Wall clock time and date at job start Tue Mar 31 2020 15:02:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86795 * 120.00192 * 2 1 4 4 H 1.48508 * 109.47198 * 239.99814 * 3 2 1 5 5 H 1.48501 * 109.47252 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47078 * 120.00290 * 3 2 1 7 7 C 1.38815 * 119.99951 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00164 * 190.84617 * 7 2 1 9 9 N 1.36941 * 119.99706 * 10.56237 * 7 2 1 10 10 C 1.46678 * 121.32590 * 28.34895 * 9 7 2 11 11 C 1.50806 * 109.69057 * 135.64961 * 10 9 7 12 12 C 1.38835 * 117.81817 * 191.36513 * 11 10 9 13 13 C 1.37960 * 120.51012 * 180.46710 * 12 11 10 14 14 C 1.38258 * 119.71776 * 0.08113 * 13 12 11 15 15 C 1.37907 * 119.82647 * 359.75517 * 14 13 12 16 16 C 1.37671 * 122.34297 * 11.46178 * 11 10 9 17 17 C 1.50611 * 122.85827 * 358.55999 * 16 11 10 18 18 C 1.47231 * 121.32788 * 208.06285 * 9 7 2 19 19 H 1.08993 * 109.77458 * 124.63871 * 18 9 7 20 20 C 1.53000 * 109.77270 * 3.83714 * 18 9 7 21 21 N 1.46502 * 109.46972 * 55.00220 * 20 18 9 22 22 C 1.34781 * 119.99603 * 179.97438 * 21 20 18 23 23 O 1.21599 * 120.00294 * 359.97438 * 22 21 20 24 24 C 1.47436 * 119.99644 * 180.02562 * 22 21 20 25 25 C 1.41289 * 126.41356 * 0.02674 * 24 22 21 26 26 N 1.30442 * 108.02117 * 179.97438 * 25 24 22 27 27 N 1.39946 * 108.89877 * 359.97438 * 26 25 24 28 28 H 0.96993 * 125.75148 * 179.97438 * 27 26 25 29 29 C 1.34254 * 108.48483 * 359.75030 * 27 26 25 30 30 H 0.97004 * 119.99505 * 359.97438 * 1 2 3 31 31 H 1.09003 * 109.43289 * 255.71348 * 10 9 7 32 32 H 1.09004 * 109.43894 * 15.62350 * 10 9 7 33 33 H 1.08007 * 119.74413 * 0.48622 * 12 11 10 34 34 H 1.07997 * 120.14024 * 180.02562 * 13 12 11 35 35 H 1.07998 * 120.08875 * 179.77745 * 14 13 12 36 36 H 1.07999 * 119.71332 * 179.97438 * 15 14 13 37 37 H 1.09002 * 109.19871 * 140.57184 * 17 16 11 38 38 H 1.08996 * 109.19999 * 259.91945 * 17 16 11 39 39 H 1.09000 * 109.46709 * 175.00239 * 20 18 9 40 40 H 1.08999 * 109.47283 * 295.00365 * 20 18 9 41 41 H 0.96995 * 120.00031 * 0.02562 * 21 20 18 42 42 H 1.07996 * 125.98916 * 359.97438 * 25 24 22 43 43 H 1.08006 * 126.28692 * 180.24660 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0757 -1.2107 0.1754 9 7 1.3429 -2.3779 -0.2185 10 6 0.1188 -2.4218 -1.0255 11 6 0.1746 -3.5963 -1.9698 12 6 -0.7791 -3.6640 -2.9765 13 6 -0.7856 -4.7192 -3.8653 14 6 0.1642 -5.7174 -3.7510 15 6 1.1141 -5.6495 -2.7535 16 6 1.1267 -4.5847 -1.8605 17 6 2.2095 -4.5640 -0.8139 18 6 1.8288 -3.6494 0.3428 19 1 1.0417 -4.1157 0.9352 20 6 3.0554 -3.3925 1.2205 21 7 2.7248 -2.3959 2.2421 22 6 3.6582 -2.0108 3.1348 23 8 4.7747 -2.4908 3.0925 24 6 3.3253 -1.0082 4.1633 25 6 2.0783 -0.3672 4.3371 26 7 2.1815 0.4485 5.3498 27 7 3.4801 0.3691 5.8652 28 1 3.8218 0.8727 6.6204 29 6 4.1715 -0.5254 5.1412 30 1 -0.4849 0.8401 0.0004 31 1 -0.7450 -2.5251 -0.3688 32 1 0.0296 -1.4995 -1.5996 33 1 -1.5214 -2.8845 -3.0648 34 1 -1.5299 -4.7657 -4.6464 35 1 0.1624 -6.5480 -4.4412 36 1 1.8548 -6.4305 -2.6656 37 1 2.3635 -5.5753 -0.4374 38 1 3.1351 -4.2038 -1.2628 39 1 3.3575 -4.3217 1.7036 40 1 3.8732 -3.0217 0.6025 41 1 1.8339 -2.0139 2.2765 42 1 1.1946 -0.5248 3.7366 43 1 5.2016 -0.8121 5.2938 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054034597.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:02:45 Heat of formation + Delta-G solvation = 88.390137 kcal Electronic energy + Delta-G solvation = -27774.166065 eV Core-core repulsion = 24014.342886 eV Total energy + Delta-G solvation = -3759.823179 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.06746 -39.41778 -38.48226 -36.48426 -33.66283 -32.92032 -31.65722 -31.37320 -30.41542 -29.80413 -28.83704 -25.67436 -25.48419 -22.88618 -22.41376 -21.69316 -21.53239 -20.84967 -19.54591 -19.04109 -18.24783 -16.51425 -16.22150 -15.50914 -15.41837 -15.15689 -14.73363 -14.54712 -14.34422 -14.23180 -14.15293 -13.67138 -13.46832 -12.98892 -12.83097 -12.64432 -12.54202 -12.42422 -12.10188 -11.65252 -11.53820 -11.10394 -10.92479 -10.86162 -10.83447 -10.69061 -10.50518 -10.18298 -9.99040 -9.70072 -9.65591 -9.29976 -8.76055 -8.64807 -8.23952 -8.12031 -7.84125 -6.80060 -5.90479 -3.34481 1.76972 1.87700 1.95397 2.48509 2.86266 3.34961 3.40122 3.43720 3.92180 4.06300 4.29945 4.40206 4.95255 5.01903 5.17000 5.24315 5.30731 5.37763 5.48025 5.49397 5.58340 5.59491 5.74515 5.87766 5.96720 6.00422 6.08657 6.14053 6.21398 6.32938 6.39853 6.56864 6.62029 6.63991 6.84195 6.95337 6.97238 7.14882 7.19483 7.20954 7.23659 7.51342 7.65015 7.65992 7.74985 8.27223 8.38148 8.97021 9.09396 9.68597 10.26864 11.18403 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.015255 B = 0.004144 C = 0.003550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1835.003712 B = 6755.811157 C = 7885.669918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.011 3.989 3 Si 0.895 3.105 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.245 4.245 8 H 0.072 0.928 9 N -0.588 5.588 10 C 0.208 3.792 11 C -0.077 4.077 12 C -0.124 4.124 13 C -0.131 4.131 14 C -0.141 4.141 15 C -0.128 4.128 16 C -0.068 4.068 17 C -0.091 4.091 18 C 0.157 3.843 19 H 0.042 0.958 20 C 0.138 3.862 21 N -0.688 5.688 22 C 0.587 3.413 23 O -0.576 6.576 24 C -0.279 4.279 25 C 0.096 3.904 26 N -0.303 5.303 27 N -0.472 5.472 28 H 0.440 0.560 29 C 0.119 3.881 30 H 0.256 0.744 31 H 0.043 0.957 32 H 0.096 0.904 33 H 0.117 0.883 34 H 0.112 0.888 35 H 0.110 0.890 36 H 0.111 0.889 37 H 0.063 0.937 38 H 0.074 0.926 39 H 0.058 0.942 40 H 0.066 0.934 41 H 0.415 0.585 42 H 0.195 0.805 43 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.013 -5.908 3.680 7.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.188 4.188 3 Si 0.725 3.275 4 H -0.211 1.211 5 H -0.216 1.216 6 H -0.207 1.207 7 C -0.374 4.374 8 H 0.090 0.910 9 N -0.311 5.311 10 C 0.083 3.917 11 C -0.079 4.079 12 C -0.142 4.142 13 C -0.149 4.149 14 C -0.159 4.159 15 C -0.146 4.146 16 C -0.068 4.068 17 C -0.130 4.130 18 C 0.050 3.950 19 H 0.060 0.940 20 C 0.014 3.986 21 N -0.338 5.338 22 C 0.374 3.626 23 O -0.458 6.458 24 C -0.294 4.294 25 C -0.093 4.093 26 N -0.124 5.124 27 N -0.177 5.177 28 H 0.284 0.716 29 C -0.033 4.033 30 H 0.066 0.934 31 H 0.060 0.940 32 H 0.114 0.886 33 H 0.135 0.865 34 H 0.130 0.870 35 H 0.128 0.872 36 H 0.129 0.871 37 H 0.082 0.918 38 H 0.092 0.908 39 H 0.076 0.924 40 H 0.084 0.916 41 H 0.253 0.747 42 H 0.212 0.788 43 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 2.038 -5.221 4.360 7.101 hybrid contribution 0.576 0.805 -0.463 1.093 sum 2.614 -4.416 3.897 6.444 Atomic orbital electron populations 1.69941 1.04970 1.25794 1.54207 1.24983 0.95280 0.97891 1.00644 0.86474 0.79043 0.83657 0.78374 1.21114 1.21637 1.20676 1.19080 0.91327 0.83142 1.43872 0.91034 1.44012 1.28355 1.02276 1.56487 1.19782 0.88662 0.92917 0.90386 1.21027 0.93183 0.97257 0.96400 1.21120 0.99206 0.98362 0.95526 1.20948 0.99194 0.95206 0.99543 1.20844 0.96711 0.99173 0.99154 1.21125 0.99044 0.98407 0.96004 1.19492 0.96520 0.93957 0.96821 1.20811 0.96934 0.99512 0.95766 1.20624 0.93969 0.88649 0.91727 0.94004 1.21230 0.97578 0.90615 0.89172 1.45680 1.15765 1.42451 1.29868 1.17166 0.84389 0.80579 0.80437 1.90694 1.21871 1.58191 1.75018 1.20439 0.95388 1.09304 1.04242 1.24284 0.98476 0.92408 0.94086 1.77151 0.96674 1.23951 1.14636 1.46193 1.09643 1.33849 1.28027 0.71632 1.22952 0.98382 0.90442 0.91516 0.93372 0.93956 0.88592 0.86488 0.87039 0.87169 0.87100 0.91823 0.90791 0.92426 0.91570 0.74686 0.78813 0.79558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.16 11.06 55.49 0.61 -22.55 16 2 C 0.01 0.27 5.09 -17.43 -0.09 0.18 16 3 Si 0.89 20.90 29.57 -169.99 -5.03 15.87 16 4 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.25 -5.84 6.97 -15.06 -0.10 -5.94 16 8 H 0.07 1.78 6.17 -52.49 -0.32 1.45 16 9 N -0.59 -12.75 2.86 -166.68 -0.48 -13.23 16 10 C 0.21 4.51 4.80 -5.04 -0.02 4.49 16 11 C -0.08 -1.48 5.82 -104.56 -0.61 -2.08 16 12 C -0.12 -2.12 9.62 -39.46 -0.38 -2.50 16 13 C -0.13 -1.97 10.05 -39.68 -0.40 -2.37 16 14 C -0.14 -2.05 10.04 -39.70 -0.40 -2.45 16 15 C -0.13 -1.98 9.59 -39.43 -0.38 -2.36 16 16 C -0.07 -1.20 5.76 -104.60 -0.60 -1.80 16 17 C -0.09 -1.51 5.19 -28.29 -0.15 -1.65 16 18 C 0.16 2.89 3.00 -67.89 -0.20 2.68 16 19 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 20 C 0.14 2.48 4.44 -4.04 -0.02 2.47 16 21 N -0.69 -12.80 4.00 -61.38 -0.25 -13.04 16 22 C 0.59 11.12 7.81 -12.51 -0.10 11.02 16 23 O -0.58 -12.11 16.90 5.28 0.09 -12.02 16 24 C -0.28 -4.66 6.13 -105.07 -0.64 -5.30 16 25 C 0.10 1.58 11.50 -16.98 -0.20 1.38 16 26 N -0.30 -4.77 12.63 30.86 0.39 -4.38 16 27 N -0.47 -5.73 7.29 30.85 0.22 -5.51 16 28 H 0.44 3.49 8.96 -182.72 -1.64 1.85 16 29 C 0.12 1.59 11.82 -16.57 -0.20 1.39 16 30 H 0.26 6.56 8.31 -40.82 -0.34 6.22 16 31 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.10 2.35 6.47 -51.93 -0.34 2.02 16 33 H 0.12 1.89 8.05 -52.48 -0.42 1.47 16 34 H 0.11 1.39 8.06 -52.49 -0.42 0.96 16 35 H 0.11 1.31 8.06 -52.49 -0.42 0.88 16 36 H 0.11 1.46 8.05 -52.49 -0.42 1.04 16 37 H 0.06 0.90 8.11 -51.93 -0.42 0.48 16 38 H 0.07 1.27 7.99 -51.93 -0.42 0.85 16 39 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 40 H 0.07 1.29 7.30 -51.93 -0.38 0.92 16 41 H 0.42 7.98 6.29 -40.82 -0.26 7.72 16 42 H 0.20 3.12 7.50 -52.49 -0.39 2.73 16 43 H 0.19 1.93 8.06 -52.48 -0.42 1.51 16 LS Contribution 355.08 15.07 5.35 5.35 Total: -1.00 -29.74 355.08 -10.24 -39.99 By element: Atomic # 1 Polarization: 19.04 SS G_CDS: -6.68 Total: 12.36 kcal Atomic # 6 Polarization: 1.64 SS G_CDS: -4.49 Total: -2.84 kcal Atomic # 7 Polarization: -59.21 SS G_CDS: 0.51 Total: -58.71 kcal Atomic # 8 Polarization: -12.11 SS G_CDS: 0.09 Total: -12.02 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.03 Total: 15.87 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -29.74 -10.24 -39.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054034597.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.378 kcal (2) G-P(sol) polarization free energy of solvation -29.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.988 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds