Wall clock time and date at job start Tue Mar 31 2020 15:02:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86800 * 119.99647 * 2 1 4 4 H 1.48499 * 109.47415 * 266.62733 * 3 2 1 5 5 H 1.48502 * 109.47378 * 26.63138 * 3 2 1 6 6 H 1.48503 * 109.46928 * 146.63041 * 3 2 1 7 7 C 1.38810 * 120.00154 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00256 * 343.51680 * 7 2 1 9 9 N 1.36940 * 120.00189 * 163.51827 * 7 2 1 10 10 C 1.46677 * 121.31598 * 331.53258 * 9 7 2 11 11 C 1.50813 * 109.68825 * 224.40915 * 10 9 7 12 12 C 1.38836 * 117.81600 * 168.71173 * 11 10 9 13 13 C 1.37962 * 120.50305 * 178.82568 * 12 11 10 14 14 C 1.38266 * 119.71483 * 0.02562 * 13 12 11 15 15 C 1.37904 * 119.83200 * 0.25656 * 14 13 12 16 16 C 1.37676 * 122.33392 * 348.05032 * 11 10 9 17 17 C 1.50603 * 122.84098 * 2.11359 * 16 11 10 18 18 C 1.47217 * 121.31828 * 151.50160 * 9 7 2 19 19 H 1.09005 * 109.77247 * 235.51703 * 18 9 7 20 20 C 1.52993 * 109.77300 * 356.25455 * 18 9 7 21 21 N 1.46496 * 109.47368 * 305.00229 * 20 18 9 22 22 C 1.34782 * 119.99978 * 179.97438 * 21 20 18 23 23 O 1.21568 * 119.99833 * 0.02562 * 22 21 20 24 24 C 1.47705 * 119.99612 * 179.97438 * 22 21 20 25 25 C 1.41508 * 126.51641 * 179.97438 * 24 22 21 26 26 C 1.35363 * 105.50303 * 179.97438 * 25 24 22 27 27 N 1.35036 * 107.22923 * 0.02562 * 26 25 24 28 28 H 0.97004 * 124.88154 * 179.97438 * 27 26 25 29 29 N 1.28461 * 110.23156 * 359.74526 * 27 26 25 30 30 H 0.97004 * 120.00365 * 359.97438 * 1 2 3 31 31 H 1.08994 * 109.44269 * 104.34386 * 10 9 7 32 32 H 1.08996 * 109.40083 * 344.44875 * 10 9 7 33 33 H 1.07995 * 119.74979 * 358.80168 * 12 11 10 34 34 H 1.07992 * 120.14127 * 179.97438 * 13 12 11 35 35 H 1.08000 * 120.08090 * 180.28291 * 14 13 12 36 36 H 1.08003 * 119.71171 * 180.02562 * 15 14 13 37 37 H 1.08999 * 109.20397 * 99.71500 * 17 16 11 38 38 H 1.09000 * 109.19937 * 219.01801 * 17 16 11 39 39 H 1.09002 * 109.46891 * 65.00050 * 20 18 9 40 40 H 1.09000 * 109.47337 * 184.99349 * 20 18 9 41 41 H 0.96998 * 119.99976 * 359.97438 * 21 20 18 42 42 H 1.07995 * 127.24672 * 0.02562 * 25 24 22 43 43 H 1.08000 * 126.38441 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.5689 2.0054 -1.3976 5 1 1.4137 2.6723 0.6276 6 1 3.5102 1.4619 0.7701 7 6 2.0102 -1.2021 -0.0005 8 1 1.5036 -2.1183 0.2644 9 7 3.3374 -1.2263 -0.3370 10 6 3.9100 -0.2340 -1.2529 11 6 4.8120 -0.9211 -2.2472 12 6 5.2544 -0.1843 -3.3376 13 6 6.1009 -0.7505 -4.2683 14 6 6.5109 -2.0619 -4.1136 15 6 6.0674 -2.7965 -3.0341 16 6 5.2110 -2.2302 -2.0974 17 6 4.7473 -3.1002 -0.9589 18 6 4.2462 -2.2490 0.2067 19 1 5.0899 -1.7673 0.7009 20 6 3.4949 -3.1299 1.2069 21 7 2.8858 -2.2871 2.2388 22 6 2.1688 -2.8496 3.2318 23 8 2.0280 -4.0565 3.2714 24 6 1.5552 -1.9998 4.2724 25 6 0.7791 -2.4411 5.3704 26 6 0.4366 -1.3191 6.0456 27 7 0.9784 -0.2735 5.3848 28 1 0.8909 0.6556 5.6495 29 7 1.6304 -0.6866 4.3579 30 1 -0.4851 0.8400 0.0004 31 1 4.4866 0.4950 -0.6836 32 1 3.1057 0.2749 -1.7842 33 1 4.9333 0.8397 -3.4583 34 1 6.4412 -0.1721 -5.1145 35 1 7.1771 -2.5096 -4.8362 36 1 6.3892 -3.8205 -2.9149 37 1 3.9392 -3.7442 -1.3059 38 1 5.5778 -3.7194 -0.6197 39 1 2.7159 -3.6873 0.6866 40 1 4.1916 -3.8273 1.6719 41 1 2.9985 -1.3242 2.2074 42 1 0.5163 -3.4589 5.6179 43 1 -0.1590 -1.2693 6.9452 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054033627.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:02:41 Heat of formation + Delta-G solvation = 76.135217 kcal Electronic energy + Delta-G solvation = -27839.012691 eV Core-core repulsion = 24078.658099 eV Total energy + Delta-G solvation = -3760.354593 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.48268 -41.05024 -40.16131 -38.20771 -35.41474 -34.54869 -33.41450 -32.83416 -31.98434 -31.56031 -30.72822 -27.41276 -27.16384 -25.01457 -24.46567 -22.98049 -22.63773 -22.28914 -21.13465 -20.64253 -19.42987 -18.56736 -17.94237 -17.55407 -17.00048 -16.84393 -16.58475 -16.45068 -15.89826 -15.83424 -15.41902 -15.23501 -14.93855 -14.56976 -14.39725 -14.16844 -14.12636 -13.97140 -13.83577 -13.67694 -13.18466 -12.87203 -12.75529 -12.47022 -12.25611 -12.14604 -11.85184 -11.82467 -11.54846 -11.45588 -11.10970 -10.73217 -10.41319 -10.09116 -9.81612 -9.62315 -9.37986 -8.90362 -8.09875 -5.46599 0.52686 0.54117 0.65353 1.28424 1.31263 1.39065 1.45900 2.04423 2.40750 2.43146 2.58288 2.90864 3.03774 3.27322 3.59543 3.74889 3.94162 4.10080 4.13375 4.16372 4.29027 4.32213 4.37323 4.41464 4.52055 4.57116 4.65891 4.78246 4.81490 4.82716 4.83986 4.87122 4.92633 5.17540 5.19618 5.36672 5.41796 5.59153 5.63992 5.66304 5.79928 5.91966 6.19966 6.22075 6.24859 6.63016 6.87382 6.99362 7.30984 7.61307 8.02440 9.09246 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.016036 B = 0.004260 C = 0.003594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1745.603908 B = 6571.574956 C = 7789.167806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C -0.021 4.021 3 Si 0.936 3.064 4 H -0.281 1.281 5 H -0.317 1.317 6 H -0.259 1.259 7 C -0.222 4.222 8 H 0.058 0.942 9 N -0.613 5.613 10 C 0.160 3.840 11 C -0.107 4.107 12 C -0.138 4.138 13 C -0.125 4.125 14 C -0.125 4.125 15 C -0.124 4.124 16 C -0.076 4.076 17 C -0.085 4.085 18 C 0.160 3.840 19 H 0.060 0.940 20 C 0.138 3.862 21 N -0.682 5.682 22 C 0.591 3.409 23 O -0.584 6.584 24 C -0.039 4.039 25 C -0.210 4.210 26 C 0.014 3.986 27 N -0.372 5.372 28 H 0.461 0.539 29 N -0.283 5.283 30 H 0.257 0.743 31 H 0.038 0.962 32 H 0.058 0.942 33 H 0.118 0.882 34 H 0.145 0.855 35 H 0.151 0.849 36 H 0.144 0.856 37 H 0.069 0.931 38 H 0.106 0.894 39 H 0.046 0.954 40 H 0.089 0.911 41 H 0.411 0.589 42 H 0.166 0.834 43 H 0.239 0.761 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.793 -0.783 4.696 11.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.216 4.216 3 Si 0.766 3.234 4 H -0.208 1.208 5 H -0.246 1.246 6 H -0.183 1.183 7 C -0.351 4.351 8 H 0.075 0.925 9 N -0.338 5.338 10 C 0.035 3.965 11 C -0.108 4.108 12 C -0.156 4.156 13 C -0.143 4.143 14 C -0.142 4.142 15 C -0.142 4.142 16 C -0.076 4.076 17 C -0.124 4.124 18 C 0.055 3.945 19 H 0.078 0.922 20 C 0.014 3.986 21 N -0.330 5.330 22 C 0.376 3.624 23 O -0.465 6.465 24 C -0.198 4.198 25 C -0.238 4.238 26 C -0.131 4.131 27 N -0.088 5.088 28 H 0.308 0.692 29 N -0.120 5.120 30 H 0.066 0.934 31 H 0.056 0.944 32 H 0.076 0.924 33 H 0.136 0.864 34 H 0.163 0.837 35 H 0.169 0.831 36 H 0.162 0.838 37 H 0.087 0.913 38 H 0.124 0.876 39 H 0.064 0.936 40 H 0.107 0.893 41 H 0.248 0.752 42 H 0.184 0.816 43 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges 11.036 -0.659 4.170 11.816 hybrid contribution -0.864 1.378 0.272 1.649 sum 10.172 0.719 4.441 11.123 Atomic orbital electron populations 1.69931 1.07296 1.26592 1.56131 1.25722 0.95512 1.00102 1.00311 0.86168 0.78464 0.81188 0.77565 1.20764 1.24581 1.18319 1.18562 0.83921 0.93058 1.39573 0.92477 1.44443 1.05730 1.33228 1.50366 1.20235 0.94558 0.91603 0.90127 1.20269 0.98475 0.95270 0.96831 1.21246 0.99278 1.00152 0.94956 1.21318 0.97614 0.96242 0.99113 1.21386 1.00373 0.94305 0.98161 1.21453 0.97519 1.00870 0.94348 1.19626 0.97243 0.93261 0.97480 1.20825 1.01330 0.96930 0.93286 1.20945 0.91815 0.89307 0.92422 0.92182 1.21332 0.96345 0.92768 0.88145 1.45779 1.50979 1.11826 1.24433 1.17243 0.77965 0.86288 0.80856 1.90670 1.63166 1.14848 1.77794 1.22005 1.06981 0.90454 1.00407 1.22051 1.04170 1.01572 0.96040 1.23601 1.02480 0.85321 1.01685 1.43499 1.36321 1.11569 1.17441 0.69193 1.73576 1.17001 1.13403 1.08050 0.93405 0.94413 0.92404 0.86428 0.83696 0.83134 0.83803 0.91296 0.87606 0.93554 0.89322 0.75205 0.81600 0.74520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.48 13.97 21.65 0.30 -59.18 16 2 C -0.02 -1.23 5.30 84.86 0.45 -0.78 16 3 Si 0.94 45.89 24.16 68.60 1.66 47.55 16 4 H -0.28 -13.22 6.47 99.48 0.64 -12.58 16 5 H -0.32 -15.99 7.11 99.48 0.71 -15.28 16 6 H -0.26 -11.98 6.57 99.48 0.65 -11.33 16 7 C -0.22 -12.02 7.39 84.03 0.62 -11.40 16 8 H 0.06 3.50 6.41 -2.91 -0.02 3.49 16 9 N -0.61 -27.69 2.63 -680.38 -1.79 -29.47 16 10 C 0.16 6.84 3.97 85.64 0.34 7.18 16 11 C -0.11 -3.90 5.82 -19.82 -0.12 -4.02 16 12 C -0.14 -4.33 9.62 22.35 0.22 -4.12 16 13 C -0.13 -3.11 10.05 22.21 0.22 -2.89 16 14 C -0.12 -2.83 10.04 22.20 0.22 -2.60 16 15 C -0.12 -3.15 9.59 22.37 0.21 -2.94 16 16 C -0.08 -2.44 5.76 -19.85 -0.11 -2.55 16 17 C -0.08 -2.63 5.21 29.75 0.16 -2.47 16 18 C 0.16 5.90 3.02 44.78 0.14 6.03 16 19 H 0.06 2.08 8.14 -2.38 -0.02 2.06 16 20 C 0.14 5.29 4.45 86.38 0.38 5.67 16 21 N -0.68 -29.09 4.01 -466.12 -1.87 -30.96 16 22 C 0.59 26.04 7.82 86.74 0.68 26.72 16 23 O -0.58 -27.70 16.93 -3.93 -0.07 -27.77 16 24 C -0.04 -1.51 7.13 42.46 0.30 -1.21 16 25 C -0.21 -6.38 10.81 22.41 0.24 -6.14 16 26 C 0.01 0.29 12.02 83.54 1.00 1.29 16 27 N -0.37 -9.20 6.83 -57.51 -0.39 -9.60 16 28 H 0.46 7.44 8.96 -219.99 -1.97 5.47 16 29 N -0.28 -10.30 11.92 -48.17 -0.57 -10.87 16 30 H 0.26 15.45 8.31 -92.71 -0.77 14.68 16 31 H 0.04 1.61 6.35 -2.39 -0.02 1.60 16 32 H 0.06 2.76 5.10 -2.39 -0.01 2.75 16 33 H 0.12 3.52 8.05 -2.91 -0.02 3.50 16 34 H 0.15 2.70 8.06 -2.91 -0.02 2.67 16 35 H 0.15 2.35 8.06 -2.91 -0.02 2.33 16 36 H 0.14 2.81 8.05 -2.91 -0.02 2.78 16 37 H 0.07 2.30 8.02 -2.39 -0.02 2.28 16 38 H 0.11 2.48 8.10 -2.39 -0.02 2.46 16 39 H 0.05 2.01 7.32 -2.39 -0.02 1.99 16 40 H 0.09 2.91 8.14 -2.39 -0.02 2.89 16 41 H 0.41 18.45 7.06 -92.71 -0.65 17.80 16 42 H 0.17 4.62 8.06 -2.91 -0.02 4.60 16 43 H 0.24 2.04 8.06 -2.91 -0.02 2.02 16 Total: -1.00 -78.87 348.87 0.56 -78.31 By element: Atomic # 1 Polarization: 37.86 SS G_CDS: -1.67 Total: 36.19 kcal Atomic # 6 Polarization: 0.84 SS G_CDS: 4.96 Total: 5.80 kcal Atomic # 7 Polarization: -135.76 SS G_CDS: -4.32 Total: -140.08 kcal Atomic # 8 Polarization: -27.70 SS G_CDS: -0.07 Total: -27.77 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 1.66 Total: 47.55 kcal Total: -78.87 0.56 -78.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054033627.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.448 kcal (2) G-P(sol) polarization free energy of solvation -78.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.313 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds