 sum 10.087 -10.369 11.856 18.704 Atomic orbital electron populations 1.69972 1.05160 1.25682 1.54709 1.25023 0.95440 0.98293 1.00938 0.86307 0.78812 0.83193 0.78092 1.20870 1.21550 1.21083 1.19137 0.91602 0.83989 1.42906 0.91399 1.43994 1.27934 1.01817 1.57789 1.21013 0.97538 0.87254 0.92665 1.21123 0.96311 0.99850 0.96578 1.19449 0.96283 0.93158 0.95687 1.19780 0.97889 0.97347 0.97478 1.20211 0.81466 0.94648 0.99387 1.45962 1.10918 1.17517 1.61295 1.16880 0.81440 0.84723 0.78321 1.90785 1.83702 1.18644 1.48229 1.22024 0.96814 0.91796 1.06691 1.21812 0.91729 1.01819 1.05492 1.22955 1.00463 0.87135 1.05656 1.43394 1.07702 1.14015 1.44560 0.70877 1.73613 1.00535 1.20966 1.14014 1.20754 0.95801 0.99079 0.97951 1.20926 0.99192 0.95443 0.99476 1.21191 0.98771 0.98429 0.94787 1.21045 0.93057 0.97046 0.96741 1.19794 0.88684 0.93933 0.89658 0.93465 0.95495 0.92147 0.91136 0.91945 0.90975 0.90206 0.75480 0.81954 0.79803 0.86831 0.86695 0.86282 0.88327 0.94221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.86 10.98 55.49 0.61 -25.25 16 2 C 0.00 0.03 5.05 -17.43 -0.09 -0.06 16 3 Si 0.91 21.51 29.57 -169.99 -5.03 16.48 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.25 -6.71 9.71 -15.06 -0.15 -6.86 16 8 H 0.07 1.81 7.86 -52.49 -0.41 1.39 16 9 N -0.59 -14.82 2.97 -173.65 -0.52 -15.33 16 10 C 0.14 2.99 6.55 -3.50 -0.02 2.96 16 11 C -0.10 -1.81 5.25 -27.79 -0.15 -1.96 16 12 C -0.05 -0.82 5.76 -104.60 -0.60 -1.43 16 13 C -0.12 -1.94 5.25 -104.47 -0.55 -2.49 16 14 C 0.17 2.34 5.10 -5.19 -0.03 2.32 16 15 N -0.71 -9.98 5.52 -62.47 -0.34 -10.32 16 16 C 0.60 9.00 7.82 -12.39 -0.10 8.90 16 17 O -0.54 -9.30 16.93 5.30 0.09 -9.21 16 18 C -0.01 -0.16 7.13 -82.77 -0.59 -0.75 16 19 C -0.18 -1.88 10.81 -39.36 -0.43 -2.31 16 20 C -0.02 -0.13 12.02 -17.17 -0.21 -0.33 16 21 N -0.38 -3.07 6.83 30.47 0.21 -2.86 16 22 H 0.45 1.92 8.96 -190.44 -1.71 0.21 16 23 N -0.25 -3.06 11.92 33.42 0.40 -2.66 16 24 C -0.12 -1.70 9.65 -39.69 -0.38 -2.08 16 25 C -0.13 -1.97 10.05 -39.67 -0.40 -2.37 16 26 C -0.11 -1.97 9.62 -39.46 -0.38 -2.35 16 27 C -0.08 -1.55 5.82 -104.56 -0.61 -2.16 16 28 C 0.20 4.88 4.84 -5.04 -0.02 4.86 16 29 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 30 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.06 1.23 7.96 -51.93 -0.41 0.82 16 32 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 33 H 0.06 1.01 6.26 -51.92 -0.33 0.69 16 34 H 0.07 0.96 7.99 -51.93 -0.41 0.55 16 35 H 0.08 1.17 6.34 -51.93 -0.33 0.84 16 36 H 0.41 5.80 8.19 -40.82 -0.33 5.46 16 37 H 0.16 1.52 8.06 -52.48 -0.42 1.10 16 38 H 0.18 0.53 8.06 -52.48 -0.42 0.10 16 39 H 0.11 1.38 8.02 -52.49 -0.42 0.95 16 40 H 0.12 1.40 8.06 -52.49 -0.42 0.98 16 41 H 0.12 1.95 8.05 -52.49 -0.42 1.53 16 42 H 0.10 2.60 6.29 -51.93 -0.33 2.27 16 43 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 359.32 15.07 5.41 5.41 Total: -1.00 -32.99 359.32 -10.64 -43.63 By element: Atomic # 1 Polarization: 12.97 SS G_CDS: -6.78 Total: 6.20 kcal Atomic # 6 Polarization: -1.39 SS G_CDS: -4.69 Total: -6.09 kcal Atomic # 7 Polarization: -56.78 SS G_CDS: 0.36 Total: -56.43 kcal Atomic # 8 Polarization: -9.30 SS G_CDS: 0.09 Total: -9.21 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.03 Total: 16.48 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -32.99 -10.64 -43.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051280167.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.437 kcal (2) G-P(sol) polarization free energy of solvation -32.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.632 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds