Wall clock time and date at job start Tue Mar 31 2020 15:01:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31632 * 1 3 3 Si 1.86801 * 120.00633 * 2 1 4 4 H 1.48494 * 109.47101 * 240.00122 * 3 2 1 5 5 H 1.48504 * 109.46781 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47070 * 119.99629 * 3 2 1 7 7 C 1.38806 * 119.99701 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00118 * 179.97438 * 7 2 1 9 9 S 1.76204 * 119.99862 * 0.02562 * 7 2 1 10 10 C 1.81002 * 99.99673 * 179.97438 * 9 7 2 11 11 C 1.50699 * 109.46852 * 180.02562 * 10 9 7 12 12 O 1.21281 * 120.00186 * 359.97438 * 11 10 9 13 13 N 1.34779 * 120.00114 * 179.97438 * 11 10 9 14 14 C 1.46499 * 120.00281 * 184.70407 * 13 11 10 15 15 C 1.52990 * 112.91115 * 285.03529 * 14 13 11 16 16 N 1.46497 * 109.47267 * 311.26645 * 15 14 13 17 17 C 1.34783 * 120.00377 * 174.95987 * 16 15 14 18 18 O 1.21276 * 119.99693 * 0.02562 * 17 16 15 19 19 C 1.50695 * 119.99851 * 179.97438 * 17 16 15 20 20 C 1.53778 * 113.61844 * 279.13628 * 19 17 16 21 21 C 1.53951 * 87.02373 * 220.05179 * 20 19 17 22 22 C 1.53780 * 87.11012 * 25.36127 * 21 20 19 23 23 C 1.53786 * 113.61075 * 56.28365 * 14 13 11 24 24 C 1.53781 * 87.08150 * 89.11385 * 23 14 13 25 25 C 1.53777 * 113.61368 * 153.77977 * 14 13 11 26 26 H 0.96996 * 119.99255 * 0.02562 * 1 2 3 27 27 H 1.08992 * 109.47270 * 59.99859 * 10 9 7 28 28 H 1.08999 * 109.46968 * 299.99810 * 10 9 7 29 29 H 0.96999 * 119.99750 * 4.71550 * 13 11 10 30 30 H 1.09000 * 109.47260 * 71.26684 * 15 14 13 31 31 H 1.09004 * 109.47477 * 191.27059 * 15 14 13 32 32 H 0.97002 * 119.99833 * 354.96019 * 16 15 14 33 33 H 1.09004 * 112.85091 * 50.33672 * 19 17 16 34 34 H 1.09003 * 113.61609 * 334.57487 * 20 19 17 35 35 H 1.09001 * 113.61647 * 105.47035 * 20 19 17 36 36 H 1.09005 * 113.53656 * 270.81280 * 21 20 19 37 37 H 1.08994 * 113.66739 * 139.93278 * 21 20 19 38 38 H 1.08998 * 113.61485 * 220.09033 * 22 21 20 39 39 H 1.09004 * 113.68662 * 89.19936 * 22 21 20 40 40 H 1.08997 * 113.61332 * 334.57039 * 23 14 13 41 41 H 1.08991 * 113.69164 * 203.67314 * 23 14 13 42 42 H 1.09000 * 113.61819 * 139.97802 * 24 23 14 43 43 H 1.09002 * 113.61931 * 270.88516 * 24 23 14 44 44 H 1.08993 * 113.61936 * 156.34126 * 25 14 13 45 45 H 1.09000 * 113.61397 * 25.43156 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2505 1.6176 0.0000 4 1 3.1042 1.6962 -1.2125 5 1 1.2855 2.7464 -0.0006 6 1 3.1042 1.6962 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2022 0.0001 9 16 1.1291 -2.7280 0.0005 10 6 2.5157 -3.8915 0.0005 11 6 1.9871 -5.3028 -0.0001 12 8 0.7908 -5.5023 0.0000 13 7 2.8438 -6.3433 -0.0007 14 6 2.3333 -7.7124 -0.1054 15 6 1.6979 -8.2121 1.1935 16 7 2.6004 -7.9399 2.3149 17 6 2.2058 -8.2024 3.5767 18 8 1.1038 -8.6643 3.7836 19 6 3.1345 -7.9229 4.7301 20 6 4.1877 -9.0210 4.9531 21 6 3.9529 -8.8277 6.4623 22 6 2.5509 -8.3110 6.0989 23 6 1.4612 -7.9512 -1.3494 24 6 2.7572 -8.3210 -2.0901 25 6 3.3401 -8.7001 -0.7184 26 1 -0.4849 0.8401 -0.0004 27 1 3.1243 -3.7315 0.8904 28 1 3.1243 -3.7315 -0.8895 29 1 3.7984 -6.1855 0.0683 30 1 0.7509 -7.6975 1.3562 31 1 1.5207 -9.2853 1.1221 32 1 3.4821 -7.5708 2.1494 33 1 3.5522 -6.9164 4.7030 34 1 3.8818 -10.0005 4.5855 35 1 5.1886 -8.7389 4.6263 36 1 4.5956 -8.0691 6.9092 37 1 3.9419 -9.7603 7.0263 38 1 2.2322 -7.4565 6.6958 39 1 1.7955 -9.0951 6.0451 40 1 0.9845 -7.0473 -1.7284 41 1 0.7661 -8.7840 -1.2436 42 1 2.6468 -9.1683 -2.7668 43 1 3.2530 -7.4687 -2.5547 44 1 3.1592 -9.7379 -0.4389 45 1 4.3800 -8.4006 -0.5881 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001062380510.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:01:50 Heat of formation + Delta-G solvation = -39.091564 kcal Electronic energy + Delta-G solvation = -25574.403675 eV Core-core repulsion = 21912.203674 eV Total energy + Delta-G solvation = -3662.200001 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.145 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.81280 -40.03057 -37.89934 -37.43734 -34.49318 -33.05126 -32.44895 -29.52834 -28.46402 -26.29854 -25.96077 -25.84143 -25.49418 -22.88511 -21.20302 -20.63987 -19.64313 -19.13487 -17.91527 -17.70769 -16.42305 -16.39050 -15.88577 -15.58046 -15.42357 -14.93526 -14.82581 -14.57461 -14.50938 -14.10625 -13.58130 -13.36251 -12.99471 -12.91949 -12.72117 -12.54395 -12.53689 -12.26443 -12.12466 -11.69211 -11.42551 -11.10627 -11.06974 -11.05909 -10.98796 -10.80414 -10.78967 -10.66145 -10.50936 -9.85108 -9.73599 -9.39726 -9.08521 -9.04680 -8.94927 -8.26527 -6.52376 -6.23611 -3.94531 2.59296 2.88266 3.02937 3.14453 3.21520 3.25810 3.28605 3.62651 4.17203 4.19123 4.25341 4.32842 4.39308 4.50643 4.55250 4.57894 4.68826 4.97241 5.07058 5.11482 5.24379 5.30823 5.38025 5.40751 5.45951 5.49985 5.52398 5.57358 5.63998 5.67849 5.73797 5.82005 5.84442 5.86981 5.94623 6.06338 6.09280 6.11107 6.15501 6.37093 6.68124 7.43847 7.56618 7.62197 8.20246 8.32489 8.56584 9.21467 10.83708 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.010752 B = 0.003243 C = 0.002695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2603.597362 B = 8631.976601 C =10386.333634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.918 3.082 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.538 4.538 8 H 0.072 0.928 9 S -0.057 6.057 10 C -0.154 4.154 11 C 0.535 3.465 12 O -0.505 6.505 13 N -0.720 5.720 14 C 0.143 3.857 15 C 0.121 3.879 16 N -0.720 5.720 17 C 0.521 3.479 18 O -0.540 6.540 19 C -0.140 4.140 20 C -0.123 4.123 21 C -0.142 4.142 22 C -0.118 4.118 23 C -0.134 4.134 24 C -0.139 4.139 25 C -0.136 4.136 26 H 0.269 0.731 27 H 0.087 0.913 28 H 0.089 0.911 29 H 0.398 0.602 30 H 0.083 0.917 31 H 0.071 0.929 32 H 0.397 0.603 33 H 0.113 0.887 34 H 0.083 0.917 35 H 0.074 0.926 36 H 0.083 0.917 37 H 0.071 0.929 38 H 0.072 0.928 39 H 0.094 0.906 40 H 0.087 0.913 41 H 0.090 0.910 42 H 0.070 0.930 43 H 0.082 0.918 44 H 0.094 0.906 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.051 -20.240 4.205 24.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.135 4.135 3 Si 0.745 3.255 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.686 4.686 8 H 0.090 0.910 9 S 0.170 5.830 10 C -0.304 4.304 11 C 0.322 3.678 12 O -0.378 6.378 13 N -0.376 5.376 14 C 0.055 3.945 15 C -0.004 4.004 16 N -0.371 5.371 17 C 0.307 3.693 18 O -0.417 6.417 19 C -0.161 4.161 20 C -0.161 4.161 21 C -0.179 4.179 22 C -0.156 4.156 23 C -0.173 4.173 24 C -0.176 4.176 25 C -0.174 4.174 26 H 0.079 0.921 27 H 0.106 0.894 28 H 0.107 0.893 29 H 0.233 0.767 30 H 0.101 0.899 31 H 0.089 0.911 32 H 0.231 0.769 33 H 0.131 0.869 34 H 0.102 0.898 35 H 0.093 0.907 36 H 0.101 0.899 37 H 0.089 0.911 38 H 0.091 0.909 39 H 0.112 0.888 40 H 0.106 0.894 41 H 0.108 0.892 42 H 0.089 0.911 43 H 0.101 0.899 44 H 0.112 0.888 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 10.046 -20.787 4.324 23.488 hybrid contribution 2.888 1.723 -0.140 3.366 sum 12.934 -19.063 4.184 23.414 Atomic orbital electron populations 1.70006 1.05955 1.27607 1.46642 1.24991 0.95021 0.99019 0.94503 0.86230 0.79252 0.81272 0.78784 1.19944 1.20787 1.19934 1.22823 0.94836 0.91713 1.59216 0.91028 1.85439 1.04665 0.96221 1.96709 1.23535 1.06687 0.95426 1.04772 1.20292 0.86597 0.86002 0.74946 1.90713 1.15235 1.85386 1.46441 1.45702 1.09905 1.04183 1.77769 1.21458 0.96474 0.82748 0.93816 1.21685 0.94463 1.00149 0.84091 1.45826 1.19199 1.66065 1.06016 1.20505 0.87583 0.77437 0.83736 1.90692 1.21701 1.44500 1.84812 1.22807 0.97611 1.01373 0.94291 1.22843 0.98034 0.98161 0.97036 1.22861 0.97458 1.01710 0.95913 1.22794 0.97007 1.02021 0.93775 1.23151 0.96620 1.03210 0.94291 1.22829 0.97247 1.01505 0.96020 1.23260 0.98460 0.99051 0.96629 0.92091 0.89429 0.89282 0.76739 0.89905 0.91107 0.76928 0.86888 0.89810 0.90740 0.89856 0.91050 0.90895 0.88766 0.89448 0.89166 0.91144 0.89943 0.88770 0.90931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.07 13.22 55.49 0.73 -25.34 16 2 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 3 Si 0.92 21.23 29.55 -169.99 -5.02 16.21 16 4 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 5 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 6 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 7 C -0.54 -15.14 9.50 30.94 0.29 -14.85 16 8 H 0.07 1.90 7.80 -52.48 -0.41 1.49 16 9 S -0.06 -1.52 20.57 -107.50 -2.21 -3.73 16 10 C -0.15 -2.95 6.16 36.01 0.22 -2.73 16 11 C 0.54 9.28 7.36 -10.98 -0.08 9.20 16 12 O -0.50 -10.83 13.87 5.56 0.08 -10.75 16 13 N -0.72 -8.41 4.52 -46.86 -0.21 -8.62 16 14 C 0.14 1.51 0.64 -131.01 -0.08 1.43 16 15 C 0.12 1.49 5.09 -4.05 -0.02 1.47 16 16 N -0.72 -7.90 5.38 -60.30 -0.32 -8.22 16 17 C 0.52 6.71 7.35 -10.98 -0.08 6.63 16 18 O -0.54 -9.25 15.90 5.56 0.09 -9.16 16 19 C -0.14 -1.32 4.14 -90.96 -0.38 -1.70 16 20 C -0.12 -0.88 7.64 -25.83 -0.20 -1.07 16 21 C -0.14 -1.00 8.09 -25.83 -0.21 -1.21 16 22 C -0.12 -1.13 7.40 -25.92 -0.19 -1.32 16 23 C -0.13 -1.53 6.88 -25.92 -0.18 -1.70 16 24 C -0.14 -1.19 7.99 -25.91 -0.21 -1.40 16 25 C -0.14 -1.00 7.39 -25.92 -0.19 -1.19 16 26 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 27 H 0.09 1.55 8.14 -51.92 -0.42 1.13 16 28 H 0.09 1.58 8.14 -51.92 -0.42 1.16 16 29 H 0.40 3.40 8.74 -40.82 -0.36 3.04 16 30 H 0.08 1.38 7.63 -51.93 -0.40 0.98 16 31 H 0.07 0.80 7.94 -51.93 -0.41 0.39 16 32 H 0.40 3.32 8.12 -40.82 -0.33 2.99 16 33 H 0.11 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.08 0.64 8.09 -51.93 -0.42 0.22 16 35 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 37 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 38 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.09 1.05 7.45 -51.93 -0.39 0.66 16 40 H 0.09 1.29 6.75 -51.93 -0.35 0.94 16 41 H 0.09 0.93 8.10 -51.93 -0.42 0.51 16 42 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 44 H 0.09 0.61 7.96 -51.93 -0.41 0.20 16 45 H 0.07 0.43 8.12 -51.93 -0.42 0.01 16 LS Contribution 383.79 15.07 5.78 5.78 Total: -1.00 -35.85 383.79 -9.75 -45.59 By element: Atomic # 1 Polarization: 11.94 SS G_CDS: -7.26 Total: 4.68 kcal Atomic # 6 Polarization: -5.04 SS G_CDS: -1.40 Total: -6.44 kcal Atomic # 7 Polarization: -42.38 SS G_CDS: 0.20 Total: -42.18 kcal Atomic # 8 Polarization: -20.08 SS G_CDS: 0.17 Total: -19.91 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Atomic # 16 Polarization: -1.52 SS G_CDS: -2.21 Total: -3.73 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -35.85 -9.75 -45.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001062380510.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.501 kcal (2) G-P(sol) polarization free energy of solvation -35.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds