Wall clock time and date at job start Tue Mar 31 2020 15:02:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86800 * 119.99647 * 2 1 4 4 H 1.48499 * 109.47415 * 266.62733 * 3 2 1 5 5 H 1.48502 * 109.47378 * 26.63138 * 3 2 1 6 6 H 1.48503 * 109.46928 * 146.63041 * 3 2 1 7 7 C 1.38810 * 120.00154 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00256 * 343.51680 * 7 2 1 9 9 N 1.36940 * 120.00189 * 163.51827 * 7 2 1 10 10 C 1.46677 * 121.31598 * 331.53258 * 9 7 2 11 11 C 1.50813 * 109.68825 * 224.40915 * 10 9 7 12 12 C 1.38836 * 117.81600 * 168.71173 * 11 10 9 13 13 C 1.37962 * 120.50305 * 178.82568 * 12 11 10 14 14 C 1.38266 * 119.71483 * 0.02562 * 13 12 11 15 15 C 1.37904 * 119.83200 * 0.25656 * 14 13 12 16 16 C 1.37676 * 122.33392 * 348.05032 * 11 10 9 17 17 C 1.50603 * 122.84098 * 2.11359 * 16 11 10 18 18 C 1.47217 * 121.31828 * 151.50160 * 9 7 2 19 19 H 1.09005 * 109.77247 * 235.51703 * 18 9 7 20 20 C 1.52993 * 109.77300 * 356.25455 * 18 9 7 21 21 N 1.46496 * 109.47368 * 305.00229 * 20 18 9 22 22 C 1.34782 * 119.99978 * 179.97438 * 21 20 18 23 23 O 1.21568 * 119.99833 * 0.02562 * 22 21 20 24 24 C 1.47705 * 119.99612 * 179.97438 * 22 21 20 25 25 C 1.41508 * 126.51641 * 179.97438 * 24 22 21 26 26 C 1.35363 * 105.50303 * 179.97438 * 25 24 22 27 27 N 1.35036 * 107.22923 * 0.02562 * 26 25 24 28 28 H 0.97004 * 124.88154 * 179.97438 * 27 26 25 29 29 N 1.28461 * 110.23156 * 359.74526 * 27 26 25 30 30 H 0.97004 * 120.00365 * 359.97438 * 1 2 3 31 31 H 1.08994 * 109.44269 * 104.34386 * 10 9 7 32 32 H 1.08996 * 109.40083 * 344.44875 * 10 9 7 33 33 H 1.07995 * 119.74979 * 358.80168 * 12 11 10 34 34 H 1.07992 * 120.14127 * 179.97438 * 13 12 11 35 35 H 1.08000 * 120.08090 * 180.28291 * 14 13 12 36 36 H 1.08003 * 119.71171 * 180.02562 * 15 14 13 37 37 H 1.08999 * 109.20397 * 99.71500 * 17 16 11 38 38 H 1.09000 * 109.19937 * 219.01801 * 17 16 11 39 39 H 1.09002 * 109.46891 * 65.00050 * 20 18 9 40 40 H 1.09000 * 109.47337 * 184.99349 * 20 18 9 41 41 H 0.96998 * 119.99976 * 359.97438 * 21 20 18 42 42 H 1.07995 * 127.24672 * 0.02562 * 25 24 22 43 43 H 1.08000 * 126.38441 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.5689 2.0054 -1.3976 5 1 1.4137 2.6723 0.6276 6 1 3.5102 1.4619 0.7701 7 6 2.0102 -1.2021 -0.0005 8 1 1.5036 -2.1183 0.2644 9 7 3.3374 -1.2263 -0.3370 10 6 3.9100 -0.2340 -1.2529 11 6 4.8120 -0.9211 -2.2472 12 6 5.2544 -0.1843 -3.3376 13 6 6.1009 -0.7505 -4.2683 14 6 6.5109 -2.0619 -4.1136 15 6 6.0674 -2.7965 -3.0341 16 6 5.2110 -2.2302 -2.0974 17 6 4.7473 -3.1002 -0.9589 18 6 4.2462 -2.2490 0.2067 19 1 5.0899 -1.7673 0.7009 20 6 3.4949 -3.1299 1.2069 21 7 2.8858 -2.2871 2.2388 22 6 2.1688 -2.8496 3.2318 23 8 2.0280 -4.0565 3.2714 24 6 1.5552 -1.9998 4.2724 25 6 0.7791 -2.4411 5.3704 26 6 0.4366 -1.3191 6.0456 27 7 0.9784 -0.2735 5.3848 28 1 0.8909 0.6556 5.6495 29 7 1.6304 -0.6866 4.3579 30 1 -0.4851 0.8400 0.0004 31 1 4.4866 0.4950 -0.6836 32 1 3.1057 0.2749 -1.7842 33 1 4.9333 0.8397 -3.4583 34 1 6.4412 -0.1721 -5.1145 35 1 7.1771 -2.5096 -4.8362 36 1 6.3892 -3.8205 -2.9149 37 1 3.9392 -3.7442 -1.3059 38 1 5.5778 -3.7194 -0.6197 39 1 2.7159 -3.6873 0.6866 40 1 4.1916 -3.8273 1.6719 41 1 2.9985 -1.3242 2.2074 42 1 0.5163 -3.4589 5.6179 43 1 -0.1590 -1.2693 6.9452 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054033627.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:02:42 Heat of formation + Delta-G solvation = 99.878302 kcal Electronic energy + Delta-G solvation = -27837.983114 eV Core-core repulsion = 24078.658099 eV Total energy + Delta-G solvation = -3759.325015 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.29205 -39.65342 -38.62836 -36.67950 -33.76727 -32.92307 -31.79140 -31.55014 -30.64126 -30.23253 -29.32409 -25.91564 -25.54442 -23.44432 -22.92353 -21.73685 -21.45119 -20.92805 -19.58489 -19.09350 -18.29960 -16.91116 -16.46205 -16.02793 -15.50503 -15.35556 -15.08351 -14.94450 -14.53377 -14.35707 -13.92981 -13.64425 -13.51230 -13.40630 -12.89564 -12.84760 -12.57482 -12.50214 -12.33535 -12.10155 -11.74274 -11.43600 -11.15380 -10.99268 -10.67720 -10.60381 -10.47961 -10.22988 -9.91206 -9.58388 -9.46568 -9.12119 -8.95434 -8.74091 -8.42445 -8.18195 -8.11065 -7.03718 -5.96825 -3.38384 1.70834 1.75115 2.02699 2.42284 3.12524 3.25652 3.41235 3.42996 3.84670 4.07806 4.11510 4.46516 4.72556 4.90150 5.02172 5.10092 5.15540 5.29258 5.30524 5.41082 5.56650 5.61875 5.71166 5.80213 5.85565 5.91551 5.98136 5.99591 6.05065 6.17800 6.27309 6.33058 6.37139 6.39434 6.52307 6.64073 6.75368 6.79736 6.85946 7.11333 7.17095 7.22844 7.38038 7.85276 8.06454 8.30500 8.42163 8.85277 8.93367 9.65080 10.00777 11.18069 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.016036 B = 0.004260 C = 0.003594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1745.603908 B = 6571.574956 C = 7789.167806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.033 3.967 3 Si 0.879 3.121 4 H -0.288 1.288 5 H -0.305 1.305 6 H -0.270 1.270 7 C -0.257 4.257 8 H 0.095 0.905 9 N -0.601 5.601 10 C 0.156 3.844 11 C -0.075 4.075 12 C -0.124 4.124 13 C -0.129 4.129 14 C -0.133 4.133 15 C -0.125 4.125 16 C -0.058 4.058 17 C -0.092 4.092 18 C 0.160 3.840 19 H 0.047 0.953 20 C 0.136 3.864 21 N -0.678 5.678 22 C 0.599 3.401 23 O -0.557 6.557 24 C 0.000 4.000 25 C -0.183 4.183 26 C -0.025 4.025 27 N -0.387 5.387 28 H 0.443 0.557 29 N -0.247 5.247 30 H 0.262 0.738 31 H 0.040 0.960 32 H 0.086 0.914 33 H 0.116 0.884 34 H 0.115 0.885 35 H 0.114 0.886 36 H 0.116 0.884 37 H 0.081 0.919 38 H 0.069 0.931 39 H 0.073 0.927 40 H 0.063 0.937 41 H 0.417 0.583 42 H 0.159 0.841 43 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.260 -0.779 4.728 9.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.167 4.167 3 Si 0.709 3.291 4 H -0.216 1.216 5 H -0.233 1.233 6 H -0.195 1.195 7 C -0.385 4.385 8 H 0.112 0.888 9 N -0.326 5.326 10 C 0.031 3.969 11 C -0.077 4.077 12 C -0.142 4.142 13 C -0.147 4.147 14 C -0.151 4.151 15 C -0.144 4.144 16 C -0.059 4.059 17 C -0.131 4.131 18 C 0.054 3.946 19 H 0.064 0.936 20 C 0.012 3.988 21 N -0.328 5.328 22 C 0.383 3.617 23 O -0.435 6.435 24 C -0.162 4.162 25 C -0.211 4.211 26 C -0.169 4.169 27 N -0.101 5.101 28 H 0.287 0.713 29 N -0.083 5.083 30 H 0.072 0.928 31 H 0.057 0.943 32 H 0.104 0.896 33 H 0.134 0.866 34 H 0.133 0.867 35 H 0.132 0.868 36 H 0.134 0.866 37 H 0.099 0.901 38 H 0.087 0.913 39 H 0.091 0.909 40 H 0.081 0.919 41 H 0.256 0.744 42 H 0.177 0.823 43 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 8.433 -0.660 4.221 9.454 hybrid contribution -0.119 1.458 0.268 1.487 sum 8.314 0.797 4.490 9.482 Atomic orbital electron populations 1.69788 1.05614 1.26353 1.52573 1.25231 0.95107 0.97171 0.99173 0.87117 0.79583 0.85087 0.77284 1.21608 1.23295 1.19541 1.18857 0.82445 0.94767 1.42403 0.88782 1.44371 1.06513 1.32172 1.49523 1.20405 0.94942 0.91710 0.89839 1.20448 0.97079 0.94010 0.96161 1.21105 0.98427 0.99860 0.94830 1.20949 0.98970 0.95575 0.99174 1.20910 1.01148 0.94779 0.98273 1.21145 0.98725 0.99508 0.94972 1.19476 0.96226 0.93736 0.96419 1.20888 1.00504 0.97296 0.94411 1.20749 0.92440 0.89925 0.91512 0.93573 1.21265 0.96688 0.92587 0.88255 1.45713 1.50844 1.12141 1.24141 1.16807 0.78314 0.86167 0.80403 1.90719 1.62120 1.13771 1.76911 1.22065 1.04912 0.89834 0.99385 1.21757 1.03426 0.99788 0.96176 1.22847 1.04969 0.87434 1.01698 1.43371 1.37846 1.10120 1.18770 0.71341 1.73684 1.15097 1.13650 1.05833 0.92817 0.94269 0.89617 0.86597 0.86716 0.86790 0.86635 0.90109 0.91284 0.90921 0.91933 0.74446 0.82297 0.80264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.68 13.97 55.49 0.78 -25.90 16 2 C 0.03 0.90 5.30 -17.43 -0.09 0.81 16 3 Si 0.88 21.33 24.16 -169.99 -4.11 17.22 16 4 H -0.29 -6.81 6.47 56.52 0.37 -6.44 16 5 H -0.30 -7.65 7.11 56.52 0.40 -7.25 16 6 H -0.27 -6.34 6.57 56.52 0.37 -5.97 16 7 C -0.26 -6.63 7.39 -15.06 -0.11 -6.74 16 8 H 0.09 2.69 6.41 -52.49 -0.34 2.35 16 9 N -0.60 -13.26 2.63 -166.40 -0.44 -13.69 16 10 C 0.16 3.31 3.97 -5.04 -0.02 3.29 16 11 C -0.08 -1.40 5.82 -104.55 -0.61 -2.01 16 12 C -0.12 -2.04 9.62 -39.46 -0.38 -2.42 16 13 C -0.13 -1.83 10.05 -39.67 -0.40 -2.23 16 14 C -0.13 -1.82 10.04 -39.69 -0.40 -2.22 16 15 C -0.13 -1.83 9.59 -39.43 -0.38 -2.21 16 16 C -0.06 -0.99 5.76 -104.60 -0.60 -1.60 16 17 C -0.09 -1.48 5.21 -28.04 -0.15 -1.63 16 18 C 0.16 2.95 3.02 -67.65 -0.20 2.75 16 19 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 20 C 0.14 2.54 4.45 -4.05 -0.02 2.52 16 21 N -0.68 -13.82 4.01 -61.30 -0.25 -14.06 16 22 C 0.60 12.56 7.82 -12.39 -0.10 12.46 16 23 O -0.56 -12.60 16.93 5.31 0.09 -12.51 16 24 C 0.00 0.00 7.13 -82.76 -0.59 -0.60 16 25 C -0.18 -2.82 10.81 -39.36 -0.43 -3.25 16 26 C -0.03 -0.30 12.02 -17.17 -0.21 -0.51 16 27 N -0.39 -5.08 6.83 30.47 0.21 -4.88 16 28 H 0.44 4.04 8.96 -190.44 -1.71 2.33 16 29 N -0.25 -4.43 11.92 33.42 0.40 -4.04 16 30 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 31 H 0.04 0.84 6.35 -51.93 -0.33 0.51 16 32 H 0.09 1.99 5.10 -51.93 -0.26 1.72 16 33 H 0.12 1.78 8.05 -52.49 -0.42 1.36 16 34 H 0.11 1.33 8.06 -52.49 -0.42 0.90 16 35 H 0.11 1.24 8.06 -52.49 -0.42 0.82 16 36 H 0.12 1.41 8.05 -52.48 -0.42 0.99 16 37 H 0.08 1.36 8.02 -51.93 -0.42 0.94 16 38 H 0.07 0.92 8.10 -51.93 -0.42 0.50 16 39 H 0.07 1.49 7.32 -51.93 -0.38 1.11 16 40 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 41 H 0.42 8.95 7.06 -40.82 -0.29 8.66 16 42 H 0.16 2.22 8.06 -52.49 -0.42 1.80 16 43 H 0.18 1.25 8.06 -52.49 -0.42 0.83 16 LS Contribution 348.87 15.07 5.26 5.26 Total: -1.00 -33.43 348.87 -9.47 -42.90 By element: Atomic # 1 Polarization: 20.02 SS G_CDS: -6.73 Total: 13.29 kcal Atomic # 6 Polarization: 1.09 SS G_CDS: -4.68 Total: -3.59 kcal Atomic # 7 Polarization: -63.27 SS G_CDS: 0.70 Total: -62.57 kcal Atomic # 8 Polarization: -12.60 SS G_CDS: 0.09 Total: -12.51 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -4.11 Total: 17.22 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -33.43 -9.47 -42.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054033627.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.775 kcal (2) G-P(sol) polarization free energy of solvation -33.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.897 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds