Wall clock time and date at job start Tue Mar 31 2020 14:51:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86803 * 119.99829 * 2 1 4 4 H 1.48506 * 109.46867 * 269.99867 * 3 2 1 5 5 H 1.48496 * 109.47114 * 29.99979 * 3 2 1 6 6 H 1.48501 * 109.47260 * 150.00313 * 3 2 1 7 7 C 1.38812 * 120.00629 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00661 * 164.26578 * 7 2 1 9 9 N 1.36937 * 119.99699 * 344.27511 * 7 2 1 10 10 C 1.47232 * 121.33084 * 155.41524 * 9 7 2 11 11 C 1.52788 * 107.90740 * 115.78903 * 10 9 7 12 12 C 1.50595 * 110.91403 * 47.34906 * 11 10 9 13 13 C 1.38980 * 117.63081 * 160.05931 * 12 11 10 14 14 C 1.50694 * 119.71015 * 359.29125 * 13 12 11 15 15 N 1.46505 * 109.47479 * 79.72341 * 14 13 12 16 16 C 1.34780 * 119.99954 * 179.97438 * 15 14 13 17 17 O 1.21605 * 120.00091 * 359.97438 * 16 15 14 18 18 C 1.47403 * 119.99513 * 180.02562 * 16 15 14 19 19 N 1.31615 * 125.86732 * 0.02562 * 18 16 15 20 20 C 1.33096 * 109.09597 * 179.97438 * 19 18 16 21 21 C 1.35564 * 108.35343 * 359.97438 * 20 19 18 22 22 N 1.35405 * 107.15639 * 0.02562 * 21 20 19 23 23 H 0.96999 * 126.43653 * 179.97438 * 22 21 20 24 24 C 1.37907 * 120.57982 * 179.01177 * 13 12 11 25 25 C 1.38266 * 119.82855 * 0.33237 * 24 13 12 26 26 C 1.37959 * 119.71597 * 0.26241 * 25 24 13 27 27 C 1.37676 * 122.85196 * 340.07925 * 12 11 10 28 28 C 1.46682 * 121.32925 * 335.38743 * 9 7 2 29 29 H 0.96994 * 120.00460 * 359.97438 * 1 2 3 30 30 H 1.09000 * 109.76997 * 235.39219 * 10 9 7 31 31 H 1.08998 * 109.76784 * 356.18719 * 10 9 7 32 32 H 1.08998 * 109.20003 * 167.88651 * 11 10 9 33 33 H 1.09001 * 109.20345 * 287.22919 * 11 10 9 34 34 H 1.09000 * 109.47398 * 319.72325 * 14 13 12 35 35 H 1.09004 * 109.47099 * 199.72524 * 14 13 12 36 36 H 0.96998 * 119.99667 * 0.02562 * 15 14 13 37 37 H 1.08008 * 125.82681 * 179.97438 * 20 19 18 38 38 H 1.07997 * 126.42384 * 180.02562 * 21 20 19 39 39 H 1.08002 * 120.09150 * 180.35873 * 24 13 12 40 40 H 1.08000 * 120.14409 * 180.28027 * 25 24 13 41 41 H 1.07998 * 119.75056 * 179.83393 * 26 25 24 42 42 H 1.09002 * 109.43549 * 104.34112 * 28 9 7 43 43 H 1.09007 * 109.43493 * 344.47956 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0464 -1.4002 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4403 0.7000 7 6 2.0104 -1.2021 0.0005 8 1 3.0599 -1.2197 -0.2531 9 7 1.3642 -2.3657 0.3225 10 6 1.8520 -3.6699 -0.1558 11 6 2.2729 -4.4897 1.0628 12 6 1.2162 -4.4409 2.1346 13 6 1.2323 -5.4390 3.1016 14 6 2.2757 -6.5243 3.0374 15 7 3.5400 -6.0190 3.5782 16 6 4.6225 -6.8208 3.6223 17 8 4.5496 -7.9638 3.2136 18 6 5.8944 -6.3125 4.1670 19 7 6.1018 -5.1018 4.6396 20 6 7.3661 -5.0027 5.0434 21 6 7.9800 -6.1905 4.8197 22 7 7.0605 -7.0178 4.2688 23 1 7.2029 -7.9381 3.9974 24 6 0.3053 -5.4416 4.1227 25 6 -0.6538 -4.4475 4.1834 26 6 -0.6798 -3.4624 3.2179 27 6 0.2519 -3.4597 2.1885 28 6 0.1587 -2.3626 1.1581 29 1 -0.4850 0.8400 0.0004 30 1 1.0561 -4.1873 -0.6915 31 1 2.7073 -3.5241 -0.8156 32 1 2.4325 -5.5248 0.7607 33 1 3.2028 -4.0856 1.4630 34 1 2.4199 -6.8289 2.0008 35 1 1.9456 -7.3809 3.6252 36 1 3.5978 -5.1077 3.9052 37 1 7.8249 -4.1256 5.4756 38 1 9.0095 -6.4317 5.0396 39 1 0.3287 -6.2178 4.8733 40 1 -1.3794 -4.4421 4.9833 41 1 -1.4304 -2.6872 3.2633 42 1 -0.7177 -2.5273 0.5312 43 1 0.0683 -1.3996 1.6608 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001051288157.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:51:06 Heat of formation + Delta-G solvation = 50.806994 kcal Electronic energy + Delta-G solvation = -27112.396189 eV Core-core repulsion = 23350.943283 eV Total energy + Delta-G solvation = -3761.452907 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.19005 -41.19054 -40.16265 -37.65973 -36.22164 -34.49350 -33.81109 -33.09255 -31.77167 -31.03875 -30.11522 -27.46649 -27.19852 -24.81893 -24.31512 -23.74989 -22.52004 -21.78294 -21.47629 -20.61766 -19.86963 -18.64930 -17.66912 -17.36049 -16.97615 -16.86767 -16.50225 -16.38124 -15.92896 -15.45575 -15.31612 -15.20930 -14.91630 -14.71963 -14.56526 -14.41598 -14.12827 -13.96573 -13.57947 -13.36633 -13.25788 -12.81167 -12.73599 -12.52693 -12.39474 -12.17788 -11.85545 -11.63810 -11.56693 -11.33685 -11.32386 -11.30946 -10.67791 -10.26833 -9.57368 -9.54307 -9.31266 -8.77522 -7.90966 -5.33384 0.31389 0.33347 0.57615 1.45684 1.47490 1.57341 1.61442 1.64413 2.35385 2.49468 2.54562 2.94877 3.26250 3.31364 3.61595 3.67585 3.93561 4.02668 4.06823 4.15433 4.34435 4.36434 4.38777 4.48688 4.54746 4.58881 4.73569 4.75912 4.82692 4.96737 4.99334 5.12354 5.14914 5.16412 5.22653 5.39435 5.45347 5.58664 5.61500 5.63477 5.70521 5.95273 6.15036 6.18251 6.31258 6.31718 6.78620 7.01034 7.10402 7.79063 8.34097 9.17853 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.011080 B = 0.003744 C = 0.003101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2526.464234 B = 7477.563498 C = 9026.187711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.049 4.049 3 Si 0.968 3.032 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.272 1.272 7 C -0.261 4.261 8 H 0.069 0.931 9 N -0.611 5.611 10 C 0.138 3.862 11 C -0.086 4.086 12 C -0.058 4.058 13 C -0.118 4.118 14 C 0.171 3.829 15 N -0.691 5.691 16 C 0.606 3.394 17 O -0.572 6.572 18 C 0.108 3.892 19 N -0.468 5.468 20 C -0.056 4.056 21 C 0.009 3.991 22 N -0.517 5.517 23 H 0.440 0.560 24 C -0.102 4.102 25 C -0.121 4.121 26 C -0.121 4.121 27 C -0.108 4.108 28 C 0.221 3.779 29 H 0.251 0.749 30 H 0.025 0.975 31 H 0.061 0.939 32 H 0.086 0.914 33 H 0.063 0.937 34 H 0.078 0.922 35 H 0.092 0.908 36 H 0.414 0.586 37 H 0.198 0.802 38 H 0.236 0.764 39 H 0.151 0.849 40 H 0.151 0.849 41 H 0.119 0.881 42 H 0.007 0.993 43 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.294 -15.590 12.972 23.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.244 4.244 3 Si 0.796 3.204 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.198 1.198 7 C -0.391 4.391 8 H 0.087 0.913 9 N -0.334 5.334 10 C 0.012 3.988 11 C -0.124 4.124 12 C -0.059 4.059 13 C -0.118 4.118 14 C 0.049 3.951 15 N -0.341 5.341 16 C 0.392 3.608 17 O -0.451 6.451 18 C -0.152 4.152 19 N -0.192 5.192 20 C -0.209 4.209 21 C -0.131 4.131 22 N -0.120 5.120 23 H 0.281 0.719 24 C -0.120 4.120 25 C -0.139 4.139 26 C -0.140 4.140 27 C -0.110 4.110 28 C 0.096 3.904 29 H 0.060 0.940 30 H 0.043 0.957 31 H 0.079 0.921 32 H 0.105 0.895 33 H 0.081 0.919 34 H 0.096 0.904 35 H 0.110 0.890 36 H 0.250 0.750 37 H 0.215 0.785 38 H 0.252 0.748 39 H 0.169 0.831 40 H 0.169 0.831 41 H 0.137 0.863 42 H 0.025 0.975 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 10.471 -15.655 12.651 22.688 hybrid contribution 0.667 0.852 -0.454 1.173 sum 11.139 -14.803 12.197 22.180 Atomic orbital electron populations 1.70161 1.06535 1.25948 1.55719 1.25744 0.96146 1.01330 1.01216 0.85272 0.78013 0.79502 0.77661 1.20931 1.21648 1.19751 1.19478 0.92588 0.85576 1.41480 0.91345 1.44235 1.30421 1.02134 1.56629 1.21056 0.97269 0.86094 0.94346 1.20859 0.96359 1.00304 0.94920 1.19466 0.95900 0.93887 0.96599 1.19814 0.98681 0.96729 0.96616 1.20237 0.80233 0.94397 1.00224 1.45747 1.09511 1.16776 1.62053 1.16610 0.81911 0.84458 0.77861 1.90804 1.84981 1.18758 1.50572 1.22383 0.90326 0.90200 1.12281 1.70182 1.20136 1.16140 1.12709 1.23097 0.89912 1.00409 1.07449 1.23775 0.97826 0.90804 1.00733 1.43028 1.08741 1.15508 1.44757 0.71909 1.21199 0.94367 0.99168 0.97305 1.21282 0.99575 0.94145 0.98866 1.21297 0.98422 0.99643 0.94653 1.20679 0.95837 0.97038 0.97410 1.19327 0.87678 0.94410 0.89020 0.93964 0.95712 0.92061 0.89548 0.91863 0.90396 0.88960 0.75012 0.78466 0.74792 0.83122 0.83093 0.86305 0.97529 0.92058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.94 11.10 21.65 0.24 -55.70 16 2 C -0.05 -2.80 4.99 84.86 0.42 -2.37 16 3 Si 0.97 45.59 29.58 68.60 2.03 47.62 16 4 H -0.28 -13.03 7.11 99.48 0.71 -12.33 16 5 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 6 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 7 C -0.26 -14.78 9.69 84.03 0.81 -13.96 16 8 H 0.07 3.77 7.88 -2.91 -0.02 3.75 16 9 N -0.61 -31.95 2.97 -704.23 -2.09 -34.05 16 10 C 0.14 5.95 6.52 86.17 0.56 6.51 16 11 C -0.09 -3.09 5.24 29.74 0.16 -2.94 16 12 C -0.06 -2.07 5.76 -19.85 -0.11 -2.19 16 13 C -0.12 -3.34 5.26 -19.77 -0.10 -3.44 16 14 C 0.17 4.25 5.10 85.63 0.44 4.69 16 15 N -0.69 -17.96 5.52 -470.12 -2.59 -20.56 16 16 C 0.61 16.37 7.81 86.66 0.68 17.05 16 17 O -0.57 -17.28 17.09 -4.05 -0.07 -17.34 16 18 C 0.11 2.60 7.95 136.28 1.08 3.69 16 19 N -0.47 -11.94 10.89 -189.53 -2.06 -14.01 16 20 C -0.06 -0.99 11.85 83.88 0.99 0.01 16 21 C 0.01 0.10 12.00 83.52 1.00 1.11 16 22 N -0.52 -8.31 6.14 -188.02 -1.16 -9.46 16 23 H 0.44 5.05 8.96 -92.71 -0.83 4.22 16 24 C -0.10 -2.52 9.65 22.20 0.21 -2.30 16 25 C -0.12 -3.19 10.05 22.21 0.22 -2.97 16 26 C -0.12 -4.16 9.62 22.35 0.22 -3.95 16 27 C -0.11 -4.42 5.82 -19.82 -0.12 -4.53 16 28 C 0.22 11.20 4.85 85.63 0.42 11.61 16 29 H 0.25 14.47 8.31 -92.71 -0.77 13.70 16 30 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.06 2.56 7.96 -2.39 -0.02 2.54 16 32 H 0.09 2.65 6.25 -2.39 -0.01 2.64 16 33 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 34 H 0.08 2.02 6.34 -2.39 -0.02 2.00 16 35 H 0.09 2.00 7.99 -2.39 -0.02 1.98 16 36 H 0.41 11.34 8.14 -92.71 -0.76 10.58 16 37 H 0.20 2.44 8.06 -2.91 -0.02 2.42 16 38 H 0.24 0.21 8.06 -2.91 -0.02 0.19 16 39 H 0.15 2.70 8.02 -2.91 -0.02 2.68 16 40 H 0.15 2.95 8.06 -2.91 -0.02 2.93 16 41 H 0.12 3.97 8.05 -2.91 -0.02 3.95 16 42 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 43 H 0.06 3.46 6.34 -2.38 -0.02 3.45 16 Total: -1.00 -74.31 359.66 0.66 -73.65 By element: Atomic # 1 Polarization: 24.34 SS G_CDS: -0.52 Total: 23.83 kcal Atomic # 6 Polarization: -0.87 SS G_CDS: 6.88 Total: 6.01 kcal Atomic # 7 Polarization: -126.10 SS G_CDS: -7.67 Total: -133.77 kcal Atomic # 8 Polarization: -17.28 SS G_CDS: -0.07 Total: -17.34 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 2.03 Total: 47.62 kcal Total: -74.31 0.66 -73.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051288157.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.460 kcal (2) G-P(sol) polarization free energy of solvation -74.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.653 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds