Wall clock time and date at job start Tue Mar 31 2020 15:02:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86797 * 120.00036 * 2 1 4 4 H 1.48497 * 109.47328 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47289 * 300.00401 * 3 2 1 6 6 H 1.48493 * 109.47202 * 60.00429 * 3 2 1 7 7 C 1.38813 * 120.00029 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00120 * 190.92104 * 7 2 1 9 9 N 1.36937 * 119.99825 * 10.91883 * 7 2 1 10 10 C 1.46679 * 121.34110 * 27.99285 * 9 7 2 11 11 C 1.50813 * 109.67588 * 135.59980 * 10 9 7 12 12 C 1.38835 * 117.80394 * 190.90302 * 11 10 9 13 13 C 1.37959 * 120.50582 * 181.14486 * 12 11 10 14 14 C 1.38266 * 119.71505 * 359.96448 * 13 12 11 15 15 C 1.37905 * 119.82688 * 359.76008 * 14 13 12 16 16 C 1.37666 * 122.34242 * 11.56733 * 11 10 9 17 17 C 1.50593 * 122.86441 * 358.55404 * 16 11 10 18 18 C 1.47230 * 121.33612 * 208.01849 * 9 7 2 19 19 H 1.08992 * 109.81746 * 124.56892 * 18 9 7 20 20 C 1.53003 * 109.76727 * 3.80167 * 18 9 7 21 21 N 1.46491 * 109.47300 * 56.54298 * 20 18 9 22 22 C 1.34777 * 120.00291 * 180.27348 * 21 20 18 23 23 O 1.21599 * 119.99677 * 359.72263 * 22 21 20 24 24 C 1.47407 * 120.00020 * 179.71721 * 22 21 20 25 25 N 1.31611 * 125.86766 * 359.70006 * 24 22 21 26 26 C 1.33103 * 109.09548 * 179.82943 * 25 24 22 27 27 C 1.35559 * 108.35123 * 0.42891 * 26 25 24 28 28 N 1.35407 * 107.15926 * 359.73846 * 27 26 25 29 29 H 0.96997 * 126.43543 * 179.97438 * 28 27 26 30 30 H 0.97003 * 119.99639 * 359.97438 * 1 2 3 31 31 H 1.09006 * 109.43764 * 15.53843 * 10 9 7 32 32 H 1.09003 * 109.40704 * 255.64525 * 10 9 7 33 33 H 1.08003 * 119.74575 * 1.11294 * 12 11 10 34 34 H 1.08000 * 120.14140 * 179.97438 * 13 12 11 35 35 H 1.08001 * 120.08488 * 179.75832 * 14 13 12 36 36 H 1.07999 * 119.70491 * 180.02562 * 15 14 13 37 37 H 1.09007 * 109.19939 * 259.77341 * 17 16 11 38 38 H 1.08998 * 109.20239 * 140.48831 * 17 16 11 39 39 H 1.08998 * 109.47434 * 296.53168 * 20 18 9 40 40 H 1.09008 * 109.46592 * 176.53883 * 20 18 9 41 41 H 0.97006 * 120.00077 * 359.97438 * 21 20 18 42 42 H 1.07998 * 125.81961 * 180.20451 * 26 25 24 43 43 H 1.07999 * 126.42010 * 179.78116 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8916 2.3963 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0756 -1.2107 0.1767 9 7 1.3441 -2.3772 -0.2257 10 6 0.1202 -2.4178 -1.0330 11 6 0.1783 -3.5859 -1.9851 12 6 -0.7812 -3.6537 -2.9862 13 6 -0.7944 -4.7104 -3.8731 14 6 0.1558 -5.7089 -3.7638 15 6 1.1128 -5.6396 -2.7733 16 6 1.1309 -4.5743 -1.8809 17 6 2.2121 -4.5599 -0.8327 18 6 1.8275 -3.6506 0.3333 19 1 1.0385 -4.1191 0.9215 20 6 3.0504 -3.3968 1.2170 21 7 2.7051 -2.4311 2.2631 22 6 3.6346 -2.0494 3.1613 23 8 4.7585 -2.5103 3.1064 24 6 3.2888 -1.0730 4.2100 25 7 2.1157 -0.4990 4.3727 26 6 2.1730 0.3196 5.4207 27 6 3.4268 0.2695 5.9334 28 7 4.1330 -0.6040 5.1771 29 1 5.0633 -0.8501 5.2986 30 1 -0.4850 0.8401 0.0004 31 1 0.0290 -1.4915 -1.6004 32 1 -0.7432 -2.5274 -0.3766 33 1 -1.5231 -2.8735 -3.0711 34 1 -1.5438 -4.7575 -4.6494 35 1 0.1486 -6.5408 -4.4525 36 1 1.8543 -6.4203 -2.6900 37 1 3.1389 -4.1985 -1.2786 38 1 2.3652 -5.5733 -0.4617 39 1 3.8622 -2.9985 0.6083 40 1 3.3669 -4.3330 1.6769 41 1 1.8086 -2.0631 2.3067 42 1 1.3602 0.9237 5.7960 43 1 3.7936 0.8220 6.7858 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054041843.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:02:51 Heat of formation + Delta-G solvation = 57.668347 kcal Electronic energy + Delta-G solvation = -27781.901062 eV Core-core repulsion = 24020.745686 eV Total energy + Delta-G solvation = -3761.155376 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.13830 -40.88379 -40.14563 -38.06810 -35.46520 -34.53795 -33.63119 -32.94240 -31.89134 -30.92926 -30.15608 -27.35289 -27.03046 -24.57200 -24.23089 -22.86862 -22.48630 -22.42319 -21.31425 -20.61908 -19.80644 -18.18196 -17.72373 -17.36186 -16.96759 -16.66985 -16.45996 -16.02035 -15.93664 -15.62420 -15.22441 -15.06474 -14.89052 -14.72034 -14.56764 -14.42304 -14.01499 -13.76974 -13.60788 -13.26134 -13.11648 -12.79999 -12.62190 -12.53502 -12.26106 -12.14946 -11.86740 -11.58643 -11.44830 -11.29186 -11.23276 -11.15132 -10.65081 -10.03222 -9.51153 -9.47519 -9.23576 -8.64021 -7.85726 -5.28262 0.39726 0.61458 0.65461 1.37452 1.41923 1.47131 1.64383 1.72846 2.44492 2.47610 2.69588 3.01158 3.34256 3.41563 3.55024 3.83967 4.10288 4.13422 4.24525 4.26852 4.36416 4.41618 4.42024 4.48270 4.51946 4.64510 4.74319 4.83103 4.92831 4.94208 5.00593 5.21953 5.25037 5.29646 5.41356 5.51687 5.54719 5.65141 5.70631 5.72860 5.77429 6.04773 6.22924 6.30391 6.37508 6.52122 6.92448 7.16638 7.17704 7.82838 8.38209 9.22174 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.015102 B = 0.004161 C = 0.003560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1853.574852 B = 6727.548648 C = 7864.307486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.027 4.027 3 Si 0.939 3.061 4 H -0.282 1.282 5 H -0.292 1.292 6 H -0.296 1.296 7 C -0.229 4.229 8 H 0.061 0.939 9 N -0.599 5.599 10 C 0.224 3.776 11 C -0.107 4.107 12 C -0.138 4.138 13 C -0.127 4.127 14 C -0.131 4.131 15 C -0.126 4.126 16 C -0.083 4.083 17 C -0.083 4.083 18 C 0.157 3.843 19 H 0.041 0.959 20 C 0.140 3.860 21 N -0.671 5.671 22 C 0.595 3.405 23 O -0.586 6.586 24 C 0.111 3.889 25 N -0.467 5.467 26 C -0.062 4.062 27 C 0.008 3.992 28 N -0.518 5.518 29 H 0.439 0.561 30 H 0.248 0.752 31 H 0.060 0.940 32 H 0.012 0.988 33 H 0.113 0.887 34 H 0.142 0.858 35 H 0.149 0.851 36 H 0.142 0.858 37 H 0.071 0.929 38 H 0.099 0.901 39 H 0.056 0.944 40 H 0.087 0.913 41 H 0.418 0.582 42 H 0.195 0.805 43 H 0.240 0.760 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.911 -7.193 4.825 9.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.224 4.224 3 Si 0.770 3.230 4 H -0.207 1.207 5 H -0.219 1.219 6 H -0.223 1.223 7 C -0.359 4.359 8 H 0.079 0.921 9 N -0.323 5.323 10 C 0.098 3.902 11 C -0.109 4.109 12 C -0.157 4.157 13 C -0.145 4.145 14 C -0.149 4.149 15 C -0.144 4.144 16 C -0.084 4.084 17 C -0.122 4.122 18 C 0.051 3.949 19 H 0.059 0.941 20 C 0.016 3.984 21 N -0.319 5.319 22 C 0.380 3.620 23 O -0.468 6.468 24 C -0.149 4.149 25 N -0.190 5.190 26 C -0.215 4.215 27 C -0.132 4.132 28 N -0.121 5.121 29 H 0.280 0.720 30 H 0.057 0.943 31 H 0.078 0.922 32 H 0.030 0.970 33 H 0.131 0.869 34 H 0.160 0.840 35 H 0.166 0.834 36 H 0.160 0.840 37 H 0.090 0.910 38 H 0.117 0.883 39 H 0.075 0.925 40 H 0.105 0.895 41 H 0.256 0.744 42 H 0.212 0.788 43 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges 3.912 -7.569 4.219 9.507 hybrid contribution 0.666 1.838 0.485 2.014 sum 4.577 -5.731 4.705 8.714 Atomic orbital electron populations 1.70071 1.05744 1.25176 1.55886 1.25394 0.95729 0.99777 1.01459 0.85628 0.78302 0.82502 0.76561 1.20749 1.21855 1.22289 1.19032 0.90713 0.84102 1.42095 0.92146 1.44148 1.28366 1.02839 1.56925 1.19325 0.87614 0.93234 0.89993 1.20764 0.95641 0.97205 0.97278 1.21221 0.98895 0.99527 0.96024 1.21299 0.99892 0.94142 0.99185 1.21328 0.95182 0.99518 0.98879 1.21437 0.99761 0.97916 0.95278 1.19656 0.96363 0.94428 0.97910 1.20812 0.96464 1.00531 0.94352 1.20869 0.93784 0.87605 0.92651 0.94091 1.21392 0.97142 0.91696 0.88146 1.45693 1.15217 1.43239 1.27722 1.16687 0.84458 0.80219 0.80669 1.90727 1.21334 1.58755 1.75968 1.22466 0.88314 1.05942 0.98206 1.70268 1.21132 1.09617 1.18008 1.23099 0.99128 1.03442 0.95851 1.23743 0.92694 0.96572 1.00169 1.43013 1.14339 1.32320 1.22431 0.71990 0.94264 0.92181 0.97039 0.86882 0.84016 0.83354 0.84013 0.91048 0.88303 0.92528 0.89453 0.74448 0.78763 0.74363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.82 11.06 21.65 0.24 -52.58 16 2 C -0.03 -1.48 5.08 84.86 0.43 -1.05 16 3 Si 0.94 46.54 29.57 68.60 2.03 48.57 16 4 H -0.28 -13.89 7.11 99.48 0.71 -13.18 16 5 H -0.29 -14.36 7.11 99.48 0.71 -13.65 16 6 H -0.30 -14.90 7.11 99.48 0.71 -14.19 16 7 C -0.23 -11.97 7.08 84.03 0.59 -11.38 16 8 H 0.06 3.25 6.18 -2.91 -0.02 3.23 16 9 N -0.60 -28.32 2.86 -680.33 -1.95 -30.27 16 10 C 0.22 10.72 4.80 85.63 0.41 11.13 16 11 C -0.11 -4.29 5.82 -19.82 -0.12 -4.41 16 12 C -0.14 -4.85 9.62 22.35 0.22 -4.63 16 13 C -0.13 -3.55 10.05 22.21 0.22 -3.33 16 14 C -0.13 -3.32 10.04 22.20 0.22 -3.09 16 15 C -0.13 -3.49 9.59 22.37 0.21 -3.28 16 16 C -0.08 -2.89 5.76 -19.85 -0.11 -3.00 16 17 C -0.08 -2.67 5.21 29.74 0.16 -2.51 16 18 C 0.16 6.04 3.00 44.78 0.13 6.17 16 19 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 20 C 0.14 5.19 4.43 86.38 0.38 5.57 16 21 N -0.67 -27.55 4.07 -466.40 -1.90 -29.46 16 22 C 0.59 23.91 7.81 86.66 0.68 24.59 16 23 O -0.59 -24.40 17.09 -4.03 -0.07 -24.46 16 24 C 0.11 4.01 7.95 136.28 1.08 5.10 16 25 N -0.47 -17.90 10.89 -189.53 -2.06 -19.96 16 26 C -0.06 -1.75 11.85 83.88 0.99 -0.76 16 27 C 0.01 0.17 12.00 83.52 1.00 1.17 16 28 N -0.52 -13.31 6.14 -188.02 -1.16 -14.47 16 29 H 0.44 8.86 8.96 -92.71 -0.83 8.03 16 30 H 0.25 14.02 8.31 -92.71 -0.77 13.25 16 31 H 0.06 3.27 6.45 -2.38 -0.02 3.25 16 32 H 0.01 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.11 3.91 8.05 -2.91 -0.02 3.88 16 34 H 0.14 3.06 8.06 -2.91 -0.02 3.04 16 35 H 0.15 2.67 8.06 -2.91 -0.02 2.64 16 36 H 0.14 3.04 8.05 -2.91 -0.02 3.02 16 37 H 0.07 2.36 8.03 -2.38 -0.02 2.34 16 38 H 0.10 2.49 8.10 -2.39 -0.02 2.48 16 39 H 0.06 2.26 7.25 -2.39 -0.02 2.25 16 40 H 0.09 2.78 8.14 -2.38 -0.02 2.76 16 41 H 0.42 19.13 7.16 -92.70 -0.66 18.46 16 42 H 0.20 4.34 8.06 -2.91 -0.02 4.32 16 43 H 0.24 1.93 8.06 -2.91 -0.02 1.91 16 Total: -1.00 -71.54 356.33 1.21 -70.33 By element: Atomic # 1 Polarization: 36.44 SS G_CDS: -0.43 Total: 36.01 kcal Atomic # 6 Polarization: 9.79 SS G_CDS: 6.51 Total: 16.30 kcal Atomic # 7 Polarization: -139.91 SS G_CDS: -6.83 Total: -146.74 kcal Atomic # 8 Polarization: -24.40 SS G_CDS: -0.07 Total: -24.46 kcal Atomic # 14 Polarization: 46.54 SS G_CDS: 2.03 Total: 48.57 kcal Total: -71.54 1.21 -70.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054041843.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.995 kcal (2) G-P(sol) polarization free energy of solvation -71.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.326 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds