Wall clock time and date at job start Tue Mar 31 2020 15:01:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86796 * 119.99984 * 2 1 4 4 H 1.48498 * 109.47062 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47241 * 300.00152 * 3 2 1 6 6 H 1.48502 * 109.47005 * 60.00381 * 3 2 1 7 7 C 1.38805 * 119.99952 * 180.02562 * 2 1 3 8 8 H 1.07992 * 119.99525 * 179.97438 * 7 2 1 9 9 S 1.76195 * 119.99868 * 359.97438 * 7 2 1 10 10 C 1.80996 * 99.99884 * 180.02562 * 9 7 2 11 11 C 1.50708 * 109.47252 * 179.97438 * 10 9 7 12 12 O 1.21281 * 119.99686 * 0.02562 * 11 10 9 13 13 N 1.34777 * 120.00141 * 179.97438 * 11 10 9 14 14 C 1.46493 * 120.00129 * 174.97223 * 13 11 10 15 15 C 1.53010 * 112.84911 * 294.02337 * 14 13 11 16 16 N 1.46504 * 109.47083 * 311.52266 * 15 14 13 17 17 C 1.34770 * 119.99770 * 174.96292 * 16 15 14 18 18 O 1.21277 * 120.00339 * 359.97438 * 17 16 15 19 19 C 1.50701 * 119.99779 * 180.02562 * 17 16 15 20 20 C 1.53007 * 109.47254 * 179.97438 * 19 17 16 21 21 C 1.52996 * 117.49558 * 243.74549 * 20 19 17 22 22 C 1.52996 * 117.49973 * 175.08079 * 20 19 17 23 23 C 1.53775 * 113.61642 * 162.71865 * 14 13 11 24 24 C 1.53782 * 87.08260 * 270.88377 * 23 14 13 25 25 C 1.53778 * 113.61810 * 65.22018 * 14 13 11 26 26 H 0.96998 * 120.00434 * 359.97438 * 1 2 3 27 27 H 1.09000 * 109.47582 * 299.99559 * 10 9 7 28 28 H 1.09000 * 109.47069 * 59.99999 * 10 9 7 29 29 H 0.97000 * 119.99644 * 354.97698 * 13 11 10 30 30 H 1.09002 * 109.46765 * 71.51831 * 15 14 13 31 31 H 1.08994 * 109.47258 * 191.52127 * 15 14 13 32 32 H 0.96999 * 119.99881 * 354.95553 * 16 15 14 33 33 H 1.08999 * 109.46670 * 299.98744 * 19 17 16 34 34 H 1.08997 * 109.47467 * 59.99252 * 19 17 16 35 35 H 1.09001 * 115.54453 * 29.41353 * 20 19 17 36 36 H 1.08996 * 117.50560 * 359.97438 * 21 20 19 37 37 H 1.08999 * 117.49606 * 145.02175 * 21 20 19 38 38 H 1.08995 * 117.49871 * 214.97359 * 22 20 19 39 39 H 1.09002 * 117.50013 * 0.02562 * 22 20 19 40 40 H 1.09000 * 113.61589 * 25.43393 * 23 14 13 41 41 H 1.09000 * 113.61764 * 156.33151 * 23 14 13 42 42 H 1.08996 * 113.61346 * 220.02295 * 24 23 14 43 43 H 1.08999 * 113.61492 * 89.11500 * 24 23 14 44 44 H 1.08995 * 113.61919 * 203.66926 * 25 14 13 45 45 H 1.09010 * 113.61004 * 334.56873 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3463 -0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8916 2.3964 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2020 -0.0010 9 16 1.1293 -2.7280 -0.0005 10 6 2.5158 -3.8914 -0.0005 11 6 1.9873 -5.3028 0.0001 12 8 0.7910 -5.5023 0.0000 13 7 2.8441 -6.3432 -0.0003 14 6 2.3342 -7.7120 0.1115 15 6 1.6787 -7.9931 1.4652 16 7 2.5620 -7.5342 2.5402 17 6 2.1474 -7.5864 3.8214 18 8 1.0429 -8.0127 4.0845 19 6 3.0557 -7.1138 4.9271 20 6 2.3485 -7.2788 6.2739 21 6 2.0454 -6.0097 7.0728 22 6 3.1512 -6.9611 7.5370 23 6 3.3491 -8.7844 -0.3182 24 6 2.7865 -8.6343 -1.7415 25 6 1.4802 -8.1513 -1.0895 26 1 -0.4851 0.8400 0.0004 27 1 3.1244 -3.7314 -0.8905 28 1 3.1244 -3.7313 0.8894 29 1 3.7983 -6.1856 -0.0746 30 1 0.7278 -7.4637 1.5253 31 1 1.5056 -9.0641 1.5696 32 1 3.4453 -7.1929 2.3297 33 1 3.9715 -7.7049 4.9226 34 1 3.3006 -6.0630 4.7721 35 1 1.6255 -8.0927 6.3284 36 1 2.3501 -5.0572 6.6393 37 1 1.1231 -5.9888 7.6534 38 1 2.9559 -7.5655 8.4227 39 1 4.1830 -6.6340 7.4086 40 1 4.3872 -8.4661 -0.2232 41 1 3.1634 -9.7633 0.1238 42 1 2.6853 -9.5805 -2.2730 43 1 3.2895 -7.8680 -2.3313 44 1 0.7835 -8.9571 -0.8585 45 1 1.0095 -7.3217 -1.6173 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001062387805.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:01:35 Heat of formation + Delta-G solvation = -35.329911 kcal Electronic energy + Delta-G solvation = -25455.542439 eV Core-core repulsion = 21793.505556 eV Total energy + Delta-G solvation = -3662.036883 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.145 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.73521 -39.51480 -37.85857 -37.14312 -34.46443 -33.05212 -32.45262 -30.31464 -29.16304 -27.35708 -25.97706 -25.50956 -23.04906 -22.50170 -21.37219 -20.73814 -20.11164 -19.18779 -17.89144 -17.51692 -16.41856 -16.37445 -15.84535 -15.66613 -15.30161 -14.95478 -14.83146 -14.62873 -14.29132 -14.11675 -13.68728 -13.60686 -13.32319 -13.00037 -12.62583 -12.54752 -12.34084 -12.18816 -11.71372 -11.63928 -11.59430 -11.12114 -11.09116 -11.04711 -10.98047 -10.78283 -10.53302 -10.49690 -10.17623 -9.83537 -9.80523 -9.41188 -9.10307 -9.02455 -8.95261 -8.25729 -6.52526 -6.24194 -3.94893 2.65814 2.87598 3.03168 3.12235 3.19444 3.25807 3.29715 3.61825 3.68819 4.16513 4.18447 4.39473 4.53374 4.53526 4.63603 4.69793 4.77455 4.96641 5.02134 5.11157 5.23921 5.29053 5.37291 5.40047 5.42396 5.47546 5.50013 5.54514 5.64225 5.65825 5.78985 5.81725 5.86182 5.93694 5.98010 6.05184 6.08246 6.09285 6.15745 6.38311 6.67387 7.45254 7.56909 7.62331 8.22871 8.32488 8.56515 9.21219 10.83216 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.008344 B = 0.003763 C = 0.002779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3355.068904 B = 7439.719861 C =10071.530044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.918 3.082 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.536 4.536 8 H 0.072 0.928 9 S -0.057 6.057 10 C -0.153 4.153 11 C 0.535 3.465 12 O -0.505 6.505 13 N -0.721 5.721 14 C 0.143 3.857 15 C 0.122 3.878 16 N -0.724 5.724 17 C 0.515 3.485 18 O -0.538 6.538 19 C -0.111 4.111 20 C -0.140 4.140 21 C -0.177 4.177 22 C -0.182 4.182 23 C -0.136 4.136 24 C -0.139 4.139 25 C -0.135 4.135 26 H 0.268 0.732 27 H 0.088 0.912 28 H 0.088 0.912 29 H 0.399 0.601 30 H 0.085 0.915 31 H 0.072 0.928 32 H 0.397 0.603 33 H 0.095 0.905 34 H 0.095 0.905 35 H 0.117 0.883 36 H 0.096 0.904 37 H 0.095 0.905 38 H 0.093 0.907 39 H 0.093 0.907 40 H 0.072 0.928 41 H 0.095 0.905 42 H 0.070 0.930 43 H 0.082 0.918 44 H 0.089 0.911 45 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.317 -18.697 5.085 22.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.135 4.135 3 Si 0.744 3.256 4 H -0.196 1.196 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.685 4.685 8 H 0.091 0.909 9 S 0.169 5.831 10 C -0.304 4.304 11 C 0.322 3.678 12 O -0.377 6.377 13 N -0.376 5.376 14 C 0.055 3.945 15 C -0.003 4.003 16 N -0.375 5.375 17 C 0.301 3.699 18 O -0.414 6.414 19 C -0.151 4.151 20 C -0.159 4.159 21 C -0.214 4.214 22 C -0.219 4.219 23 C -0.174 4.174 24 C -0.176 4.176 25 C -0.174 4.174 26 H 0.078 0.922 27 H 0.106 0.894 28 H 0.106 0.894 29 H 0.233 0.767 30 H 0.103 0.897 31 H 0.090 0.910 32 H 0.231 0.769 33 H 0.113 0.887 34 H 0.114 0.886 35 H 0.135 0.865 36 H 0.114 0.886 37 H 0.113 0.887 38 H 0.112 0.888 39 H 0.112 0.888 40 H 0.091 0.909 41 H 0.113 0.887 42 H 0.089 0.911 43 H 0.100 0.900 44 H 0.108 0.892 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 9.323 -19.222 5.285 22.008 hybrid contribution 2.883 1.669 -0.187 3.337 sum 12.206 -17.553 5.098 21.980 Atomic orbital electron populations 1.70023 1.05955 1.27391 1.46811 1.24990 0.95008 0.99026 0.94514 0.86128 0.79557 0.81929 0.77945 1.19636 1.20545 1.20541 1.22899 0.94896 0.91689 1.58990 0.90938 1.85456 1.04657 0.96252 1.96691 1.23535 1.06684 0.95447 1.04739 1.20294 0.86602 0.86000 0.74952 1.90713 1.15239 1.85378 1.46387 1.45727 1.09988 1.04200 1.77732 1.21462 0.96342 0.82645 0.94007 1.21653 0.94855 0.99591 0.84212 1.45814 1.19486 1.66158 1.06082 1.20556 0.87824 0.77983 0.83527 1.90695 1.21396 1.46059 1.83298 1.21221 0.98367 1.03277 0.92192 1.22026 1.02658 1.01083 0.90098 1.23068 1.00011 0.94499 1.03810 1.23004 0.96926 1.03984 0.97986 1.23266 0.98425 0.98520 0.97175 1.22828 0.97304 1.01598 0.95903 1.23175 0.96627 1.01777 0.95774 0.92200 0.89366 0.89399 0.76688 0.89705 0.91032 0.76900 0.88711 0.88625 0.86509 0.88556 0.88696 0.88809 0.88842 0.90905 0.88698 0.91143 0.89980 0.89222 0.89706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.02 13.22 55.49 0.73 -25.29 16 2 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 3 Si 0.92 21.20 29.55 -169.99 -5.02 16.18 16 4 H -0.27 -6.06 7.11 56.52 0.40 -5.65 16 5 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 6 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 7 C -0.54 -15.06 9.50 30.94 0.29 -14.77 16 8 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 9 S -0.06 -1.52 20.57 -107.50 -2.21 -3.73 16 10 C -0.15 -2.94 6.16 36.01 0.22 -2.71 16 11 C 0.54 9.21 7.40 -10.98 -0.08 9.13 16 12 O -0.50 -10.79 13.86 5.56 0.08 -10.71 16 13 N -0.72 -8.29 4.53 -46.86 -0.21 -8.50 16 14 C 0.14 1.49 0.63 -131.01 -0.08 1.41 16 15 C 0.12 1.50 4.93 -4.03 -0.02 1.49 16 16 N -0.72 -8.02 5.38 -60.29 -0.32 -8.35 16 17 C 0.51 6.71 7.83 -10.99 -0.09 6.63 16 18 O -0.54 -9.31 15.56 5.56 0.09 -9.22 16 19 C -0.11 -1.07 5.98 -27.88 -0.17 -1.23 16 20 C -0.14 -1.49 5.41 -90.62 -0.49 -1.98 16 21 C -0.18 -1.83 10.18 -26.69 -0.27 -2.10 16 22 C -0.18 -1.55 10.26 -26.69 -0.27 -1.82 16 23 C -0.14 -0.96 7.37 -25.92 -0.19 -1.16 16 24 C -0.14 -1.14 7.99 -25.92 -0.21 -1.34 16 25 C -0.13 -1.48 6.95 -25.92 -0.18 -1.66 16 26 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 27 H 0.09 1.55 8.14 -51.92 -0.42 1.13 16 28 H 0.09 1.55 8.14 -51.92 -0.42 1.12 16 29 H 0.40 3.34 8.67 -40.82 -0.35 2.98 16 30 H 0.08 1.43 7.34 -51.93 -0.38 1.05 16 31 H 0.07 0.81 7.94 -51.93 -0.41 0.40 16 32 H 0.40 3.34 8.11 -40.82 -0.33 3.01 16 33 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.10 0.87 7.87 -51.93 -0.41 0.46 16 35 H 0.12 1.43 7.31 -51.93 -0.38 1.05 16 36 H 0.10 1.00 8.03 -51.93 -0.42 0.58 16 37 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 38 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 39 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.07 0.41 8.09 -51.93 -0.42 -0.01 16 41 H 0.09 0.60 7.96 -51.93 -0.41 0.18 16 42 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.09 0.90 8.10 -51.93 -0.42 0.48 16 45 H 0.08 1.20 7.19 -51.92 -0.37 0.83 16 LS Contribution 387.96 15.07 5.85 5.85 Total: -1.00 -36.00 387.96 -9.90 -45.90 By element: Atomic # 1 Polarization: 13.26 SS G_CDS: -7.24 Total: 6.02 kcal Atomic # 6 Polarization: -6.50 SS G_CDS: -1.63 Total: -8.13 kcal Atomic # 7 Polarization: -42.33 SS G_CDS: 0.20 Total: -42.13 kcal Atomic # 8 Polarization: -20.10 SS G_CDS: 0.16 Total: -19.94 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Atomic # 16 Polarization: -1.52 SS G_CDS: -2.21 Total: -3.73 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -36.00 -9.90 -45.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001062387805.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.566 kcal (2) G-P(sol) polarization free energy of solvation -35.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds