Wall clock time and date at job start Tue Mar 31 2020 15:02:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 120.00041 * 2 1 4 4 H 1.48503 * 109.47036 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47183 * 299.99848 * 3 2 1 6 6 H 1.48500 * 109.47311 * 59.99945 * 3 2 1 7 7 C 1.38807 * 119.99848 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00117 * 169.10442 * 7 2 1 9 9 N 1.36939 * 120.00009 * 349.11669 * 7 2 1 10 10 C 1.46676 * 121.31840 * 331.81808 * 9 7 2 11 11 C 1.50814 * 109.69325 * 224.41828 * 10 9 7 12 12 C 1.38829 * 117.81479 * 168.71811 * 11 10 9 13 13 C 1.37962 * 120.50060 * 178.82505 * 12 11 10 14 14 C 1.38265 * 119.71861 * 359.97438 * 13 12 11 15 15 C 1.37911 * 119.82959 * 0.26763 * 14 13 12 16 16 C 1.37674 * 122.32996 * 348.04604 * 11 10 9 17 17 C 1.50596 * 122.84245 * 2.12128 * 16 11 10 18 18 C 1.47225 * 121.32028 * 151.80217 * 9 7 2 19 19 H 1.09003 * 109.76684 * 235.51590 * 18 9 7 20 20 C 1.52999 * 109.76853 * 356.24653 * 18 9 7 21 21 N 1.46501 * 109.47660 * 305.00236 * 20 18 9 22 22 C 1.34773 * 120.00486 * 179.97438 * 21 20 18 23 23 O 1.21609 * 119.99836 * 0.02562 * 22 21 20 24 24 C 1.47403 * 120.00095 * 179.97438 * 22 21 20 25 25 N 1.31614 * 125.86699 * 359.70164 * 24 22 21 26 26 C 1.33097 * 109.09853 * 179.83229 * 25 24 22 27 27 C 1.35571 * 108.34916 * 0.42436 * 26 25 24 28 28 N 1.35407 * 107.15721 * 359.74666 * 27 26 25 29 29 H 0.96999 * 126.43286 * 179.97438 * 28 27 26 30 30 H 0.97008 * 119.99824 * 0.02562 * 1 2 3 31 31 H 1.09001 * 109.43286 * 104.34896 * 10 9 7 32 32 H 1.09005 * 109.39619 * 344.46000 * 10 9 7 33 33 H 1.08003 * 119.74986 * 358.79615 * 12 11 10 34 34 H 1.08002 * 120.14183 * 179.97438 * 13 12 11 35 35 H 1.07995 * 120.08762 * 180.28040 * 14 13 12 36 36 H 1.07994 * 119.71373 * 180.02562 * 15 14 13 37 37 H 1.09007 * 109.20453 * 99.71702 * 17 16 11 38 38 H 1.09007 * 109.19962 * 219.00898 * 17 16 11 39 39 H 1.09000 * 109.47223 * 65.00792 * 20 18 9 40 40 H 1.08997 * 109.47012 * 184.99837 * 20 18 9 41 41 H 0.96997 * 119.99306 * 0.02562 * 21 20 18 42 42 H 1.07997 * 125.82543 * 180.20677 * 26 25 24 43 43 H 1.07991 * 126.42099 * 179.77625 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0756 -1.2107 -0.1763 9 7 1.3439 -2.3773 0.2250 10 6 0.1219 -2.4181 1.0351 11 6 0.1810 -3.5876 1.9855 12 6 -0.7713 -3.6518 2.9936 13 6 -0.7836 -4.7099 3.8789 14 6 0.1597 -5.7138 3.7603 15 6 1.1093 -5.6485 2.7623 16 6 1.1279 -4.5806 1.8730 17 6 2.2100 -4.5624 0.8258 18 6 1.8257 -3.6496 -0.3376 19 1 1.0352 -4.1153 -0.9261 20 6 3.0476 -3.3946 -1.2223 21 7 2.7121 -2.3988 -2.2432 22 6 3.6411 -2.0145 -3.1408 23 8 4.7578 -2.4947 -3.1036 24 6 3.3034 -1.0129 -4.1682 25 7 2.1350 -0.4258 -4.3181 26 6 2.2011 0.4200 -5.3436 27 6 3.4505 0.3600 -5.8665 28 7 4.1480 -0.5388 -5.1323 29 1 5.0733 -0.7976 -5.2659 30 1 -0.4850 0.8401 -0.0004 31 1 -0.7434 -2.5258 0.3809 32 1 0.0336 -1.4925 1.6040 33 1 -1.5079 -2.8673 3.0858 34 1 -1.5268 -4.7538 4.6613 35 1 0.1529 -6.5471 4.4472 36 1 1.8450 -6.4338 2.6711 37 1 3.1362 -4.2020 1.2735 38 1 2.3638 -5.5747 0.4516 39 1 3.8691 -3.0240 -0.6093 40 1 3.3463 -4.3245 -1.7062 41 1 1.8216 -2.0155 -2.2725 42 1 1.3958 1.0448 -5.7006 43 1 3.8202 0.9237 -6.7102 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054041844.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:02:55 Heat of formation + Delta-G solvation = 77.310394 kcal Electronic energy + Delta-G solvation = -27803.504935 eV Core-core repulsion = 24043.201302 eV Total energy + Delta-G solvation = -3760.303633 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.95438 -39.43668 -38.69050 -36.53105 -33.85324 -32.93190 -32.38812 -31.38436 -30.45059 -29.52457 -28.74891 -25.72745 -25.49828 -23.04627 -22.69057 -21.52269 -21.34717 -21.00004 -19.94688 -19.10814 -18.42161 -16.52979 -16.22112 -15.85527 -15.52009 -15.30622 -15.02145 -14.54754 -14.30566 -14.15151 -13.81087 -13.73764 -13.58563 -13.42293 -13.04164 -12.83064 -12.57881 -12.43517 -12.14635 -11.67650 -11.53157 -11.10538 -10.85813 -10.80922 -10.69144 -10.46551 -10.16550 -10.06615 -9.97351 -9.95560 -9.87424 -9.61239 -8.74437 -8.54718 -8.24351 -8.18350 -7.82144 -6.75180 -5.85364 -3.29086 1.65260 1.88858 1.96795 2.85869 2.92292 3.36606 3.45654 3.46133 3.81985 3.97189 4.31115 4.44445 4.72547 5.12127 5.17048 5.26378 5.33836 5.40236 5.44182 5.48967 5.52148 5.59979 5.73095 5.89380 5.96780 6.02673 6.06012 6.12840 6.20882 6.30339 6.33659 6.57185 6.64510 6.74833 6.81732 6.96332 6.98908 7.02884 7.16807 7.23452 7.28404 7.53078 7.67158 7.78553 7.93503 8.28859 8.32883 8.71577 9.13563 9.73423 10.31109 11.24079 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.015281 B = 0.004170 C = 0.003565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1831.919658 B = 6712.899740 C = 7852.182815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.018 3.982 3 Si 0.896 3.104 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.290 1.290 7 C -0.251 4.251 8 H 0.070 0.930 9 N -0.587 5.587 10 C 0.207 3.793 11 C -0.076 4.076 12 C -0.123 4.123 13 C -0.130 4.130 14 C -0.141 4.141 15 C -0.128 4.128 16 C -0.068 4.068 17 C -0.090 4.090 18 C 0.157 3.843 19 H 0.044 0.956 20 C 0.136 3.864 21 N -0.661 5.661 22 C 0.596 3.404 23 O -0.570 6.570 24 C 0.156 3.844 25 N -0.428 5.428 26 C -0.028 4.028 27 C -0.039 4.039 28 N -0.531 5.531 29 H 0.426 0.574 30 H 0.255 0.745 31 H 0.044 0.956 32 H 0.097 0.903 33 H 0.117 0.883 34 H 0.112 0.888 35 H 0.110 0.890 36 H 0.111 0.889 37 H 0.074 0.926 38 H 0.063 0.937 39 H 0.071 0.929 40 H 0.062 0.938 41 H 0.430 0.570 42 H 0.175 0.825 43 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.626 -5.297 -4.531 7.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.182 4.182 3 Si 0.726 3.274 4 H -0.206 1.206 5 H -0.214 1.214 6 H -0.217 1.217 7 C -0.380 4.380 8 H 0.088 0.912 9 N -0.311 5.311 10 C 0.082 3.918 11 C -0.077 4.077 12 C -0.142 4.142 13 C -0.149 4.149 14 C -0.159 4.159 15 C -0.146 4.146 16 C -0.068 4.068 17 C -0.129 4.129 18 C 0.050 3.950 19 H 0.061 0.939 20 C 0.012 3.988 21 N -0.311 5.311 22 C 0.379 3.621 23 O -0.450 6.450 24 C -0.106 4.106 25 N -0.150 5.150 26 C -0.182 4.182 27 C -0.178 4.178 28 N -0.133 5.133 29 H 0.265 0.735 30 H 0.065 0.935 31 H 0.061 0.939 32 H 0.115 0.885 33 H 0.135 0.865 34 H 0.130 0.870 35 H 0.128 0.872 36 H 0.129 0.871 37 H 0.092 0.908 38 H 0.082 0.918 39 H 0.089 0.911 40 H 0.080 0.920 41 H 0.270 0.730 42 H 0.192 0.808 43 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 2.575 -5.649 -3.963 7.365 hybrid contribution 1.077 1.331 -0.467 1.774 sum 3.652 -4.318 -4.430 7.184 Atomic orbital electron populations 1.69949 1.05025 1.25572 1.53660 1.24963 0.95259 0.97947 1.00022 0.86310 0.79352 0.84454 0.77272 1.20559 1.21367 1.21674 1.19061 0.91185 0.83183 1.44572 0.91246 1.44006 1.28727 1.02187 1.56177 1.19789 0.88672 0.93065 0.90242 1.21038 0.93141 0.97253 0.96316 1.21121 0.99171 0.98352 0.95560 1.20951 0.99218 0.95143 0.99548 1.20841 0.96773 0.99139 0.99168 1.21117 0.99059 0.98361 0.96030 1.19472 0.96600 0.93922 0.96833 1.20876 0.96954 0.99417 0.95666 1.20717 0.93782 0.88940 0.91598 0.93874 1.21356 0.98119 0.90366 0.88975 1.45674 1.16293 1.41062 1.28084 1.16453 0.84845 0.80380 0.80443 1.90765 1.21510 1.57826 1.74893 1.22897 0.87261 1.03771 0.96631 1.70378 1.20077 1.08023 1.16485 1.22519 0.96820 1.02443 0.96388 1.22869 0.94658 0.98827 1.01401 1.42961 1.14385 1.31825 1.24121 0.73496 0.93474 0.93885 0.88537 0.86462 0.87033 0.87175 0.87114 0.90763 0.91844 0.91123 0.91989 0.72984 0.80806 0.80081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.20 11.07 55.49 0.61 -23.59 16 2 C 0.02 0.47 5.08 -17.43 -0.09 0.38 16 3 Si 0.90 21.77 29.57 -169.99 -5.03 16.74 16 4 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 6 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 7 C -0.25 -6.26 6.95 -15.06 -0.10 -6.37 16 8 H 0.07 1.79 6.19 -52.48 -0.32 1.47 16 9 N -0.59 -13.27 2.85 -166.39 -0.47 -13.74 16 10 C 0.21 4.66 4.80 -5.04 -0.02 4.64 16 11 C -0.08 -1.48 5.82 -104.55 -0.61 -2.09 16 12 C -0.12 -2.16 9.62 -39.46 -0.38 -2.54 16 13 C -0.13 -1.99 10.05 -39.67 -0.40 -2.39 16 14 C -0.14 -2.08 10.04 -39.69 -0.40 -2.48 16 15 C -0.13 -2.00 9.59 -39.43 -0.38 -2.37 16 16 C -0.07 -1.22 5.76 -104.60 -0.60 -1.82 16 17 C -0.09 -1.51 5.21 -28.04 -0.15 -1.66 16 18 C 0.16 2.97 3.02 -67.65 -0.20 2.77 16 19 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 20 C 0.14 2.49 4.45 -4.04 -0.02 2.48 16 21 N -0.66 -13.16 4.01 -61.39 -0.25 -13.41 16 22 C 0.60 11.74 7.81 -12.53 -0.10 11.64 16 23 O -0.57 -11.78 17.09 5.27 0.09 -11.69 16 24 C 0.16 2.83 7.95 -154.52 -1.23 1.60 16 25 N -0.43 -8.11 10.89 -11.26 -0.12 -8.23 16 26 C -0.03 -0.42 11.85 -17.96 -0.21 -0.63 16 27 C -0.04 -0.46 12.01 -16.93 -0.20 -0.66 16 28 N -0.53 -7.32 6.14 -10.78 -0.07 -7.39 16 29 H 0.43 4.76 8.96 -40.82 -0.37 4.39 16 30 H 0.26 6.79 8.31 -40.82 -0.34 6.45 16 31 H 0.04 1.04 8.14 -51.93 -0.42 0.61 16 32 H 0.10 2.43 6.46 -51.93 -0.34 2.09 16 33 H 0.12 1.93 8.05 -52.48 -0.42 1.51 16 34 H 0.11 1.41 8.06 -52.49 -0.42 0.98 16 35 H 0.11 1.32 8.06 -52.49 -0.42 0.90 16 36 H 0.11 1.47 8.05 -52.49 -0.42 1.05 16 37 H 0.07 1.27 8.02 -51.93 -0.42 0.86 16 38 H 0.06 0.90 8.10 -51.92 -0.42 0.48 16 39 H 0.07 1.38 7.32 -51.93 -0.38 1.00 16 40 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.43 9.38 7.02 -40.82 -0.29 9.09 16 42 H 0.17 2.09 8.06 -52.49 -0.42 1.66 16 43 H 0.18 1.28 8.06 -52.49 -0.42 0.86 16 LS Contribution 356.11 15.07 5.37 5.37 Total: -1.00 -30.49 356.11 -10.43 -40.92 By element: Atomic # 1 Polarization: 20.00 SS G_CDS: -5.47 Total: 14.53 kcal Atomic # 6 Polarization: 5.58 SS G_CDS: -5.09 Total: 0.49 kcal Atomic # 7 Polarization: -66.06 SS G_CDS: -0.30 Total: -66.36 kcal Atomic # 8 Polarization: -11.78 SS G_CDS: 0.09 Total: -11.69 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.03 Total: 16.74 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -30.49 -10.43 -40.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054041844.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.231 kcal (2) G-P(sol) polarization free energy of solvation -30.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.921 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds