Wall clock time and date at job start Tue Mar 31 2020 14:51:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86803 * 119.99829 * 2 1 4 4 H 1.48506 * 109.46867 * 269.99867 * 3 2 1 5 5 H 1.48496 * 109.47114 * 29.99979 * 3 2 1 6 6 H 1.48501 * 109.47260 * 150.00313 * 3 2 1 7 7 C 1.38812 * 120.00629 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00661 * 164.26578 * 7 2 1 9 9 N 1.36937 * 119.99699 * 344.27511 * 7 2 1 10 10 C 1.47232 * 121.33084 * 155.41524 * 9 7 2 11 11 C 1.52788 * 107.90740 * 115.78903 * 10 9 7 12 12 C 1.50595 * 110.91403 * 47.34906 * 11 10 9 13 13 C 1.38980 * 117.63081 * 160.05931 * 12 11 10 14 14 C 1.50694 * 119.71015 * 359.29125 * 13 12 11 15 15 N 1.46505 * 109.47479 * 79.72341 * 14 13 12 16 16 C 1.34780 * 119.99954 * 179.97438 * 15 14 13 17 17 O 1.21605 * 120.00091 * 359.97438 * 16 15 14 18 18 C 1.47403 * 119.99513 * 180.02562 * 16 15 14 19 19 N 1.31615 * 125.86732 * 0.02562 * 18 16 15 20 20 C 1.33096 * 109.09597 * 179.97438 * 19 18 16 21 21 C 1.35564 * 108.35343 * 359.97438 * 20 19 18 22 22 N 1.35405 * 107.15639 * 0.02562 * 21 20 19 23 23 H 0.96999 * 126.43653 * 179.97438 * 22 21 20 24 24 C 1.37907 * 120.57982 * 179.01177 * 13 12 11 25 25 C 1.38266 * 119.82855 * 0.33237 * 24 13 12 26 26 C 1.37959 * 119.71597 * 0.26241 * 25 24 13 27 27 C 1.37676 * 122.85196 * 340.07925 * 12 11 10 28 28 C 1.46682 * 121.32925 * 335.38743 * 9 7 2 29 29 H 0.96994 * 120.00460 * 359.97438 * 1 2 3 30 30 H 1.09000 * 109.76997 * 235.39219 * 10 9 7 31 31 H 1.08998 * 109.76784 * 356.18719 * 10 9 7 32 32 H 1.08998 * 109.20003 * 167.88651 * 11 10 9 33 33 H 1.09001 * 109.20345 * 287.22919 * 11 10 9 34 34 H 1.09000 * 109.47398 * 319.72325 * 14 13 12 35 35 H 1.09004 * 109.47099 * 199.72524 * 14 13 12 36 36 H 0.96998 * 119.99667 * 0.02562 * 15 14 13 37 37 H 1.08008 * 125.82681 * 179.97438 * 20 19 18 38 38 H 1.07997 * 126.42384 * 180.02562 * 21 20 19 39 39 H 1.08002 * 120.09150 * 180.35873 * 24 13 12 40 40 H 1.08000 * 120.14409 * 180.28027 * 25 24 13 41 41 H 1.07998 * 119.75056 * 179.83393 * 26 25 24 42 42 H 1.09002 * 109.43549 * 104.34112 * 28 9 7 43 43 H 1.09007 * 109.43493 * 344.47956 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0464 -1.4002 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4403 0.7000 7 6 2.0104 -1.2021 0.0005 8 1 3.0599 -1.2197 -0.2531 9 7 1.3642 -2.3657 0.3225 10 6 1.8520 -3.6699 -0.1558 11 6 2.2729 -4.4897 1.0628 12 6 1.2162 -4.4409 2.1346 13 6 1.2323 -5.4390 3.1016 14 6 2.2757 -6.5243 3.0374 15 7 3.5400 -6.0190 3.5782 16 6 4.6225 -6.8208 3.6223 17 8 4.5496 -7.9638 3.2136 18 6 5.8944 -6.3125 4.1670 19 7 6.1018 -5.1018 4.6396 20 6 7.3661 -5.0027 5.0434 21 6 7.9800 -6.1905 4.8197 22 7 7.0605 -7.0178 4.2688 23 1 7.2029 -7.9381 3.9974 24 6 0.3053 -5.4416 4.1227 25 6 -0.6538 -4.4475 4.1834 26 6 -0.6798 -3.4624 3.2179 27 6 0.2519 -3.4597 2.1885 28 6 0.1587 -2.3626 1.1581 29 1 -0.4850 0.8400 0.0004 30 1 1.0561 -4.1873 -0.6915 31 1 2.7073 -3.5241 -0.8156 32 1 2.4325 -5.5248 0.7607 33 1 3.2028 -4.0856 1.4630 34 1 2.4199 -6.8289 2.0008 35 1 1.9456 -7.3809 3.6252 36 1 3.5978 -5.1077 3.9052 37 1 7.8249 -4.1256 5.4756 38 1 9.0095 -6.4317 5.0396 39 1 0.3287 -6.2178 4.8733 40 1 -1.3794 -4.4421 4.9833 41 1 -1.4304 -2.6872 3.2633 42 1 -0.7177 -2.5273 0.5312 43 1 0.0683 -1.3996 1.6608 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001051288157.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:51:06 Heat of formation + Delta-G solvation = 71.895438 kcal Electronic energy + Delta-G solvation = -27111.481726 eV Core-core repulsion = 23350.943283 eV Total energy + Delta-G solvation = -3760.538443 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.42731 -39.93507 -38.99388 -35.98970 -35.06451 -33.05656 -32.65653 -31.75435 -30.14390 -30.03579 -28.71939 -26.14520 -25.53373 -23.41281 -23.10690 -22.10211 -21.80029 -20.60082 -20.50764 -19.09387 -18.87907 -16.77505 -16.68529 -16.14524 -15.95548 -15.63229 -15.16728 -14.81355 -14.33804 -14.29256 -14.24898 -14.10445 -13.80129 -13.58254 -13.24327 -12.90594 -12.67095 -12.53248 -12.34609 -11.93745 -11.51181 -11.24201 -10.93758 -10.86823 -10.70185 -10.54132 -10.52226 -10.46530 -10.36051 -10.13340 -9.87968 -9.71939 -9.22006 -8.80039 -8.66941 -8.26636 -7.85908 -6.76781 -5.82432 -3.21711 1.15114 1.58983 1.89623 2.39312 2.46891 3.26968 3.37645 3.41774 3.44730 3.47747 4.11073 4.29870 4.47955 4.71141 4.86263 5.00078 5.10920 5.13560 5.28095 5.33483 5.42274 5.51393 5.55333 5.64006 5.72644 5.85647 5.99861 6.14328 6.14703 6.23475 6.25474 6.32167 6.49259 6.56556 6.67478 6.83809 6.86111 6.86389 6.96017 7.12191 7.22729 7.29129 7.46654 7.61620 7.64321 7.77060 7.99998 8.35994 9.16888 9.79288 10.37127 11.28134 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.011080 B = 0.003744 C = 0.003101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2526.464234 B = 7477.563498 C = 9026.187711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.001 3.999 3 Si 0.904 3.096 4 H -0.287 1.287 5 H -0.289 1.289 6 H -0.279 1.279 7 C -0.248 4.248 8 H 0.069 0.931 9 N -0.593 5.593 10 C 0.142 3.858 11 C -0.101 4.101 12 C -0.043 4.043 13 C -0.127 4.127 14 C 0.167 3.833 15 N -0.691 5.691 16 C 0.605 3.395 17 O -0.549 6.549 18 C 0.146 3.854 19 N -0.439 5.439 20 C -0.026 4.026 21 C -0.027 4.027 22 N -0.526 5.526 23 H 0.429 0.571 24 C -0.115 4.115 25 C -0.132 4.132 26 C -0.111 4.111 27 C -0.077 4.077 28 C 0.205 3.795 29 H 0.255 0.745 30 H 0.026 0.974 31 H 0.060 0.940 32 H 0.062 0.938 33 H 0.072 0.928 34 H 0.082 0.918 35 H 0.074 0.926 36 H 0.416 0.584 37 H 0.179 0.821 38 H 0.187 0.813 39 H 0.114 0.886 40 H 0.116 0.884 41 H 0.120 0.880 42 H 0.041 0.959 43 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.315 -13.702 10.761 19.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.197 4.197 3 Si 0.733 3.267 4 H -0.214 1.214 5 H -0.215 1.215 6 H -0.204 1.204 7 C -0.377 4.377 8 H 0.087 0.913 9 N -0.315 5.315 10 C 0.016 3.984 11 C -0.140 4.140 12 C -0.044 4.044 13 C -0.127 4.127 14 C 0.044 3.956 15 N -0.342 5.342 16 C 0.389 3.611 17 O -0.426 6.426 18 C -0.115 4.115 19 N -0.161 5.161 20 C -0.179 4.179 21 C -0.166 4.166 22 N -0.128 5.128 23 H 0.269 0.731 24 C -0.134 4.134 25 C -0.150 4.150 26 C -0.130 4.130 27 C -0.079 4.079 28 C 0.080 3.920 29 H 0.065 0.935 30 H 0.044 0.956 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.090 0.910 34 H 0.100 0.900 35 H 0.092 0.908 36 H 0.253 0.747 37 H 0.196 0.804 38 H 0.204 0.796 39 H 0.132 0.868 40 H 0.134 0.866 41 H 0.138 0.862 42 H 0.058 0.942 43 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 8.496 -13.728 10.448 19.230 hybrid contribution 1.198 0.335 0.172 1.256 sum 9.693 -13.393 10.620 19.649 Atomic orbital electron populations 1.69995 1.05200 1.25620 1.54535 1.24989 0.95370 0.98332 1.00974 0.86272 0.79176 0.83516 0.77709 1.21391 1.21512 1.20439 1.19163 0.92332 0.84291 1.41889 0.91316 1.43986 1.30226 1.01338 1.55917 1.20905 0.97481 0.87242 0.92797 1.21061 0.96794 0.99800 0.96321 1.19444 0.96220 0.93200 0.95524 1.19729 0.98134 0.97515 0.97359 1.20259 0.80646 0.94685 0.99967 1.45790 1.09390 1.16952 1.62079 1.16457 0.81438 0.84837 0.78382 1.90830 1.84495 1.17945 1.49344 1.22704 0.89721 0.89490 1.09632 1.70268 1.18141 1.15518 1.12197 1.22550 0.90522 0.98428 1.06426 1.22997 0.96683 0.92404 1.04530 1.42951 1.09417 1.14957 1.45482 0.73131 1.20750 0.95971 0.99072 0.97616 1.20929 0.99204 0.95553 0.99333 1.21203 0.98848 0.98491 0.94442 1.21032 0.93067 0.96966 0.96798 1.19768 0.89102 0.94331 0.88846 0.93536 0.95566 0.92137 0.91982 0.91015 0.90015 0.90767 0.74690 0.80361 0.79631 0.86804 0.86626 0.86223 0.94153 0.88514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.85 11.10 55.49 0.62 -25.23 16 2 C 0.00 0.04 4.99 -17.43 -0.09 -0.05 16 3 Si 0.90 21.59 29.58 -169.99 -5.03 16.56 16 4 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 6 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.25 -6.74 9.69 -15.06 -0.15 -6.88 16 8 H 0.07 1.84 7.88 -52.49 -0.41 1.42 16 9 N -0.59 -14.76 2.97 -173.94 -0.52 -15.28 16 10 C 0.14 2.97 6.52 -3.75 -0.02 2.95 16 11 C -0.10 -1.80 5.24 -28.04 -0.15 -1.95 16 12 C -0.04 -0.78 5.76 -104.60 -0.60 -1.38 16 13 C -0.13 -1.92 5.26 -104.47 -0.55 -2.47 16 14 C 0.17 2.25 5.10 -5.19 -0.03 2.22 16 15 N -0.69 -9.42 5.52 -62.57 -0.35 -9.76 16 16 C 0.61 8.48 7.81 -12.53 -0.10 8.38 16 17 O -0.55 -8.61 17.09 5.27 0.09 -8.52 16 18 C 0.15 1.85 7.95 -154.52 -1.23 0.63 16 19 N -0.44 -5.83 10.89 -11.26 -0.12 -5.95 16 20 C -0.03 -0.26 11.85 -17.96 -0.21 -0.47 16 21 C -0.03 -0.20 12.00 -16.93 -0.20 -0.41 16 22 N -0.53 -4.86 6.14 -10.78 -0.07 -4.93 16 23 H 0.43 2.99 8.96 -40.82 -0.37 2.62 16 24 C -0.12 -1.63 9.65 -39.69 -0.38 -2.01 16 25 C -0.13 -1.93 10.05 -39.67 -0.40 -2.33 16 26 C -0.11 -1.91 9.62 -39.46 -0.38 -2.29 16 27 C -0.08 -1.53 5.82 -104.56 -0.61 -2.13 16 28 C 0.21 4.86 4.85 -5.05 -0.02 4.84 16 29 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 30 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.06 1.23 7.96 -51.93 -0.41 0.81 16 32 H 0.06 0.98 6.25 -51.93 -0.32 0.65 16 33 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 34 H 0.08 1.13 6.34 -51.93 -0.33 0.80 16 35 H 0.07 0.93 7.99 -51.93 -0.41 0.51 16 36 H 0.42 5.86 8.14 -40.82 -0.33 5.53 16 37 H 0.18 1.31 8.06 -52.48 -0.42 0.89 16 38 H 0.19 0.60 8.06 -52.49 -0.42 0.18 16 39 H 0.11 1.33 8.02 -52.49 -0.42 0.91 16 40 H 0.12 1.38 8.06 -52.49 -0.42 0.96 16 41 H 0.12 1.94 8.05 -52.49 -0.42 1.51 16 42 H 0.04 1.02 8.14 -51.93 -0.42 0.60 16 43 H 0.10 2.54 6.34 -51.93 -0.33 2.21 16 LS Contribution 359.66 15.07 5.42 5.42 Total: -1.00 -32.38 359.66 -10.51 -42.89 By element: Atomic # 1 Polarization: 13.59 SS G_CDS: -5.44 Total: 8.15 kcal Atomic # 6 Polarization: 1.76 SS G_CDS: -5.12 Total: -3.36 kcal Atomic # 7 Polarization: -60.71 SS G_CDS: -0.44 Total: -61.15 kcal Atomic # 8 Polarization: -8.61 SS G_CDS: 0.09 Total: -8.52 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.03 Total: 16.56 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -32.38 -10.51 -42.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051288157.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.788 kcal (2) G-P(sol) polarization free energy of solvation -32.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.893 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds