Wall clock time and date at job start Tue Mar 31 2020 15:02:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 120.00041 * 2 1 4 4 H 1.48503 * 109.47036 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47183 * 299.99848 * 3 2 1 6 6 H 1.48500 * 109.47311 * 59.99945 * 3 2 1 7 7 C 1.38807 * 119.99848 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00117 * 169.10442 * 7 2 1 9 9 N 1.36939 * 120.00009 * 349.11669 * 7 2 1 10 10 C 1.46676 * 121.31840 * 331.81808 * 9 7 2 11 11 C 1.50814 * 109.69325 * 224.41828 * 10 9 7 12 12 C 1.38829 * 117.81479 * 168.71811 * 11 10 9 13 13 C 1.37962 * 120.50060 * 178.82505 * 12 11 10 14 14 C 1.38265 * 119.71861 * 359.97438 * 13 12 11 15 15 C 1.37911 * 119.82959 * 0.26763 * 14 13 12 16 16 C 1.37674 * 122.32996 * 348.04604 * 11 10 9 17 17 C 1.50596 * 122.84245 * 2.12128 * 16 11 10 18 18 C 1.47225 * 121.32028 * 151.80217 * 9 7 2 19 19 H 1.09003 * 109.76684 * 235.51590 * 18 9 7 20 20 C 1.52999 * 109.76853 * 356.24653 * 18 9 7 21 21 N 1.46501 * 109.47660 * 305.00236 * 20 18 9 22 22 C 1.34773 * 120.00486 * 179.97438 * 21 20 18 23 23 O 1.21609 * 119.99836 * 0.02562 * 22 21 20 24 24 C 1.47403 * 120.00095 * 179.97438 * 22 21 20 25 25 N 1.31614 * 125.86699 * 359.70164 * 24 22 21 26 26 C 1.33097 * 109.09853 * 179.83229 * 25 24 22 27 27 C 1.35571 * 108.34916 * 0.42436 * 26 25 24 28 28 N 1.35407 * 107.15721 * 359.74666 * 27 26 25 29 29 H 0.96999 * 126.43286 * 179.97438 * 28 27 26 30 30 H 0.97008 * 119.99824 * 0.02562 * 1 2 3 31 31 H 1.09001 * 109.43286 * 104.34896 * 10 9 7 32 32 H 1.09005 * 109.39619 * 344.46000 * 10 9 7 33 33 H 1.08003 * 119.74986 * 358.79615 * 12 11 10 34 34 H 1.08002 * 120.14183 * 179.97438 * 13 12 11 35 35 H 1.07995 * 120.08762 * 180.28040 * 14 13 12 36 36 H 1.07994 * 119.71373 * 180.02562 * 15 14 13 37 37 H 1.09007 * 109.20453 * 99.71702 * 17 16 11 38 38 H 1.09007 * 109.19962 * 219.00898 * 17 16 11 39 39 H 1.09000 * 109.47223 * 65.00792 * 20 18 9 40 40 H 1.08997 * 109.47012 * 184.99837 * 20 18 9 41 41 H 0.96997 * 119.99306 * 0.02562 * 21 20 18 42 42 H 1.07997 * 125.82543 * 180.20677 * 26 25 24 43 43 H 1.07991 * 126.42099 * 179.77625 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0756 -1.2107 -0.1763 9 7 1.3439 -2.3773 0.2250 10 6 0.1219 -2.4181 1.0351 11 6 0.1810 -3.5876 1.9855 12 6 -0.7713 -3.6518 2.9936 13 6 -0.7836 -4.7099 3.8789 14 6 0.1597 -5.7138 3.7603 15 6 1.1093 -5.6485 2.7623 16 6 1.1279 -4.5806 1.8730 17 6 2.2100 -4.5624 0.8258 18 6 1.8257 -3.6496 -0.3376 19 1 1.0352 -4.1153 -0.9261 20 6 3.0476 -3.3946 -1.2223 21 7 2.7121 -2.3988 -2.2432 22 6 3.6411 -2.0145 -3.1408 23 8 4.7578 -2.4947 -3.1036 24 6 3.3034 -1.0129 -4.1682 25 7 2.1350 -0.4258 -4.3181 26 6 2.2011 0.4200 -5.3436 27 6 3.4505 0.3600 -5.8665 28 7 4.1480 -0.5388 -5.1323 29 1 5.0733 -0.7976 -5.2659 30 1 -0.4850 0.8401 -0.0004 31 1 -0.7434 -2.5258 0.3809 32 1 0.0336 -1.4925 1.6040 33 1 -1.5079 -2.8673 3.0858 34 1 -1.5268 -4.7538 4.6613 35 1 0.1529 -6.5471 4.4472 36 1 1.8450 -6.4338 2.6711 37 1 3.1362 -4.2020 1.2735 38 1 2.3638 -5.5747 0.4516 39 1 3.8691 -3.0240 -0.6093 40 1 3.3463 -4.3245 -1.7062 41 1 1.8216 -2.0155 -2.2725 42 1 1.3958 1.0448 -5.7006 43 1 3.8202 0.9237 -6.7102 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054041844.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:02:54 Heat of formation + Delta-G solvation = 58.365747 kcal Electronic energy + Delta-G solvation = -27804.326437 eV Core-core repulsion = 24043.201302 eV Total energy + Delta-G solvation = -3761.125135 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.13596 -40.88644 -40.14090 -38.07214 -35.44824 -34.54662 -33.63002 -32.94052 -31.88645 -30.92752 -30.15816 -27.35588 -27.02547 -24.57175 -24.22651 -22.86904 -22.48480 -22.42265 -21.30338 -20.62131 -19.80695 -18.18458 -17.72003 -17.35386 -16.96858 -16.65732 -16.46136 -16.01701 -15.94425 -15.61496 -15.22070 -15.06178 -14.88845 -14.71910 -14.56929 -14.41956 -14.01504 -13.76839 -13.62104 -13.26352 -13.10794 -12.79637 -12.61725 -12.53527 -12.26149 -12.14855 -11.86747 -11.58590 -11.44572 -11.29941 -11.22308 -11.14597 -10.64985 -10.02180 -9.51225 -9.47186 -9.23596 -8.63554 -7.85723 -5.28381 0.40009 0.61440 0.65407 1.37611 1.42181 1.47251 1.64700 1.73159 2.44611 2.47732 2.70076 3.01119 3.34271 3.42087 3.55522 3.84092 4.10500 4.13536 4.24426 4.26823 4.36439 4.41605 4.41847 4.48330 4.52018 4.64634 4.74280 4.83176 4.92842 4.94173 5.00707 5.21941 5.24905 5.29704 5.41966 5.51799 5.54633 5.65246 5.70827 5.72848 5.77439 6.04728 6.23202 6.30365 6.37660 6.53083 6.93064 7.16788 7.18329 7.82819 8.38192 9.22111 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.015281 B = 0.004170 C = 0.003565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1831.919658 B = 6712.899740 C = 7852.182815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.026 4.026 3 Si 0.939 3.061 4 H -0.283 1.283 5 H -0.295 1.295 6 H -0.292 1.292 7 C -0.230 4.230 8 H 0.061 0.939 9 N -0.599 5.599 10 C 0.224 3.776 11 C -0.107 4.107 12 C -0.138 4.138 13 C -0.127 4.127 14 C -0.131 4.131 15 C -0.126 4.126 16 C -0.083 4.083 17 C -0.082 4.082 18 C 0.157 3.843 19 H 0.041 0.959 20 C 0.140 3.860 21 N -0.670 5.670 22 C 0.594 3.406 23 O -0.586 6.586 24 C 0.111 3.889 25 N -0.467 5.467 26 C -0.063 4.063 27 C 0.008 3.992 28 N -0.518 5.518 29 H 0.439 0.561 30 H 0.248 0.752 31 H 0.012 0.988 32 H 0.060 0.940 33 H 0.113 0.887 34 H 0.142 0.858 35 H 0.149 0.851 36 H 0.142 0.858 37 H 0.071 0.929 38 H 0.099 0.901 39 H 0.057 0.943 40 H 0.087 0.913 41 H 0.419 0.581 42 H 0.195 0.805 43 H 0.240 0.760 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.935 -7.025 -4.696 9.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.222 4.222 3 Si 0.770 3.230 4 H -0.208 1.208 5 H -0.222 1.222 6 H -0.219 1.219 7 C -0.360 4.360 8 H 0.079 0.921 9 N -0.323 5.323 10 C 0.098 3.902 11 C -0.109 4.109 12 C -0.157 4.157 13 C -0.145 4.145 14 C -0.149 4.149 15 C -0.144 4.144 16 C -0.084 4.084 17 C -0.121 4.121 18 C 0.051 3.949 19 H 0.059 0.941 20 C 0.016 3.984 21 N -0.319 5.319 22 C 0.379 3.621 23 O -0.469 6.469 24 C -0.149 4.149 25 N -0.190 5.190 26 C -0.216 4.216 27 C -0.132 4.132 28 N -0.121 5.121 29 H 0.280 0.720 30 H 0.058 0.942 31 H 0.030 0.970 32 H 0.078 0.922 33 H 0.131 0.869 34 H 0.160 0.840 35 H 0.166 0.834 36 H 0.160 0.840 37 H 0.090 0.910 38 H 0.117 0.883 39 H 0.075 0.925 40 H 0.105 0.895 41 H 0.257 0.743 42 H 0.212 0.788 43 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges 3.924 -7.422 -4.109 9.347 hybrid contribution 0.669 1.834 -0.482 2.010 sum 4.592 -5.588 -4.591 8.567 Atomic orbital electron populations 1.70070 1.05745 1.25195 1.55804 1.25387 0.95713 0.99751 1.01395 0.85634 0.78287 0.82538 0.76565 1.20791 1.22237 1.21874 1.19033 0.90720 0.84092 1.42165 0.92136 1.44147 1.28536 1.02892 1.56733 1.19322 0.87650 0.93207 0.89979 1.20766 0.95712 0.97171 0.97231 1.21220 0.98941 0.99526 0.95977 1.21299 0.99895 0.94110 0.99213 1.21328 0.95269 0.99492 0.98821 1.21437 0.99786 0.97937 0.95225 1.19660 0.96383 0.94393 0.97938 1.20813 0.96427 1.00519 0.94381 1.20871 0.93797 0.87618 0.92634 0.94112 1.21390 0.97199 0.91093 0.88713 1.45734 1.15859 1.41540 1.28717 1.16692 0.84409 0.80437 0.80574 1.90728 1.21855 1.58691 1.75578 1.22469 0.88373 1.05564 0.98509 1.70269 1.21164 1.09231 1.18323 1.23097 0.99171 1.02951 0.96339 1.23741 0.92952 0.96008 1.00481 1.43011 1.14745 1.31348 1.22997 0.71987 0.94245 0.97017 0.92205 0.86877 0.84018 0.83360 0.84013 0.91049 0.88309 0.92502 0.89477 0.74316 0.78808 0.74363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.70 11.07 21.65 0.24 -52.46 16 2 C -0.03 -1.41 5.08 84.86 0.43 -0.98 16 3 Si 0.94 46.51 29.57 68.60 2.03 48.54 16 4 H -0.28 -13.91 7.11 99.48 0.71 -13.21 16 5 H -0.30 -14.87 7.11 99.48 0.71 -14.16 16 6 H -0.29 -14.37 7.11 99.48 0.71 -13.66 16 7 C -0.23 -11.99 6.95 84.03 0.58 -11.41 16 8 H 0.06 3.25 6.19 -2.91 -0.02 3.23 16 9 N -0.60 -28.31 2.85 -680.35 -1.94 -30.25 16 10 C 0.22 10.72 4.80 85.64 0.41 11.13 16 11 C -0.11 -4.28 5.82 -19.82 -0.12 -4.40 16 12 C -0.14 -4.84 9.62 22.35 0.22 -4.63 16 13 C -0.13 -3.55 10.05 22.21 0.22 -3.33 16 14 C -0.13 -3.32 10.04 22.20 0.22 -3.09 16 15 C -0.13 -3.49 9.59 22.37 0.21 -3.28 16 16 C -0.08 -2.89 5.76 -19.85 -0.11 -3.01 16 17 C -0.08 -2.66 5.21 29.74 0.16 -2.51 16 18 C 0.16 6.04 3.02 44.78 0.14 6.17 16 19 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 20 C 0.14 5.19 4.45 86.38 0.38 5.57 16 21 N -0.67 -27.66 4.01 -466.40 -1.87 -29.52 16 22 C 0.59 23.96 7.81 86.66 0.68 24.64 16 23 O -0.59 -24.46 17.09 -4.06 -0.07 -24.53 16 24 C 0.11 4.04 7.95 136.28 1.08 5.12 16 25 N -0.47 -17.99 10.89 -189.53 -2.06 -20.05 16 26 C -0.06 -1.78 11.85 83.88 0.99 -0.79 16 27 C 0.01 0.17 12.01 83.52 1.00 1.17 16 28 N -0.52 -13.38 6.14 -188.02 -1.16 -14.54 16 29 H 0.44 8.90 8.96 -92.71 -0.83 8.07 16 30 H 0.25 14.00 8.31 -92.70 -0.77 13.23 16 31 H 0.01 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.06 3.25 6.46 -2.38 -0.02 3.23 16 33 H 0.11 3.91 8.05 -2.91 -0.02 3.88 16 34 H 0.14 3.06 8.06 -2.91 -0.02 3.04 16 35 H 0.15 2.67 8.06 -2.91 -0.02 2.64 16 36 H 0.14 3.04 8.05 -2.91 -0.02 3.02 16 37 H 0.07 2.36 8.02 -2.38 -0.02 2.34 16 38 H 0.10 2.49 8.10 -2.38 -0.02 2.47 16 39 H 0.06 2.26 7.32 -2.39 -0.02 2.25 16 40 H 0.09 2.78 8.14 -2.39 -0.02 2.76 16 41 H 0.42 19.30 7.02 -92.71 -0.65 18.65 16 42 H 0.19 4.39 8.06 -2.91 -0.02 4.37 16 43 H 0.24 1.96 8.06 -2.92 -0.02 1.94 16 Total: -1.00 -71.40 356.11 1.25 -70.14 By element: Atomic # 1 Polarization: 36.70 SS G_CDS: -0.42 Total: 36.28 kcal Atomic # 6 Polarization: 9.90 SS G_CDS: 6.50 Total: 16.40 kcal Atomic # 7 Polarization: -140.04 SS G_CDS: -6.79 Total: -146.83 kcal Atomic # 8 Polarization: -24.46 SS G_CDS: -0.07 Total: -24.53 kcal Atomic # 14 Polarization: 46.51 SS G_CDS: 2.03 Total: 48.54 kcal Total: -71.40 1.25 -70.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054041844.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.510 kcal (2) G-P(sol) polarization free energy of solvation -71.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.144 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds