Wall clock time and date at job start Tue Mar 31 2020 15:01:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86796 * 119.99984 * 2 1 4 4 H 1.48498 * 109.47062 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47241 * 300.00152 * 3 2 1 6 6 H 1.48502 * 109.47005 * 60.00381 * 3 2 1 7 7 C 1.38805 * 119.99952 * 180.02562 * 2 1 3 8 8 H 1.07992 * 119.99525 * 179.97438 * 7 2 1 9 9 S 1.76195 * 119.99868 * 359.97438 * 7 2 1 10 10 C 1.80996 * 99.99884 * 180.02562 * 9 7 2 11 11 C 1.50708 * 109.47252 * 179.97438 * 10 9 7 12 12 O 1.21281 * 119.99686 * 0.02562 * 11 10 9 13 13 N 1.34777 * 120.00141 * 179.97438 * 11 10 9 14 14 C 1.46493 * 120.00129 * 174.97223 * 13 11 10 15 15 C 1.53010 * 112.84911 * 294.02337 * 14 13 11 16 16 N 1.46504 * 109.47083 * 311.52266 * 15 14 13 17 17 C 1.34770 * 119.99770 * 174.96292 * 16 15 14 18 18 O 1.21277 * 120.00339 * 359.97438 * 17 16 15 19 19 C 1.50701 * 119.99779 * 180.02562 * 17 16 15 20 20 C 1.53007 * 109.47254 * 179.97438 * 19 17 16 21 21 C 1.52996 * 117.49558 * 243.74549 * 20 19 17 22 22 C 1.52996 * 117.49973 * 175.08079 * 20 19 17 23 23 C 1.53775 * 113.61642 * 162.71865 * 14 13 11 24 24 C 1.53782 * 87.08260 * 270.88377 * 23 14 13 25 25 C 1.53778 * 113.61810 * 65.22018 * 14 13 11 26 26 H 0.96998 * 120.00434 * 359.97438 * 1 2 3 27 27 H 1.09000 * 109.47582 * 299.99559 * 10 9 7 28 28 H 1.09000 * 109.47069 * 59.99999 * 10 9 7 29 29 H 0.97000 * 119.99644 * 354.97698 * 13 11 10 30 30 H 1.09002 * 109.46765 * 71.51831 * 15 14 13 31 31 H 1.08994 * 109.47258 * 191.52127 * 15 14 13 32 32 H 0.96999 * 119.99881 * 354.95553 * 16 15 14 33 33 H 1.08999 * 109.46670 * 299.98744 * 19 17 16 34 34 H 1.08997 * 109.47467 * 59.99252 * 19 17 16 35 35 H 1.09001 * 115.54453 * 29.41353 * 20 19 17 36 36 H 1.08996 * 117.50560 * 359.97438 * 21 20 19 37 37 H 1.08999 * 117.49606 * 145.02175 * 21 20 19 38 38 H 1.08995 * 117.49871 * 214.97359 * 22 20 19 39 39 H 1.09002 * 117.50013 * 0.02562 * 22 20 19 40 40 H 1.09000 * 113.61589 * 25.43393 * 23 14 13 41 41 H 1.09000 * 113.61764 * 156.33151 * 23 14 13 42 42 H 1.08996 * 113.61346 * 220.02295 * 24 23 14 43 43 H 1.08999 * 113.61492 * 89.11500 * 24 23 14 44 44 H 1.08995 * 113.61919 * 203.66926 * 25 14 13 45 45 H 1.09010 * 113.61004 * 334.56873 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3463 -0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8916 2.3964 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2020 -0.0010 9 16 1.1293 -2.7280 -0.0005 10 6 2.5158 -3.8914 -0.0005 11 6 1.9873 -5.3028 0.0001 12 8 0.7910 -5.5023 0.0000 13 7 2.8441 -6.3432 -0.0003 14 6 2.3342 -7.7120 0.1115 15 6 1.6787 -7.9931 1.4652 16 7 2.5620 -7.5342 2.5402 17 6 2.1474 -7.5864 3.8214 18 8 1.0429 -8.0127 4.0845 19 6 3.0557 -7.1138 4.9271 20 6 2.3485 -7.2788 6.2739 21 6 2.0454 -6.0097 7.0728 22 6 3.1512 -6.9611 7.5370 23 6 3.3491 -8.7844 -0.3182 24 6 2.7865 -8.6343 -1.7415 25 6 1.4802 -8.1513 -1.0895 26 1 -0.4851 0.8400 0.0004 27 1 3.1244 -3.7314 -0.8905 28 1 3.1244 -3.7313 0.8894 29 1 3.7983 -6.1856 -0.0746 30 1 0.7278 -7.4637 1.5253 31 1 1.5056 -9.0641 1.5696 32 1 3.4453 -7.1929 2.3297 33 1 3.9715 -7.7049 4.9226 34 1 3.3006 -6.0630 4.7721 35 1 1.6255 -8.0927 6.3284 36 1 2.3501 -5.0572 6.6393 37 1 1.1231 -5.9888 7.6534 38 1 2.9559 -7.5655 8.4227 39 1 4.1830 -6.6340 7.4086 40 1 4.3872 -8.4661 -0.2232 41 1 3.1634 -9.7633 0.1238 42 1 2.6853 -9.5805 -2.2730 43 1 3.2895 -7.8680 -2.3313 44 1 0.7835 -8.9571 -0.8585 45 1 1.0095 -7.3217 -1.6173 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001062387805.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:01:35 Heat of formation + Delta-G solvation = -61.136255 kcal Electronic energy + Delta-G solvation = -25456.661487 eV Core-core repulsion = 21793.505556 eV Total energy + Delta-G solvation = -3663.155930 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.145 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.76415 -40.56878 -39.06955 -37.96041 -35.50244 -34.59542 -34.28081 -31.26885 -30.52808 -28.32745 -27.64999 -26.72902 -23.95875 -23.23672 -22.39749 -21.80474 -21.04775 -20.19971 -19.83115 -18.46920 -17.82364 -17.35557 -16.88890 -16.79350 -16.74845 -16.37364 -16.15123 -15.81946 -15.49902 -15.05139 -14.94303 -14.63696 -14.58794 -14.38929 -13.91848 -13.61740 -13.33105 -13.21230 -13.16118 -12.92947 -12.70521 -12.57737 -12.42353 -12.32948 -11.87675 -11.84759 -11.69899 -11.36727 -11.31710 -11.16567 -11.01719 -10.79801 -10.76874 -10.25614 -10.08694 -10.06932 -8.66796 -8.35294 -6.13117 1.26205 1.40746 1.46530 1.56836 1.63495 1.65474 2.08782 2.26215 2.31003 2.92040 2.99303 3.30304 3.40131 3.60690 3.71394 3.75758 3.80820 3.90391 4.01598 4.03819 4.17784 4.30850 4.41835 4.47505 4.51520 4.55084 4.64347 4.74011 4.78620 4.79922 4.82522 4.87357 5.03969 5.07072 5.12947 5.13970 5.24680 5.26279 5.33603 5.41366 5.45092 5.67682 6.19234 6.52675 6.55939 7.06299 7.27192 7.30119 8.74109 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.008344 B = 0.003763 C = 0.002779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3355.068904 B = 7439.719861 C =10071.530044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.013 3.987 3 Si 0.998 3.002 4 H -0.254 1.254 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.544 4.544 8 H 0.084 0.916 9 S -0.156 6.156 10 C -0.128 4.128 11 C 0.537 3.463 12 O -0.554 6.554 13 N -0.692 5.692 14 C 0.137 3.863 15 C 0.127 3.873 16 N -0.711 5.711 17 C 0.506 3.494 18 O -0.591 6.591 19 C -0.101 4.101 20 C -0.158 4.158 21 C -0.198 4.198 22 C -0.153 4.153 23 C -0.110 4.110 24 C -0.129 4.129 25 C -0.149 4.149 26 H 0.270 0.730 27 H 0.110 0.890 28 H 0.110 0.890 29 H 0.420 0.580 30 H 0.030 0.970 31 H 0.083 0.917 32 H 0.414 0.586 33 H 0.132 0.868 34 H 0.106 0.894 35 H 0.092 0.908 36 H 0.095 0.905 37 H 0.086 0.914 38 H 0.103 0.897 39 H 0.115 0.885 40 H 0.103 0.897 41 H 0.112 0.888 42 H 0.087 0.913 43 H 0.081 0.919 44 H 0.093 0.907 45 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.073 -19.501 5.189 26.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.192 4.192 3 Si 0.820 3.180 4 H -0.177 1.177 5 H -0.200 1.200 6 H -0.201 1.201 7 C -0.691 4.691 8 H 0.102 0.898 9 S 0.072 5.928 10 C -0.280 4.280 11 C 0.323 3.677 12 O -0.431 6.431 13 N -0.347 5.347 14 C 0.050 3.950 15 C 0.001 3.999 16 N -0.363 5.363 17 C 0.294 3.706 18 O -0.471 6.471 19 C -0.140 4.140 20 C -0.176 4.176 21 C -0.235 4.235 22 C -0.190 4.190 23 C -0.148 4.148 24 C -0.166 4.166 25 C -0.188 4.188 26 H 0.079 0.921 27 H 0.128 0.872 28 H 0.128 0.872 29 H 0.259 0.741 30 H 0.049 0.951 31 H 0.101 0.899 32 H 0.251 0.749 33 H 0.150 0.850 34 H 0.124 0.876 35 H 0.110 0.890 36 H 0.113 0.887 37 H 0.105 0.895 38 H 0.121 0.879 39 H 0.133 0.867 40 H 0.121 0.879 41 H 0.131 0.869 42 H 0.106 0.894 43 H 0.100 0.900 44 H 0.112 0.888 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 14.177 -20.051 5.370 25.137 hybrid contribution 1.366 1.795 -0.226 2.266 sum 15.542 -18.256 5.144 24.522 Atomic orbital electron populations 1.70198 1.08077 1.28498 1.48196 1.26133 0.95904 1.03374 0.93780 0.84914 0.78746 0.76350 0.77996 1.17733 1.20043 1.20083 1.23235 0.95345 0.91946 1.58611 0.89770 1.85694 1.10728 0.99395 1.97032 1.23368 1.03428 0.94419 1.06738 1.20030 0.86318 0.86446 0.74873 1.90719 1.17521 1.85901 1.48942 1.45362 1.10380 1.03561 1.75420 1.21664 0.98126 0.82618 0.92598 1.21510 0.93175 0.99491 0.85714 1.45716 1.19850 1.65370 1.05317 1.21299 0.87591 0.77074 0.84653 1.90676 1.23807 1.48518 1.84120 1.21257 0.98584 1.04258 0.89944 1.22002 1.03490 1.00359 0.91792 1.23130 1.01021 0.94670 1.04671 1.23095 0.97180 1.01906 0.96808 1.23222 0.98718 0.97504 0.95310 1.22800 0.94821 1.02227 0.96755 1.23264 0.98229 1.00838 0.96436 0.92084 0.87209 0.87208 0.74125 0.95108 0.89867 0.74931 0.84974 0.87624 0.88965 0.88693 0.89514 0.87872 0.86682 0.87894 0.86944 0.89405 0.90019 0.88807 0.93689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.37 13.22 21.65 0.29 -56.09 16 2 C 0.01 0.72 5.49 84.86 0.47 1.18 16 3 Si 1.00 43.26 29.55 68.60 2.03 45.29 16 4 H -0.25 -10.14 7.11 99.48 0.71 -9.43 16 5 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 6 H -0.28 -11.64 7.11 99.48 0.71 -10.94 16 7 C -0.54 -30.66 9.50 67.96 0.65 -30.01 16 8 H 0.08 4.37 7.80 -2.91 -0.02 4.35 16 9 S -0.16 -8.57 20.57 -56.49 -1.16 -9.73 16 10 C -0.13 -4.81 6.16 71.24 0.44 -4.37 16 11 C 0.54 18.47 7.40 87.66 0.65 19.12 16 12 O -0.55 -24.99 13.86 -3.03 -0.04 -25.03 16 13 N -0.69 -14.54 4.53 -420.54 -1.91 -16.44 16 14 C 0.14 2.65 0.63 4.13 0.00 2.65 16 15 C 0.13 3.12 4.93 86.38 0.43 3.55 16 16 N -0.71 -14.79 5.38 -463.05 -2.49 -17.29 16 17 C 0.51 13.03 7.83 87.66 0.69 13.72 16 18 O -0.59 -21.45 15.56 -3.02 -0.05 -21.49 16 19 C -0.10 -1.76 5.98 29.85 0.18 -1.58 16 20 C -0.16 -3.26 5.41 -10.79 -0.06 -3.32 16 21 C -0.20 -4.05 10.18 30.62 0.31 -3.74 16 22 C -0.15 -2.28 10.26 30.62 0.31 -1.96 16 23 C -0.11 -1.08 7.37 31.12 0.23 -0.85 16 24 C -0.13 -1.71 7.99 31.12 0.25 -1.47 16 25 C -0.15 -3.24 6.95 31.12 0.22 -3.02 16 26 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 27 H 0.11 3.65 8.14 -2.40 -0.02 3.63 16 28 H 0.11 3.64 8.14 -2.40 -0.02 3.62 16 29 H 0.42 5.34 8.67 -92.71 -0.80 4.54 16 30 H 0.03 1.11 7.34 -2.39 -0.02 1.09 16 31 H 0.08 1.85 7.94 -2.39 -0.02 1.83 16 32 H 0.41 5.64 8.11 -92.71 -0.75 4.89 16 33 H 0.13 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.11 1.66 7.87 -2.39 -0.02 1.64 16 35 H 0.09 2.37 7.31 -2.39 -0.02 2.35 16 36 H 0.09 1.93 8.03 -2.39 -0.02 1.92 16 37 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 38 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 39 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 40 H 0.10 0.51 8.09 -2.39 -0.02 0.49 16 41 H 0.11 0.85 7.96 -2.39 -0.02 0.84 16 42 H 0.09 0.92 8.14 -2.39 -0.02 0.91 16 43 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 44 H 0.09 1.91 8.10 -2.39 -0.02 1.89 16 45 H 0.04 1.35 7.19 -2.38 -0.02 1.33 16 Total: -1.00 -86.23 387.96 0.87 -85.37 By element: Atomic # 1 Polarization: 26.07 SS G_CDS: -0.55 Total: 25.52 kcal Atomic # 6 Polarization: -14.86 SS G_CDS: 4.75 Total: -10.10 kcal Atomic # 7 Polarization: -85.71 SS G_CDS: -4.11 Total: -89.82 kcal Atomic # 8 Polarization: -46.43 SS G_CDS: -0.09 Total: -46.52 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.29 kcal Atomic # 16 Polarization: -8.57 SS G_CDS: -1.16 Total: -9.73 kcal Total: -86.23 0.87 -85.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001062387805.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.230 kcal (2) G-P(sol) polarization free energy of solvation -86.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds