Wall clock time and date at job start Tue Mar 31 2020 15:02:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86797 * 120.00036 * 2 1 4 4 H 1.48497 * 109.47328 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47289 * 300.00401 * 3 2 1 6 6 H 1.48493 * 109.47202 * 60.00429 * 3 2 1 7 7 C 1.38813 * 120.00029 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00120 * 190.92104 * 7 2 1 9 9 N 1.36937 * 119.99825 * 10.91883 * 7 2 1 10 10 C 1.46679 * 121.34110 * 27.99285 * 9 7 2 11 11 C 1.50813 * 109.67588 * 135.59980 * 10 9 7 12 12 C 1.38835 * 117.80394 * 190.90302 * 11 10 9 13 13 C 1.37959 * 120.50582 * 181.14486 * 12 11 10 14 14 C 1.38266 * 119.71505 * 359.96448 * 13 12 11 15 15 C 1.37905 * 119.82688 * 359.76008 * 14 13 12 16 16 C 1.37666 * 122.34242 * 11.56733 * 11 10 9 17 17 C 1.50593 * 122.86441 * 358.55404 * 16 11 10 18 18 C 1.47230 * 121.33612 * 208.01849 * 9 7 2 19 19 H 1.08992 * 109.81746 * 124.56892 * 18 9 7 20 20 C 1.53003 * 109.76727 * 3.80167 * 18 9 7 21 21 N 1.46491 * 109.47300 * 56.54298 * 20 18 9 22 22 C 1.34777 * 120.00291 * 180.27348 * 21 20 18 23 23 O 1.21599 * 119.99677 * 359.72263 * 22 21 20 24 24 C 1.47407 * 120.00020 * 179.71721 * 22 21 20 25 25 N 1.31611 * 125.86766 * 359.70006 * 24 22 21 26 26 C 1.33103 * 109.09548 * 179.82943 * 25 24 22 27 27 C 1.35559 * 108.35123 * 0.42891 * 26 25 24 28 28 N 1.35407 * 107.15926 * 359.73846 * 27 26 25 29 29 H 0.96997 * 126.43543 * 179.97438 * 28 27 26 30 30 H 0.97003 * 119.99639 * 359.97438 * 1 2 3 31 31 H 1.09006 * 109.43764 * 15.53843 * 10 9 7 32 32 H 1.09003 * 109.40704 * 255.64525 * 10 9 7 33 33 H 1.08003 * 119.74575 * 1.11294 * 12 11 10 34 34 H 1.08000 * 120.14140 * 179.97438 * 13 12 11 35 35 H 1.08001 * 120.08488 * 179.75832 * 14 13 12 36 36 H 1.07999 * 119.70491 * 180.02562 * 15 14 13 37 37 H 1.09007 * 109.19939 * 259.77341 * 17 16 11 38 38 H 1.08998 * 109.20239 * 140.48831 * 17 16 11 39 39 H 1.08998 * 109.47434 * 296.53168 * 20 18 9 40 40 H 1.09008 * 109.46592 * 176.53883 * 20 18 9 41 41 H 0.97006 * 120.00077 * 359.97438 * 21 20 18 42 42 H 1.07998 * 125.81961 * 180.20451 * 26 25 24 43 43 H 1.07999 * 126.42010 * 179.78116 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8916 2.3963 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0756 -1.2107 0.1767 9 7 1.3441 -2.3772 -0.2257 10 6 0.1202 -2.4178 -1.0330 11 6 0.1783 -3.5859 -1.9851 12 6 -0.7812 -3.6537 -2.9862 13 6 -0.7944 -4.7104 -3.8731 14 6 0.1558 -5.7089 -3.7638 15 6 1.1128 -5.6396 -2.7733 16 6 1.1309 -4.5743 -1.8809 17 6 2.2121 -4.5599 -0.8327 18 6 1.8275 -3.6506 0.3333 19 1 1.0385 -4.1191 0.9215 20 6 3.0504 -3.3968 1.2170 21 7 2.7051 -2.4311 2.2631 22 6 3.6346 -2.0494 3.1613 23 8 4.7585 -2.5103 3.1064 24 6 3.2888 -1.0730 4.2100 25 7 2.1157 -0.4990 4.3727 26 6 2.1730 0.3196 5.4207 27 6 3.4268 0.2695 5.9334 28 7 4.1330 -0.6040 5.1771 29 1 5.0633 -0.8501 5.2986 30 1 -0.4850 0.8401 0.0004 31 1 0.0290 -1.4915 -1.6004 32 1 -0.7432 -2.5274 -0.3766 33 1 -1.5231 -2.8735 -3.0711 34 1 -1.5438 -4.7575 -4.6494 35 1 0.1486 -6.5408 -4.4525 36 1 1.8543 -6.4203 -2.6900 37 1 3.1389 -4.1985 -1.2786 38 1 2.3652 -5.5733 -0.4617 39 1 3.8622 -2.9985 0.6083 40 1 3.3669 -4.3330 1.6769 41 1 1.8086 -2.0631 2.3067 42 1 1.3602 0.9237 5.7960 43 1 3.7936 0.8220 6.7858 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054041843.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:02:52 Heat of formation + Delta-G solvation = 76.708439 kcal Electronic energy + Delta-G solvation = -27781.075421 eV Core-core repulsion = 24020.745686 eV Total energy + Delta-G solvation = -3760.329736 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.96373 -39.43506 -38.69859 -36.52777 -33.87137 -32.92448 -32.39450 -31.38549 -30.45557 -29.53115 -28.74684 -25.72485 -25.50175 -23.05030 -22.69540 -21.52187 -21.35600 -20.99970 -19.96081 -19.11091 -18.42435 -16.52634 -16.22424 -15.86909 -15.51927 -15.32434 -15.01650 -14.54897 -14.30937 -14.15412 -13.81964 -13.74404 -13.59056 -13.43363 -13.04468 -12.83237 -12.57750 -12.43661 -12.13203 -11.68314 -11.52805 -11.10947 -10.86121 -10.80823 -10.69207 -10.46528 -10.16476 -10.06578 -9.99309 -9.95732 -9.88082 -9.60979 -8.74156 -8.55910 -8.24996 -8.19091 -7.82020 -6.75369 -5.85021 -3.28625 1.64382 1.88947 1.96920 2.85154 2.91137 3.36570 3.45549 3.46129 3.81035 3.96275 4.31225 4.44499 4.71454 5.11468 5.17045 5.26181 5.33866 5.40362 5.43178 5.49044 5.51345 5.60043 5.73038 5.89699 5.96789 6.02456 6.05902 6.12151 6.21067 6.30439 6.33396 6.57332 6.64640 6.73918 6.81505 6.96417 6.99042 7.01969 7.17018 7.23471 7.27544 7.53207 7.67349 7.78650 7.92266 8.27419 8.32806 8.69944 9.13799 9.73735 10.31394 11.24515 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.015102 B = 0.004161 C = 0.003560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1853.574852 B = 6727.548648 C = 7864.307486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.017 3.983 3 Si 0.896 3.104 4 H -0.280 1.280 5 H -0.290 1.290 6 H -0.287 1.287 7 C -0.250 4.250 8 H 0.070 0.930 9 N -0.587 5.587 10 C 0.207 3.793 11 C -0.076 4.076 12 C -0.124 4.124 13 C -0.130 4.130 14 C -0.141 4.141 15 C -0.128 4.128 16 C -0.068 4.068 17 C -0.090 4.090 18 C 0.157 3.843 19 H 0.044 0.956 20 C 0.136 3.864 21 N -0.662 5.662 22 C 0.597 3.403 23 O -0.569 6.569 24 C 0.156 3.844 25 N -0.428 5.428 26 C -0.028 4.028 27 C -0.038 4.038 28 N -0.531 5.531 29 H 0.426 0.574 30 H 0.255 0.745 31 H 0.097 0.903 32 H 0.043 0.957 33 H 0.117 0.883 34 H 0.112 0.888 35 H 0.110 0.890 36 H 0.111 0.889 37 H 0.074 0.926 38 H 0.063 0.937 39 H 0.071 0.929 40 H 0.062 0.938 41 H 0.429 0.571 42 H 0.175 0.825 43 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.615 -5.449 4.650 7.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.182 4.182 3 Si 0.726 3.274 4 H -0.206 1.206 5 H -0.217 1.217 6 H -0.214 1.214 7 C -0.379 4.379 8 H 0.087 0.913 9 N -0.311 5.311 10 C 0.082 3.918 11 C -0.078 4.078 12 C -0.142 4.142 13 C -0.149 4.149 14 C -0.159 4.159 15 C -0.146 4.146 16 C -0.068 4.068 17 C -0.129 4.129 18 C 0.050 3.950 19 H 0.061 0.939 20 C 0.012 3.988 21 N -0.312 5.312 22 C 0.380 3.620 23 O -0.449 6.449 24 C -0.106 4.106 25 N -0.150 5.150 26 C -0.182 4.182 27 C -0.177 4.177 28 N -0.133 5.133 29 H 0.265 0.735 30 H 0.065 0.935 31 H 0.115 0.885 32 H 0.061 0.939 33 H 0.135 0.865 34 H 0.130 0.870 35 H 0.128 0.872 36 H 0.129 0.871 37 H 0.092 0.908 38 H 0.082 0.918 39 H 0.089 0.911 40 H 0.080 0.920 41 H 0.269 0.731 42 H 0.192 0.808 43 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 2.576 -5.780 4.064 7.521 hybrid contribution 1.071 1.332 0.474 1.773 sum 3.647 -4.449 4.538 7.327 Atomic orbital electron populations 1.69948 1.05018 1.25548 1.53756 1.24962 0.95264 0.97945 1.00078 0.86308 0.79351 0.84451 0.77263 1.20552 1.21668 1.21415 1.19055 0.91167 0.83181 1.44504 0.91264 1.44007 1.28560 1.02130 1.56369 1.19792 0.88628 0.93101 0.90253 1.21037 0.93080 0.97277 0.96360 1.21122 0.99145 0.98350 0.95588 1.20950 0.99181 0.95186 0.99548 1.20840 0.96669 0.99178 0.99233 1.21117 0.99004 0.98352 0.96098 1.19467 0.96587 0.93955 0.96797 1.20874 0.96991 0.99416 0.95647 1.20715 0.93765 0.88948 0.91604 0.93872 1.21365 0.98076 0.90938 0.88442 1.45631 1.15651 1.42769 1.27110 1.16445 0.84887 0.80203 0.80503 1.90765 1.20976 1.57872 1.75278 1.22896 0.87225 1.04050 0.96404 1.70376 1.20061 1.08452 1.16118 1.22518 0.96775 1.02889 0.95994 1.22871 0.94357 0.99509 1.00982 1.42961 1.13954 1.32847 1.23519 0.73486 0.93491 0.88498 0.93906 0.86464 0.87033 0.87175 0.87117 0.90772 0.91840 0.91053 0.91994 0.73145 0.80794 0.80071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.26 11.06 55.49 0.61 -23.65 16 2 C 0.02 0.45 5.08 -17.43 -0.09 0.36 16 3 Si 0.90 21.78 29.57 -169.99 -5.03 16.76 16 4 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 6 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 7 C -0.25 -6.25 7.08 -15.06 -0.11 -6.35 16 8 H 0.07 1.79 6.18 -52.49 -0.32 1.47 16 9 N -0.59 -13.27 2.86 -166.39 -0.48 -13.75 16 10 C 0.21 4.66 4.80 -5.04 -0.02 4.64 16 11 C -0.08 -1.49 5.82 -104.55 -0.61 -2.09 16 12 C -0.12 -2.16 9.62 -39.46 -0.38 -2.54 16 13 C -0.13 -2.00 10.05 -39.67 -0.40 -2.39 16 14 C -0.14 -2.08 10.04 -39.69 -0.40 -2.48 16 15 C -0.13 -2.00 9.59 -39.43 -0.38 -2.38 16 16 C -0.07 -1.22 5.76 -104.61 -0.60 -1.82 16 17 C -0.09 -1.51 5.21 -28.05 -0.15 -1.66 16 18 C 0.16 2.97 3.00 -67.64 -0.20 2.77 16 19 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 20 C 0.14 2.49 4.43 -4.05 -0.02 2.47 16 21 N -0.66 -13.11 4.07 -61.39 -0.25 -13.36 16 22 C 0.60 11.71 7.81 -12.53 -0.10 11.61 16 23 O -0.57 -11.73 17.09 5.28 0.09 -11.64 16 24 C 0.16 2.82 7.95 -154.52 -1.23 1.59 16 25 N -0.43 -8.07 10.89 -11.26 -0.12 -8.19 16 26 C -0.03 -0.42 11.85 -17.96 -0.21 -0.63 16 27 C -0.04 -0.45 12.00 -16.93 -0.20 -0.66 16 28 N -0.53 -7.28 6.14 -10.78 -0.07 -7.35 16 29 H 0.43 4.73 8.96 -40.82 -0.37 4.37 16 30 H 0.25 6.80 8.31 -40.82 -0.34 6.46 16 31 H 0.10 2.44 6.45 -51.93 -0.33 2.11 16 32 H 0.04 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.12 1.93 8.05 -52.48 -0.42 1.51 16 34 H 0.11 1.41 8.06 -52.49 -0.42 0.99 16 35 H 0.11 1.32 8.06 -52.49 -0.42 0.90 16 36 H 0.11 1.47 8.05 -52.49 -0.42 1.05 16 37 H 0.07 1.27 8.03 -51.93 -0.42 0.86 16 38 H 0.06 0.90 8.10 -51.93 -0.42 0.48 16 39 H 0.07 1.40 7.25 -51.93 -0.38 1.03 16 40 H 0.06 1.01 8.14 -51.92 -0.42 0.59 16 41 H 0.43 9.29 7.16 -40.82 -0.29 9.00 16 42 H 0.17 2.06 8.06 -52.49 -0.42 1.64 16 43 H 0.18 1.27 8.06 -52.49 -0.42 0.85 16 LS Contribution 356.33 15.07 5.37 5.37 Total: -1.00 -30.55 356.33 -10.43 -40.98 By element: Atomic # 1 Polarization: 19.86 SS G_CDS: -5.47 Total: 14.39 kcal Atomic # 6 Polarization: 5.53 SS G_CDS: -5.10 Total: 0.44 kcal Atomic # 7 Polarization: -66.00 SS G_CDS: -0.30 Total: -66.30 kcal Atomic # 8 Polarization: -11.73 SS G_CDS: 0.09 Total: -11.64 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.03 Total: 16.76 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -30.55 -10.43 -40.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054041843.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.693 kcal (2) G-P(sol) polarization free energy of solvation -30.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.985 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds