Wall clock time and date at job start Tue Mar 31 2020 15:01:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31632 * 1 3 3 Si 1.86801 * 120.00633 * 2 1 4 4 H 1.48494 * 109.47101 * 240.00122 * 3 2 1 5 5 H 1.48504 * 109.46781 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47070 * 119.99629 * 3 2 1 7 7 C 1.38806 * 119.99701 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00118 * 179.97438 * 7 2 1 9 9 S 1.76204 * 119.99862 * 0.02562 * 7 2 1 10 10 C 1.81002 * 99.99673 * 179.97438 * 9 7 2 11 11 C 1.50699 * 109.46852 * 180.02562 * 10 9 7 12 12 O 1.21281 * 120.00186 * 359.97438 * 11 10 9 13 13 N 1.34779 * 120.00114 * 179.97438 * 11 10 9 14 14 C 1.46499 * 120.00281 * 184.70407 * 13 11 10 15 15 C 1.52990 * 112.91115 * 285.03529 * 14 13 11 16 16 N 1.46497 * 109.47267 * 311.26645 * 15 14 13 17 17 C 1.34783 * 120.00377 * 174.95987 * 16 15 14 18 18 O 1.21276 * 119.99693 * 0.02562 * 17 16 15 19 19 C 1.50695 * 119.99851 * 179.97438 * 17 16 15 20 20 C 1.53778 * 113.61844 * 279.13628 * 19 17 16 21 21 C 1.53951 * 87.02373 * 220.05179 * 20 19 17 22 22 C 1.53780 * 87.11012 * 25.36127 * 21 20 19 23 23 C 1.53786 * 113.61075 * 56.28365 * 14 13 11 24 24 C 1.53781 * 87.08150 * 89.11385 * 23 14 13 25 25 C 1.53777 * 113.61368 * 153.77977 * 14 13 11 26 26 H 0.96996 * 119.99255 * 0.02562 * 1 2 3 27 27 H 1.08992 * 109.47270 * 59.99859 * 10 9 7 28 28 H 1.08999 * 109.46968 * 299.99810 * 10 9 7 29 29 H 0.96999 * 119.99750 * 4.71550 * 13 11 10 30 30 H 1.09000 * 109.47260 * 71.26684 * 15 14 13 31 31 H 1.09004 * 109.47477 * 191.27059 * 15 14 13 32 32 H 0.97002 * 119.99833 * 354.96019 * 16 15 14 33 33 H 1.09004 * 112.85091 * 50.33672 * 19 17 16 34 34 H 1.09003 * 113.61609 * 334.57487 * 20 19 17 35 35 H 1.09001 * 113.61647 * 105.47035 * 20 19 17 36 36 H 1.09005 * 113.53656 * 270.81280 * 21 20 19 37 37 H 1.08994 * 113.66739 * 139.93278 * 21 20 19 38 38 H 1.08998 * 113.61485 * 220.09033 * 22 21 20 39 39 H 1.09004 * 113.68662 * 89.19936 * 22 21 20 40 40 H 1.08997 * 113.61332 * 334.57039 * 23 14 13 41 41 H 1.08991 * 113.69164 * 203.67314 * 23 14 13 42 42 H 1.09000 * 113.61819 * 139.97802 * 24 23 14 43 43 H 1.09002 * 113.61931 * 270.88516 * 24 23 14 44 44 H 1.08993 * 113.61936 * 156.34126 * 25 14 13 45 45 H 1.09000 * 113.61397 * 25.43156 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2505 1.6176 0.0000 4 1 3.1042 1.6962 -1.2125 5 1 1.2855 2.7464 -0.0006 6 1 3.1042 1.6962 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2022 0.0001 9 16 1.1291 -2.7280 0.0005 10 6 2.5157 -3.8915 0.0005 11 6 1.9871 -5.3028 -0.0001 12 8 0.7908 -5.5023 0.0000 13 7 2.8438 -6.3433 -0.0007 14 6 2.3333 -7.7124 -0.1054 15 6 1.6979 -8.2121 1.1935 16 7 2.6004 -7.9399 2.3149 17 6 2.2058 -8.2024 3.5767 18 8 1.1038 -8.6643 3.7836 19 6 3.1345 -7.9229 4.7301 20 6 4.1877 -9.0210 4.9531 21 6 3.9529 -8.8277 6.4623 22 6 2.5509 -8.3110 6.0989 23 6 1.4612 -7.9512 -1.3494 24 6 2.7572 -8.3210 -2.0901 25 6 3.3401 -8.7001 -0.7184 26 1 -0.4849 0.8401 -0.0004 27 1 3.1243 -3.7315 0.8904 28 1 3.1243 -3.7315 -0.8895 29 1 3.7984 -6.1855 0.0683 30 1 0.7509 -7.6975 1.3562 31 1 1.5207 -9.2853 1.1221 32 1 3.4821 -7.5708 2.1494 33 1 3.5522 -6.9164 4.7030 34 1 3.8818 -10.0005 4.5855 35 1 5.1886 -8.7389 4.6263 36 1 4.5956 -8.0691 6.9092 37 1 3.9419 -9.7603 7.0263 38 1 2.2322 -7.4565 6.6958 39 1 1.7955 -9.0951 6.0451 40 1 0.9845 -7.0473 -1.7284 41 1 0.7661 -8.7840 -1.2436 42 1 2.6468 -9.1683 -2.7668 43 1 3.2530 -7.4687 -2.5547 44 1 3.1592 -9.7379 -0.4389 45 1 4.3800 -8.4006 -0.5881 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001062380510.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:01:50 Heat of formation + Delta-G solvation = -64.975391 kcal Electronic energy + Delta-G solvation = -25575.526082 eV Core-core repulsion = 21912.203674 eV Total energy + Delta-G solvation = -3663.322408 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.145 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.83202 -40.98670 -39.10893 -38.29846 -35.52812 -34.59682 -34.29424 -30.85205 -29.58023 -27.68183 -27.05189 -26.72956 -26.50082 -23.80078 -22.25291 -21.70223 -20.45783 -20.11871 -19.82805 -18.63683 -17.81251 -17.39252 -16.88575 -16.82954 -16.61136 -16.45670 -16.07290 -15.77491 -15.63785 -15.30146 -14.85064 -14.66078 -14.39019 -13.93089 -13.77890 -13.55700 -13.39550 -13.25473 -13.17475 -13.00025 -12.87250 -12.68547 -12.58010 -12.16436 -11.91376 -11.87610 -11.73441 -11.44058 -11.37296 -11.29611 -11.13394 -10.77992 -10.75014 -10.27129 -10.11370 -10.07438 -8.67268 -8.35174 -6.13349 1.25592 1.43231 1.45910 1.54942 1.59852 1.63194 2.08910 2.26754 2.32172 2.99053 3.29433 3.38456 3.52714 3.60048 3.66291 3.71634 3.83120 3.88762 3.91581 4.01795 4.24419 4.30513 4.41175 4.45876 4.50917 4.69295 4.74895 4.79959 4.80505 4.86102 4.86977 5.03819 5.05766 5.09467 5.12257 5.13053 5.18632 5.25362 5.40534 5.40875 5.52746 5.66716 6.18625 6.51383 6.54204 7.05995 7.24659 7.28881 8.73740 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.010752 B = 0.003243 C = 0.002695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2603.597362 B = 8631.976601 C =10386.333634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.012 3.988 3 Si 0.998 3.002 4 H -0.261 1.261 5 H -0.281 1.281 6 H -0.261 1.261 7 C -0.546 4.546 8 H 0.084 0.916 9 S -0.155 6.155 10 C -0.128 4.128 11 C 0.537 3.463 12 O -0.554 6.554 13 N -0.692 5.692 14 C 0.138 3.862 15 C 0.127 3.873 16 N -0.707 5.707 17 C 0.512 3.488 18 O -0.593 6.593 19 C -0.140 4.140 20 C -0.110 4.110 21 C -0.130 4.130 22 C -0.133 4.133 23 C -0.149 4.149 24 C -0.129 4.129 25 C -0.110 4.110 26 H 0.270 0.730 27 H 0.109 0.891 28 H 0.110 0.890 29 H 0.420 0.580 30 H 0.030 0.970 31 H 0.082 0.918 32 H 0.413 0.587 33 H 0.129 0.871 34 H 0.078 0.922 35 H 0.102 0.898 36 H 0.100 0.900 37 H 0.078 0.922 38 H 0.068 0.932 39 H 0.070 0.930 40 H 0.045 0.955 41 H 0.095 0.905 42 H 0.088 0.912 43 H 0.079 0.921 44 H 0.113 0.887 45 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.819 -21.001 4.171 27.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.192 4.192 3 Si 0.820 3.180 4 H -0.185 1.185 5 H -0.206 1.206 6 H -0.185 1.185 7 C -0.694 4.694 8 H 0.102 0.898 9 S 0.072 5.928 10 C -0.279 4.279 11 C 0.323 3.677 12 O -0.431 6.431 13 N -0.347 5.347 14 C 0.050 3.950 15 C 0.001 3.999 16 N -0.358 5.358 17 C 0.300 3.700 18 O -0.473 6.473 19 C -0.161 4.161 20 C -0.148 4.148 21 C -0.167 4.167 22 C -0.171 4.171 23 C -0.187 4.187 24 C -0.167 4.167 25 C -0.147 4.147 26 H 0.079 0.921 27 H 0.127 0.873 28 H 0.128 0.872 29 H 0.258 0.742 30 H 0.048 0.952 31 H 0.100 0.900 32 H 0.250 0.750 33 H 0.147 0.853 34 H 0.096 0.904 35 H 0.120 0.880 36 H 0.118 0.882 37 H 0.097 0.903 38 H 0.087 0.913 39 H 0.089 0.911 40 H 0.064 0.936 41 H 0.113 0.887 42 H 0.106 0.894 43 H 0.098 0.902 44 H 0.131 0.869 45 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 14.913 -21.571 4.275 26.571 hybrid contribution 1.358 1.844 -0.135 2.295 sum 16.271 -19.727 4.141 25.905 Atomic orbital electron populations 1.70189 1.08068 1.28640 1.48034 1.26148 0.95931 1.03406 0.93753 0.85006 0.77796 0.75639 0.79582 1.18521 1.20601 1.18530 1.23179 0.95353 0.91976 1.58860 0.89771 1.85673 1.10697 0.99352 1.97048 1.23366 1.03446 0.94395 1.06737 1.20030 0.86319 0.86445 0.74877 1.90717 1.17487 1.85902 1.48965 1.45343 1.10311 1.03557 1.75493 1.21651 0.98159 0.82522 0.92632 1.21533 0.92836 1.00183 0.85337 1.45726 1.19528 1.65281 1.05249 1.21248 0.87373 0.76412 0.84925 1.90669 1.24096 1.46980 1.85604 1.22949 0.97742 1.03149 0.92301 1.22822 0.98325 0.96798 0.96812 1.22846 0.95307 1.02352 0.96202 1.22840 0.98310 1.01465 0.94446 1.23241 0.98163 1.01714 0.95618 1.22799 0.94886 1.02016 0.96972 1.23215 0.98789 0.98666 0.94044 0.92060 0.87256 0.87173 0.74187 0.95177 0.89967 0.75005 0.85286 0.90377 0.87969 0.88176 0.90332 0.91280 0.91149 0.93619 0.88655 0.89376 0.90230 0.86915 0.87938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.44 13.22 21.65 0.29 -56.16 16 2 C 0.01 0.70 5.49 84.86 0.47 1.16 16 3 Si 1.00 43.28 29.55 68.60 2.03 45.30 16 4 H -0.26 -10.65 7.11 99.48 0.71 -9.94 16 5 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 6 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 7 C -0.55 -30.89 9.50 67.96 0.65 -30.24 16 8 H 0.08 4.37 7.80 -2.91 -0.02 4.34 16 9 S -0.15 -8.55 20.57 -56.49 -1.16 -9.71 16 10 C -0.13 -4.84 6.16 71.24 0.44 -4.40 16 11 C 0.54 18.65 7.36 87.66 0.65 19.30 16 12 O -0.55 -25.07 13.87 -3.03 -0.04 -25.12 16 13 N -0.69 -14.86 4.52 -420.55 -1.90 -16.76 16 14 C 0.14 2.71 0.64 4.13 0.00 2.71 16 15 C 0.13 3.12 5.09 86.38 0.44 3.56 16 16 N -0.71 -14.67 5.38 -463.08 -2.49 -17.16 16 17 C 0.51 13.18 7.35 87.65 0.64 13.82 16 18 O -0.59 -21.38 15.90 -3.02 -0.05 -21.42 16 19 C -0.14 -2.46 4.14 -11.02 -0.05 -2.51 16 20 C -0.11 -1.24 7.64 31.18 0.24 -1.01 16 21 C -0.13 -1.51 8.09 31.18 0.25 -1.26 16 22 C -0.13 -2.50 7.40 31.12 0.23 -2.27 16 23 C -0.15 -3.37 6.88 31.12 0.21 -3.15 16 24 C -0.13 -1.86 7.99 31.12 0.25 -1.61 16 25 C -0.11 -1.14 7.39 31.12 0.23 -0.91 16 26 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 27 H 0.11 3.66 8.14 -2.40 -0.02 3.64 16 28 H 0.11 3.71 8.14 -2.40 -0.02 3.69 16 29 H 0.42 5.51 8.74 -92.71 -0.81 4.70 16 30 H 0.03 1.07 7.63 -2.39 -0.02 1.06 16 31 H 0.08 1.83 7.94 -2.39 -0.02 1.81 16 32 H 0.41 5.67 8.12 -92.71 -0.75 4.92 16 33 H 0.13 1.86 8.14 -2.38 -0.02 1.84 16 34 H 0.08 1.00 8.09 -2.39 -0.02 0.98 16 35 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 36 H 0.10 0.87 8.14 -2.38 -0.02 0.85 16 37 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 38 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 39 H 0.07 1.66 7.45 -2.38 -0.02 1.64 16 40 H 0.04 1.43 6.75 -2.39 -0.02 1.41 16 41 H 0.09 2.00 8.10 -2.39 -0.02 1.98 16 42 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 43 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 44 H 0.11 0.90 7.96 -2.39 -0.02 0.88 16 45 H 0.10 0.57 8.12 -2.39 -0.02 0.55 16 Total: -1.00 -85.71 383.79 0.76 -84.95 By element: Atomic # 1 Polarization: 23.44 SS G_CDS: -0.56 Total: 22.88 kcal Atomic # 6 Polarization: -11.46 SS G_CDS: 4.65 Total: -6.81 kcal Atomic # 7 Polarization: -85.97 SS G_CDS: -4.11 Total: -90.07 kcal Atomic # 8 Polarization: -46.45 SS G_CDS: -0.09 Total: -46.54 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.30 kcal Atomic # 16 Polarization: -8.55 SS G_CDS: -1.16 Total: -9.71 kcal Total: -85.71 0.76 -84.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001062380510.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.974 kcal (2) G-P(sol) polarization free energy of solvation -85.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds