Wall clock time and date at job start Tue Mar 31 2020 14:50:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86797 * 120.00080 * 2 1 4 4 H 1.48496 * 109.47348 * 240.00025 * 3 2 1 5 5 H 1.48503 * 109.47225 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46706 * 120.00369 * 3 2 1 7 7 C 1.38806 * 119.99651 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00012 * 166.89437 * 7 2 1 9 9 N 1.36942 * 119.99984 * 346.61033 * 7 2 1 10 10 C 1.47230 * 121.33527 * 154.75443 * 9 7 2 11 11 C 1.53271 * 107.65653 * 115.81008 * 10 9 7 12 12 C 1.50606 * 110.82522 * 47.65042 * 11 10 9 13 13 C 1.38982 * 117.61659 * 160.39372 * 12 11 10 14 14 C 1.50698 * 119.70936 * 358.77858 * 13 12 11 15 15 N 1.46504 * 109.47360 * 79.99853 * 14 13 12 16 16 C 1.34776 * 120.00188 * 179.97438 * 15 14 13 17 17 O 1.21570 * 120.00035 * 0.02562 * 16 15 14 18 18 C 1.47705 * 119.99778 * 179.97438 * 16 15 14 19 19 C 1.41500 * 126.51877 * 179.71600 * 18 16 15 20 20 C 1.35363 * 105.50525 * 179.84586 * 19 18 16 21 21 N 1.35026 * 107.22894 * 0.40734 * 20 19 18 22 22 H 0.97001 * 124.88883 * 179.72347 * 21 20 19 23 23 N 1.28469 * 110.23040 * 359.73544 * 21 20 19 24 24 C 1.37905 * 120.58080 * 178.77618 * 13 12 11 25 25 C 1.38270 * 119.82507 * 0.03488 * 24 13 12 26 26 C 1.37956 * 119.71798 * 0.27152 * 25 24 13 27 27 C 1.37665 * 122.85650 * 339.68371 * 12 11 10 28 28 C 1.46685 * 121.33549 * 335.03352 * 9 7 2 29 29 H 0.97003 * 119.99307 * 359.97438 * 1 2 3 30 30 H 1.08996 * 109.76806 * 235.41876 * 10 9 7 31 31 H 1.09002 * 109.76979 * 356.20242 * 10 9 7 32 32 H 1.08996 * 109.31163 * 287.23905 * 11 10 9 33 33 H 1.09007 * 109.08381 * 167.90741 * 11 10 9 34 34 H 1.09005 * 109.46966 * 199.99600 * 14 13 12 35 35 H 1.08996 * 109.47419 * 319.99631 * 14 13 12 36 36 H 0.97002 * 119.99811 * 359.97438 * 15 14 13 37 37 H 1.08005 * 127.24433 * 359.97438 * 19 18 16 38 38 H 1.08005 * 126.38680 * 180.14421 * 20 19 18 39 39 H 1.07994 * 120.08870 * 180.02562 * 24 13 12 40 40 H 1.07997 * 120.14152 * 180.24144 * 25 24 13 41 41 H 1.08001 * 119.75279 * 179.90329 * 26 25 24 42 42 H 1.08999 * 109.43328 * 344.46104 * 28 9 7 43 43 H 1.09002 * 109.43493 * 104.33294 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6964 -1.2124 5 1 1.2853 2.7465 0.0006 6 1 3.1041 1.6962 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0691 -1.2143 -0.2126 9 7 1.3534 -2.3721 0.2736 10 6 1.8502 -3.6645 -0.2269 11 6 2.2368 -4.5158 0.9876 12 6 1.1467 -4.4927 2.0265 13 6 1.1381 -5.5095 2.9740 14 6 2.1821 -6.5947 2.9144 15 7 3.4310 -6.1037 3.5021 16 6 4.5112 -6.9078 3.5584 17 8 4.4492 -8.0405 3.1211 18 6 5.7705 -6.4125 4.1503 19 6 6.9794 -7.1355 4.2846 20 6 7.8482 -6.2815 4.8746 21 7 7.1885 -5.1225 5.0861 22 1 7.5715 -4.3338 5.5009 23 7 5.9803 -5.2148 4.6592 24 6 0.1827 -5.5340 3.9682 25 6 -0.7766 -4.5399 4.0246 26 6 -0.7743 -3.5329 3.0817 27 6 0.1846 -3.5094 2.0779 28 6 0.1233 -2.3871 1.0725 29 1 -0.4849 0.8401 0.0004 30 1 1.0672 -4.1648 -0.7966 31 1 2.7226 -3.5038 -0.8604 32 1 3.1561 -4.1250 1.4238 33 1 2.4022 -5.5436 0.6643 34 1 1.8348 -7.4639 3.4730 35 1 2.3551 -6.8758 1.8757 36 1 3.4806 -5.1998 3.8506 37 1 7.1695 -8.1538 3.9787 38 1 8.8761 -6.4898 5.1324 39 1 0.1838 -6.3276 4.7006 40 1 -1.5248 -4.5519 4.8033 41 1 -1.5244 -2.7570 3.1244 42 1 0.0190 -1.4366 1.5958 43 1 -0.7340 -2.5349 0.4157 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001051280167.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:50:59 Heat of formation + Delta-G solvation = 65.862913 kcal Electronic energy + Delta-G solvation = -27088.688111 eV Core-core repulsion = 23327.888078 eV Total energy + Delta-G solvation = -3760.800033 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.55013 -41.18488 -40.14172 -37.65008 -36.11089 -34.46614 -33.39752 -32.59239 -31.77509 -31.62070 -30.28563 -27.52698 -27.31338 -24.83483 -24.56953 -23.75217 -22.59889 -21.73455 -21.10960 -20.60486 -19.45299 -18.65337 -18.17008 -17.32612 -16.94607 -16.88136 -16.51419 -16.46014 -15.92946 -15.56209 -15.36951 -15.25670 -14.72436 -14.60323 -14.47913 -14.14095 -14.02018 -13.88860 -13.56103 -13.35824 -13.24926 -12.81691 -12.71966 -12.53770 -12.38543 -12.20773 -11.95053 -11.86120 -11.62354 -11.40664 -11.30412 -10.68928 -10.50513 -10.14208 -10.05503 -9.56374 -9.31692 -8.77073 -7.90858 -5.35366 0.35045 0.53639 0.57139 1.26358 1.45203 1.47597 1.54418 1.97254 2.34895 2.38033 2.48492 2.95077 3.26147 3.47826 3.61479 3.69263 3.94090 4.03156 4.08905 4.16030 4.26065 4.33956 4.39521 4.55106 4.60502 4.73473 4.76402 4.79595 4.81316 4.83280 4.98803 5.12404 5.15172 5.18036 5.29992 5.38613 5.39940 5.46037 5.57369 5.63537 5.70548 5.95552 6.15791 6.18312 6.31629 6.43878 6.88730 7.09917 7.13190 7.78158 8.33681 9.17415 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.010967 B = 0.003748 C = 0.003097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2552.584980 B = 7468.043891 C = 9038.873668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.050 4.050 3 Si 0.971 3.029 4 H -0.275 1.275 5 H -0.292 1.292 6 H -0.279 1.279 7 C -0.262 4.262 8 H 0.069 0.931 9 N -0.611 5.611 10 C 0.138 3.862 11 C -0.085 4.085 12 C -0.059 4.059 13 C -0.116 4.116 14 C 0.169 3.831 15 N -0.702 5.702 16 C 0.601 3.399 17 O -0.569 6.569 18 C -0.043 4.043 19 C -0.207 4.207 20 C 0.014 3.986 21 N -0.368 5.368 22 H 0.463 0.537 23 N -0.281 5.281 24 C -0.104 4.104 25 C -0.120 4.120 26 C -0.122 4.122 27 C -0.108 4.108 28 C 0.221 3.779 29 H 0.251 0.749 30 H 0.025 0.975 31 H 0.061 0.939 32 H 0.063 0.937 33 H 0.084 0.916 34 H 0.088 0.912 35 H 0.074 0.926 36 H 0.410 0.590 37 H 0.166 0.834 38 H 0.234 0.766 39 H 0.150 0.850 40 H 0.151 0.849 41 H 0.119 0.881 42 H 0.064 0.936 43 H 0.006 0.994 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.637 -12.952 14.008 22.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.245 4.245 3 Si 0.799 3.201 4 H -0.200 1.200 5 H -0.218 1.218 6 H -0.205 1.205 7 C -0.392 4.392 8 H 0.087 0.913 9 N -0.334 5.334 10 C 0.012 3.988 11 C -0.123 4.123 12 C -0.060 4.060 13 C -0.117 4.117 14 C 0.047 3.953 15 N -0.352 5.352 16 C 0.387 3.613 17 O -0.447 6.447 18 C -0.203 4.203 19 C -0.235 4.235 20 C -0.131 4.131 21 N -0.085 5.085 22 H 0.311 0.689 23 N -0.119 5.119 24 C -0.122 4.122 25 C -0.138 4.138 26 C -0.141 4.141 27 C -0.109 4.109 28 C 0.095 3.905 29 H 0.060 0.940 30 H 0.043 0.957 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.102 0.898 34 H 0.106 0.894 35 H 0.092 0.908 36 H 0.245 0.755 37 H 0.184 0.816 38 H 0.251 0.749 39 H 0.167 0.833 40 H 0.169 0.831 41 H 0.137 0.863 42 H 0.082 0.918 43 H 0.024 0.976 Dipole moment (debyes) X Y Z Total from point charges 10.938 -12.625 13.835 21.690 hybrid contribution 0.514 1.346 -0.282 1.468 sum 11.453 -11.279 13.553 21.025 Atomic orbital electron populations 1.70152 1.06532 1.25983 1.55840 1.25793 0.96228 1.01371 1.01107 0.85291 0.77520 0.79048 0.78290 1.20036 1.21755 1.20519 1.19467 0.91931 0.85213 1.42544 0.91308 1.44242 1.28121 1.02565 1.58513 1.21156 0.97298 0.86224 0.94105 1.20923 0.96031 1.00145 0.95250 1.19465 0.95972 0.93836 0.96707 1.19839 0.98455 0.96525 0.96848 1.20182 0.81189 0.94471 0.99453 1.45922 1.10872 1.17406 1.61042 1.17172 0.82087 0.84303 0.77787 1.90753 1.84339 1.19852 1.49754 1.21927 0.96939 0.92970 1.08416 1.22070 0.91632 1.02735 1.07091 1.23611 1.01612 0.85400 1.02480 1.43532 1.06720 1.15049 1.43213 0.68896 1.73533 1.02530 1.20778 1.15018 1.21189 0.94258 0.99285 0.97501 1.21277 0.99612 0.93973 0.98947 1.21293 0.98275 0.99593 0.94952 1.20699 0.95730 0.96962 0.97512 1.19353 0.87312 0.94155 0.89638 0.93954 0.95733 0.92014 0.91821 0.89805 0.89418 0.90789 0.75471 0.81627 0.74941 0.83269 0.83100 0.86274 0.91760 0.97620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.78 10.98 21.65 0.24 -55.54 16 2 C -0.05 -2.82 5.05 84.86 0.43 -2.39 16 3 Si 0.97 45.18 29.57 68.60 2.03 47.21 16 4 H -0.27 -12.33 7.11 99.48 0.71 -11.63 16 5 H -0.29 -13.54 7.11 99.48 0.71 -12.84 16 6 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 7 C -0.26 -14.71 9.71 84.03 0.82 -13.90 16 8 H 0.07 3.75 7.86 -2.91 -0.02 3.73 16 9 N -0.61 -31.94 2.97 -703.30 -2.09 -34.03 16 10 C 0.14 5.99 6.55 86.33 0.57 6.55 16 11 C -0.09 -3.11 5.25 29.91 0.16 -2.95 16 12 C -0.06 -2.15 5.76 -19.85 -0.11 -2.27 16 13 C -0.12 -3.40 5.25 -19.77 -0.10 -3.50 16 14 C 0.17 4.49 5.10 85.63 0.44 4.93 16 15 N -0.70 -19.10 5.52 -469.84 -2.59 -21.69 16 16 C 0.60 17.61 7.82 86.75 0.68 18.29 16 17 O -0.57 -19.48 16.93 -3.94 -0.07 -19.54 16 18 C -0.04 -1.09 7.13 42.45 0.30 -0.78 16 19 C -0.21 -3.96 10.81 22.41 0.24 -3.71 16 20 C 0.01 0.15 12.02 83.54 1.00 1.15 16 21 N -0.37 -4.90 6.83 -57.51 -0.39 -5.29 16 22 H 0.46 2.56 8.96 -219.99 -1.97 0.59 16 23 N -0.28 -6.33 11.92 -48.18 -0.57 -6.91 16 24 C -0.10 -2.64 9.65 22.20 0.21 -2.43 16 25 C -0.12 -3.23 10.05 22.21 0.22 -3.00 16 26 C -0.12 -4.23 9.62 22.35 0.22 -4.01 16 27 C -0.11 -4.42 5.82 -19.82 -0.12 -4.54 16 28 C 0.22 11.21 4.84 85.63 0.41 11.62 16 29 H 0.25 14.45 8.31 -92.71 -0.77 13.68 16 30 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.06 2.59 7.96 -2.39 -0.02 2.58 16 32 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 33 H 0.08 2.67 6.26 -2.38 -0.01 2.66 16 34 H 0.09 2.09 7.99 -2.38 -0.02 2.07 16 35 H 0.07 2.07 6.34 -2.39 -0.02 2.06 16 36 H 0.41 11.23 8.19 -92.71 -0.76 10.47 16 37 H 0.17 2.91 8.06 -2.91 -0.02 2.88 16 38 H 0.23 0.06 8.06 -2.91 -0.02 0.03 16 39 H 0.15 2.82 8.02 -2.91 -0.02 2.80 16 40 H 0.15 3.00 8.06 -2.91 -0.02 2.98 16 41 H 0.12 4.00 8.05 -2.91 -0.02 3.98 16 42 H 0.06 3.63 6.29 -2.39 -0.02 3.61 16 43 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 Total: -1.00 -75.53 359.32 0.26 -75.27 By element: Atomic # 1 Polarization: 23.13 SS G_CDS: -1.66 Total: 21.47 kcal Atomic # 6 Polarization: -6.30 SS G_CDS: 5.36 Total: -0.94 kcal Atomic # 7 Polarization: -118.05 SS G_CDS: -5.41 Total: -123.46 kcal Atomic # 8 Polarization: -19.48 SS G_CDS: -0.07 Total: -19.54 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.21 kcal Total: -75.53 0.26 -75.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051280167.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.131 kcal (2) G-P(sol) polarization free energy of solvation -75.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.268 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds