Wall clock time and date at job start Tue Mar 31 2020 15:02:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86795 * 120.00192 * 2 1 4 4 H 1.48508 * 109.47198 * 239.99814 * 3 2 1 5 5 H 1.48501 * 109.47252 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47078 * 120.00290 * 3 2 1 7 7 C 1.38815 * 119.99951 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00164 * 190.84617 * 7 2 1 9 9 N 1.36941 * 119.99706 * 10.56237 * 7 2 1 10 10 C 1.46678 * 121.32590 * 28.34895 * 9 7 2 11 11 C 1.50806 * 109.69057 * 135.64961 * 10 9 7 12 12 C 1.38835 * 117.81817 * 191.36513 * 11 10 9 13 13 C 1.37960 * 120.51012 * 180.46710 * 12 11 10 14 14 C 1.38258 * 119.71776 * 0.08113 * 13 12 11 15 15 C 1.37907 * 119.82647 * 359.75517 * 14 13 12 16 16 C 1.37671 * 122.34297 * 11.46178 * 11 10 9 17 17 C 1.50611 * 122.85827 * 358.55999 * 16 11 10 18 18 C 1.47231 * 121.32788 * 208.06285 * 9 7 2 19 19 H 1.08993 * 109.77458 * 124.63871 * 18 9 7 20 20 C 1.53000 * 109.77270 * 3.83714 * 18 9 7 21 21 N 1.46502 * 109.46972 * 55.00220 * 20 18 9 22 22 C 1.34781 * 119.99603 * 179.97438 * 21 20 18 23 23 O 1.21599 * 120.00294 * 359.97438 * 22 21 20 24 24 C 1.47436 * 119.99644 * 180.02562 * 22 21 20 25 25 C 1.41289 * 126.41356 * 0.02674 * 24 22 21 26 26 N 1.30442 * 108.02117 * 179.97438 * 25 24 22 27 27 N 1.39946 * 108.89877 * 359.97438 * 26 25 24 28 28 H 0.96993 * 125.75148 * 179.97438 * 27 26 25 29 29 C 1.34254 * 108.48483 * 359.75030 * 27 26 25 30 30 H 0.97004 * 119.99505 * 359.97438 * 1 2 3 31 31 H 1.09003 * 109.43289 * 255.71348 * 10 9 7 32 32 H 1.09004 * 109.43894 * 15.62350 * 10 9 7 33 33 H 1.08007 * 119.74413 * 0.48622 * 12 11 10 34 34 H 1.07997 * 120.14024 * 180.02562 * 13 12 11 35 35 H 1.07998 * 120.08875 * 179.77745 * 14 13 12 36 36 H 1.07999 * 119.71332 * 179.97438 * 15 14 13 37 37 H 1.09002 * 109.19871 * 140.57184 * 17 16 11 38 38 H 1.08996 * 109.19999 * 259.91945 * 17 16 11 39 39 H 1.09000 * 109.46709 * 175.00239 * 20 18 9 40 40 H 1.08999 * 109.47283 * 295.00365 * 20 18 9 41 41 H 0.96995 * 120.00031 * 0.02562 * 21 20 18 42 42 H 1.07996 * 125.98916 * 359.97438 * 25 24 22 43 43 H 1.08006 * 126.28692 * 180.24660 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0757 -1.2107 0.1754 9 7 1.3429 -2.3779 -0.2185 10 6 0.1188 -2.4218 -1.0255 11 6 0.1746 -3.5963 -1.9698 12 6 -0.7791 -3.6640 -2.9765 13 6 -0.7856 -4.7192 -3.8653 14 6 0.1642 -5.7174 -3.7510 15 6 1.1141 -5.6495 -2.7535 16 6 1.1267 -4.5847 -1.8605 17 6 2.2095 -4.5640 -0.8139 18 6 1.8288 -3.6494 0.3428 19 1 1.0417 -4.1157 0.9352 20 6 3.0554 -3.3925 1.2205 21 7 2.7248 -2.3959 2.2421 22 6 3.6582 -2.0108 3.1348 23 8 4.7747 -2.4908 3.0925 24 6 3.3253 -1.0082 4.1633 25 6 2.0783 -0.3672 4.3371 26 7 2.1815 0.4485 5.3498 27 7 3.4801 0.3691 5.8652 28 1 3.8218 0.8727 6.6204 29 6 4.1715 -0.5254 5.1412 30 1 -0.4849 0.8401 0.0004 31 1 -0.7450 -2.5251 -0.3688 32 1 0.0296 -1.4995 -1.5996 33 1 -1.5214 -2.8845 -3.0648 34 1 -1.5299 -4.7657 -4.6464 35 1 0.1624 -6.5480 -4.4412 36 1 1.8548 -6.4305 -2.6656 37 1 2.3635 -5.5753 -0.4374 38 1 3.1351 -4.2038 -1.2628 39 1 3.3575 -4.3217 1.7036 40 1 3.8732 -3.0217 0.6025 41 1 1.8339 -2.0139 2.2765 42 1 1.1946 -0.5248 3.7366 43 1 5.2016 -0.8121 5.2938 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054034597.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:02:44 Heat of formation + Delta-G solvation = 70.491232 kcal Electronic energy + Delta-G solvation = -27774.942220 eV Core-core repulsion = 24014.342886 eV Total energy + Delta-G solvation = -3760.599334 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.26005 -40.81519 -39.90930 -37.98911 -35.25387 -34.47479 -32.98772 -32.75050 -31.78266 -31.17219 -30.28279 -27.32183 -26.91316 -24.50907 -23.75116 -22.93022 -22.84848 -22.23721 -20.90229 -20.51534 -19.54392 -18.13330 -17.68530 -16.96003 -16.82951 -16.54062 -16.16149 -15.96528 -15.83782 -15.56911 -15.47282 -15.13503 -14.98274 -14.54362 -14.37606 -14.00325 -13.78183 -13.72897 -13.54389 -13.21341 -13.06383 -12.73453 -12.58240 -12.50059 -12.24499 -12.17438 -12.11280 -11.83237 -11.56388 -11.25021 -10.81014 -10.77939 -10.61655 -9.98098 -9.56503 -9.49786 -9.22283 -8.61095 -7.82770 -5.25679 0.62105 0.62460 0.66540 1.17075 1.43243 1.47146 1.50185 1.85083 2.46807 2.55219 2.66739 3.02220 3.36422 3.56110 3.73663 3.90121 3.97881 4.15093 4.23365 4.27470 4.28875 4.43518 4.44385 4.48488 4.55397 4.70831 4.76144 4.83716 4.88883 4.97477 4.99485 5.25917 5.27960 5.31281 5.35156 5.49178 5.56791 5.70350 5.74035 5.78835 5.79077 6.06124 6.26930 6.31604 6.40317 6.50564 6.87723 7.20008 7.48171 7.85633 8.41412 9.24196 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.015255 B = 0.004144 C = 0.003550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1835.003712 B = 6755.811157 C = 7885.669918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.025 4.025 3 Si 0.936 3.064 4 H -0.291 1.291 5 H -0.297 1.297 6 H -0.284 1.284 7 C -0.226 4.226 8 H 0.063 0.937 9 N -0.598 5.598 10 C 0.223 3.777 11 C -0.108 4.108 12 C -0.138 4.138 13 C -0.128 4.128 14 C -0.132 4.132 15 C -0.127 4.127 16 C -0.083 4.083 17 C -0.085 4.085 18 C 0.159 3.841 19 H 0.043 0.957 20 C 0.143 3.857 21 N -0.692 5.692 22 C 0.586 3.414 23 O -0.600 6.600 24 C -0.316 4.316 25 C 0.087 3.913 26 N -0.322 5.322 27 N -0.448 5.448 28 H 0.460 0.540 29 C 0.146 3.854 30 H 0.248 0.752 31 H 0.016 0.984 32 H 0.060 0.940 33 H 0.114 0.886 34 H 0.141 0.859 35 H 0.147 0.853 36 H 0.140 0.860 37 H 0.096 0.904 38 H 0.068 0.932 39 H 0.078 0.922 40 H 0.049 0.951 41 H 0.411 0.589 42 H 0.186 0.814 43 H 0.222 0.778 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.212 -7.938 3.488 9.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.222 4.222 3 Si 0.767 3.233 4 H -0.218 1.218 5 H -0.223 1.223 6 H -0.211 1.211 7 C -0.356 4.356 8 H 0.081 0.919 9 N -0.322 5.322 10 C 0.098 3.902 11 C -0.109 4.109 12 C -0.156 4.156 13 C -0.146 4.146 14 C -0.150 4.150 15 C -0.145 4.145 16 C -0.084 4.084 17 C -0.124 4.124 18 C 0.053 3.947 19 H 0.061 0.939 20 C 0.019 3.981 21 N -0.340 5.340 22 C 0.375 3.625 23 O -0.485 6.485 24 C -0.331 4.331 25 C -0.101 4.101 26 N -0.144 5.144 27 N -0.156 5.156 28 H 0.309 0.691 29 C -0.008 4.008 30 H 0.058 0.942 31 H 0.033 0.967 32 H 0.078 0.922 33 H 0.132 0.868 34 H 0.159 0.841 35 H 0.165 0.835 36 H 0.158 0.842 37 H 0.115 0.885 38 H 0.087 0.913 39 H 0.097 0.903 40 H 0.067 0.933 41 H 0.247 0.753 42 H 0.203 0.797 43 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges 3.237 -7.250 4.189 8.977 hybrid contribution 0.234 1.367 -0.398 1.443 sum 3.471 -5.882 3.791 7.812 Atomic orbital electron populations 1.70052 1.05587 1.25328 1.56056 1.25327 0.95623 0.99377 1.01864 0.85835 0.77884 0.82009 0.77618 1.21779 1.22300 1.21087 1.19039 0.90850 0.83982 1.41761 0.91935 1.44137 1.28150 1.02934 1.56978 1.19337 0.87818 0.92933 0.90105 1.20793 0.95576 0.97220 0.97319 1.21229 0.99004 0.99493 0.95923 1.21295 0.99857 0.94214 0.99244 1.21318 0.95295 0.99533 0.98846 1.21439 0.99776 0.98031 0.95278 1.19675 0.96339 0.94449 0.97894 1.20755 0.96334 1.00603 0.94673 1.20751 0.93968 0.87402 0.92601 0.93901 1.21220 0.96668 0.91268 0.88950 1.45734 1.15574 1.42622 1.30082 1.17453 0.83886 0.80580 0.80578 1.90663 1.22621 1.59326 1.75862 1.20433 0.96467 1.10534 1.05622 1.24199 0.98506 0.92893 0.94483 1.77091 0.98541 1.24084 1.14691 1.46194 1.08370 1.33093 1.27922 0.69115 1.23400 0.99093 0.88706 0.89591 0.94191 0.96657 0.92212 0.86793 0.84088 0.83487 0.84178 0.88522 0.91312 0.90348 0.93283 0.75251 0.79702 0.76148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.73 11.06 21.65 0.24 -49.49 16 2 C -0.03 -1.31 5.09 84.86 0.43 -0.88 16 3 Si 0.94 44.32 29.57 68.60 2.03 46.35 16 4 H -0.29 -13.92 7.11 99.48 0.71 -13.22 16 5 H -0.30 -14.25 7.11 99.48 0.71 -13.54 16 6 H -0.28 -13.52 7.11 99.48 0.71 -12.81 16 7 C -0.23 -11.15 6.97 84.03 0.59 -10.56 16 8 H 0.06 3.20 6.17 -2.91 -0.02 3.18 16 9 N -0.60 -26.84 2.86 -681.24 -1.95 -28.78 16 10 C 0.22 10.24 4.80 85.63 0.41 10.65 16 11 C -0.11 -4.17 5.82 -19.82 -0.12 -4.29 16 12 C -0.14 -4.71 9.62 22.35 0.22 -4.50 16 13 C -0.13 -3.52 10.05 22.21 0.22 -3.29 16 14 C -0.13 -3.31 10.04 22.20 0.22 -3.08 16 15 C -0.13 -3.50 9.59 22.37 0.21 -3.28 16 16 C -0.08 -2.83 5.76 -19.85 -0.11 -2.94 16 17 C -0.08 -2.69 5.19 29.59 0.15 -2.53 16 18 C 0.16 5.84 3.00 44.62 0.13 5.97 16 19 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 20 C 0.14 5.13 4.44 86.38 0.38 5.51 16 21 N -0.69 -26.21 4.00 -466.36 -1.86 -28.08 16 22 C 0.59 22.23 7.81 86.67 0.68 22.91 16 23 O -0.60 -24.96 16.90 -4.03 -0.07 -25.03 16 24 C -0.32 -10.41 6.13 -20.15 -0.12 -10.53 16 25 C 0.09 2.91 11.50 85.65 0.99 3.89 16 26 N -0.32 -9.92 12.63 -56.28 -0.71 -10.63 16 27 N -0.45 -9.92 7.29 -56.32 -0.41 -10.33 16 28 H 0.46 5.96 8.96 -213.43 -1.91 4.05 16 29 C 0.15 3.57 11.82 84.28 1.00 4.57 16 30 H 0.25 13.37 8.31 -92.71 -0.77 12.60 16 31 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.06 3.13 6.47 -2.38 -0.02 3.11 16 33 H 0.11 3.81 8.05 -2.91 -0.02 3.79 16 34 H 0.14 2.99 8.06 -2.91 -0.02 2.97 16 35 H 0.15 2.63 8.06 -2.91 -0.02 2.61 16 36 H 0.14 3.01 8.05 -2.91 -0.02 2.99 16 37 H 0.10 2.42 8.11 -2.39 -0.02 2.40 16 38 H 0.07 2.26 7.99 -2.39 -0.02 2.24 16 39 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 40 H 0.05 1.93 7.30 -2.39 -0.02 1.91 16 41 H 0.41 16.41 6.29 -92.71 -0.58 15.82 16 42 H 0.19 6.33 7.50 -2.91 -0.02 6.31 16 43 H 0.22 3.80 8.06 -2.91 -0.02 3.77 16 Total: -1.00 -66.52 355.08 1.11 -65.41 By element: Atomic # 1 Polarization: 34.40 SS G_CDS: -1.43 Total: 32.97 kcal Atomic # 6 Polarization: 2.33 SS G_CDS: 5.28 Total: 7.61 kcal Atomic # 7 Polarization: -122.61 SS G_CDS: -4.69 Total: -127.30 kcal Atomic # 8 Polarization: -24.96 SS G_CDS: -0.07 Total: -25.03 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.35 kcal Total: -66.52 1.11 -65.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054034597.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.896 kcal (2) G-P(sol) polarization free energy of solvation -66.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.405 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds