Wall clock time and date at job start Tue Mar 31 2020 15:01:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31639 * 1 3 3 Si 1.86798 * 119.99773 * 2 1 4 4 H 1.48504 * 109.46999 * 240.00052 * 3 2 1 5 5 H 1.48497 * 109.47321 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.46638 * 120.00140 * 3 2 1 7 7 C 1.38794 * 119.99732 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99908 * 180.02562 * 7 2 1 9 9 S 1.76203 * 120.00456 * 359.97438 * 7 2 1 10 10 C 1.81000 * 100.00035 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.47106 * 180.02562 * 10 9 7 12 12 O 1.21280 * 119.99806 * 359.97438 * 11 10 9 13 13 N 1.34769 * 120.00190 * 180.02562 * 11 10 9 14 14 C 1.46500 * 120.00179 * 179.97438 * 13 11 10 15 15 C 1.53001 * 109.47116 * 174.95649 * 14 13 11 16 16 N 1.46498 * 112.85420 * 311.52091 * 15 14 13 17 17 C 1.34772 * 119.99779 * 294.02634 * 16 15 14 18 18 O 1.21281 * 120.00053 * 354.96974 * 17 16 15 19 19 C 1.50704 * 120.00145 * 174.96972 * 17 16 15 20 20 C 1.53000 * 109.47415 * 179.97438 * 19 17 16 21 21 C 1.52998 * 117.51745 * 116.28361 * 20 19 17 22 22 C 1.52995 * 117.49874 * 184.91377 * 20 19 17 23 23 C 1.53782 * 113.68853 * 82.79188 * 15 14 13 24 24 C 1.53781 * 87.08407 * 139.99249 * 23 15 14 25 25 C 1.53780 * 113.61392 * 180.32200 * 15 14 13 26 26 H 0.96989 * 120.00087 * 359.97438 * 1 2 3 27 27 H 1.09000 * 109.47167 * 60.00563 * 10 9 7 28 28 H 1.08996 * 109.47193 * 300.00032 * 10 9 7 29 29 H 0.97000 * 120.00237 * 0.02562 * 13 11 10 30 30 H 1.08998 * 109.47004 * 54.96364 * 14 13 11 31 31 H 1.09001 * 109.47423 * 294.95932 * 14 13 11 32 32 H 0.96998 * 119.99856 * 114.02007 * 16 15 14 33 33 H 1.09001 * 109.46661 * 59.99874 * 19 17 16 34 34 H 1.09000 * 109.47253 * 300.00092 * 19 17 16 35 35 H 1.08995 * 115.54713 * 330.58574 * 20 19 17 36 36 H 1.08995 * 117.49902 * 214.97056 * 21 20 19 37 37 H 1.09002 * 117.49764 * 359.97438 * 21 20 19 38 38 H 1.09001 * 117.50034 * 359.97438 * 22 20 19 39 39 H 1.09004 * 117.49864 * 144.99501 * 22 20 19 40 40 H 1.09010 * 113.61182 * 254.53778 * 23 15 14 41 41 H 1.08992 * 113.61651 * 25.43610 * 23 15 14 42 42 H 1.09003 * 113.61058 * 220.01820 * 24 23 15 43 43 H 1.08992 * 113.69403 * 89.12516 * 24 23 15 44 44 H 1.08999 * 113.61459 * 334.48396 * 25 15 14 45 45 H 1.08997 * 113.61793 * 105.30535 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.1041 1.6964 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1041 1.6963 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 16 1.1293 -2.7280 -0.0005 10 6 2.5159 -3.8914 -0.0005 11 6 1.9875 -5.3028 -0.0012 12 8 0.7912 -5.5023 -0.0011 13 7 2.8442 -6.3431 -0.0008 14 6 2.3304 -7.7151 -0.0008 15 6 3.4973 -8.6966 -0.1271 16 7 4.4226 -8.3446 -1.2070 17 6 4.0113 -8.3938 -2.4895 18 8 2.9061 -8.8162 -2.7561 19 6 4.9247 -7.9241 -3.5923 20 6 4.2210 -8.0862 -4.9412 21 6 3.9253 -6.8160 -5.7413 22 6 5.0287 -7.7707 -6.2017 23 6 4.1964 -9.0004 1.2085 24 6 4.2877 -10.4617 0.7382 25 6 3.0625 -10.1715 -0.1448 26 1 -0.4850 0.8399 0.0004 27 1 3.1245 -3.7314 0.8895 28 1 3.1245 -3.7313 -0.8905 29 1 3.8009 -6.1835 0.0003 30 1 1.6508 -7.8485 -0.8425 31 1 1.7966 -7.9033 0.9307 32 1 5.3311 -8.0760 -0.9990 33 1 5.8381 -8.5190 -3.5856 34 1 5.1735 -6.8745 -3.4357 35 1 3.4953 -8.8974 -4.9983 36 1 3.0050 -6.7917 -6.3249 37 1 4.2317 -5.8646 -5.3066 38 1 6.0612 -7.4473 -6.0701 39 1 4.8343 -8.3745 -7.0882 40 1 5.1664 -8.5144 1.3141 41 1 3.5551 -8.8609 2.0787 42 1 4.0945 -11.1875 1.5283 43 1 5.1917 -10.6838 0.1714 44 1 2.1111 -10.3523 0.3555 45 1 3.1156 -10.6306 -1.1319 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001062578494.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:01:39 Heat of formation + Delta-G solvation = -34.547984 kcal Electronic energy + Delta-G solvation = -25425.977335 eV Core-core repulsion = 21763.974359 eV Total energy + Delta-G solvation = -3662.002976 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.145 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.98239 -39.05080 -38.49476 -37.03171 -34.21189 -33.42134 -32.41713 -30.15398 -29.49917 -27.17599 -26.12141 -25.45290 -23.16229 -22.55148 -21.77244 -20.40445 -20.13095 -19.45286 -17.90184 -17.53303 -16.63452 -16.28670 -15.87994 -15.63280 -15.33830 -15.02574 -14.93257 -14.79634 -14.23829 -14.00324 -13.89903 -13.57123 -13.27177 -12.97990 -12.70928 -12.63975 -12.56142 -12.06772 -11.71374 -11.70808 -11.65150 -11.28759 -11.15526 -11.03574 -11.03480 -10.76203 -10.69550 -10.56589 -10.24371 -9.85817 -9.81929 -9.42197 -9.21306 -9.05267 -8.79408 -8.21587 -6.48185 -6.20243 -3.90796 2.46176 2.75233 3.07968 3.16679 3.23586 3.28058 3.32296 3.60374 3.73246 4.06631 4.21513 4.27161 4.41483 4.43223 4.47093 4.57514 4.69860 4.87562 5.02658 5.14518 5.16649 5.20990 5.26836 5.32523 5.36851 5.40930 5.44863 5.51193 5.54438 5.64308 5.70848 5.75329 5.76104 5.88400 5.90811 5.93025 6.00350 6.08652 6.13842 6.34660 6.68196 7.22909 7.59813 7.76092 8.04525 8.35842 8.67912 9.24581 10.87153 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.011217 B = 0.003103 C = 0.002616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2495.675328 B = 9019.927889 C =10699.409895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.918 3.082 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.537 4.537 8 H 0.071 0.929 9 S -0.059 6.059 10 C -0.152 4.152 11 C 0.530 3.470 12 O -0.516 6.516 13 N -0.732 5.732 14 C 0.124 3.876 15 C 0.141 3.859 16 N -0.715 5.715 17 C 0.520 3.480 18 O -0.522 6.522 19 C -0.111 4.111 20 C -0.142 4.142 21 C -0.175 4.175 22 C -0.181 4.181 23 C -0.136 4.136 24 C -0.140 4.140 25 C -0.132 4.132 26 H 0.269 0.731 27 H 0.088 0.912 28 H 0.087 0.913 29 H 0.393 0.607 30 H 0.080 0.920 31 H 0.072 0.928 32 H 0.401 0.599 33 H 0.095 0.905 34 H 0.096 0.904 35 H 0.117 0.883 36 H 0.095 0.905 37 H 0.096 0.904 38 H 0.093 0.907 39 H 0.094 0.906 40 H 0.074 0.926 41 H 0.099 0.901 42 H 0.071 0.929 43 H 0.079 0.921 44 H 0.092 0.908 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.219 -21.149 -3.496 26.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.200 1.200 5 H -0.208 1.208 6 H -0.200 1.200 7 C -0.685 4.685 8 H 0.090 0.910 9 S 0.168 5.832 10 C -0.302 4.302 11 C 0.316 3.684 12 O -0.390 6.390 13 N -0.387 5.387 14 C -0.001 4.001 15 C 0.054 3.946 16 N -0.368 5.368 17 C 0.307 3.693 18 O -0.397 6.397 19 C -0.150 4.150 20 C -0.160 4.160 21 C -0.212 4.212 22 C -0.218 4.218 23 C -0.173 4.173 24 C -0.177 4.177 25 C -0.171 4.171 26 H 0.079 0.921 27 H 0.106 0.894 28 H 0.105 0.895 29 H 0.227 0.773 30 H 0.098 0.902 31 H 0.090 0.910 32 H 0.235 0.765 33 H 0.113 0.887 34 H 0.114 0.886 35 H 0.135 0.865 36 H 0.114 0.886 37 H 0.114 0.886 38 H 0.111 0.889 39 H 0.112 0.888 40 H 0.092 0.908 41 H 0.117 0.883 42 H 0.090 0.910 43 H 0.098 0.902 44 H 0.111 0.889 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 13.208 -21.669 -3.702 25.645 hybrid contribution 2.936 1.585 0.101 3.338 sum 16.144 -20.083 -3.602 26.018 Atomic orbital electron populations 1.70010 1.05948 1.27557 1.46751 1.24989 0.95019 0.98992 0.94557 0.86231 0.79243 0.81294 0.78763 1.19958 1.20802 1.19951 1.22827 0.94842 0.91744 1.59067 0.91048 1.85434 1.04886 0.96188 1.96690 1.23512 1.06517 0.95554 1.04651 1.20289 0.86576 0.86234 0.75317 1.90708 1.15363 1.85556 1.47398 1.45819 1.09586 1.05355 1.77898 1.21551 0.95304 0.80356 1.02906 1.21564 0.90497 0.94913 0.87663 1.45670 1.15167 1.70688 1.05290 1.20574 0.88058 0.77517 0.83167 1.90716 1.21429 1.44600 1.82969 1.21231 0.98342 1.03238 0.92228 1.22015 1.02723 1.01251 0.90018 1.23055 1.00135 0.94325 1.03718 1.22993 0.96881 1.03983 0.97988 1.23280 1.01248 0.96780 0.96041 1.22843 0.98723 0.96547 0.99611 1.23159 0.98625 0.94018 1.01280 0.92125 0.89377 0.89504 0.77346 0.90182 0.90981 0.76456 0.88699 0.88579 0.86485 0.88604 0.88593 0.88863 0.88768 0.90761 0.88258 0.90992 0.90231 0.88949 0.90241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.38 13.22 55.49 0.73 -25.65 16 2 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 3 Si 0.92 21.44 29.55 -169.99 -5.02 16.42 16 4 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 5 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 6 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 7 C -0.54 -15.38 9.50 30.94 0.29 -15.09 16 8 H 0.07 1.92 7.80 -52.49 -0.41 1.52 16 9 S -0.06 -1.62 20.57 -107.50 -2.21 -3.83 16 10 C -0.15 -3.11 6.16 36.01 0.22 -2.89 16 11 C 0.53 10.28 7.85 -10.99 -0.09 10.19 16 12 O -0.52 -12.32 15.86 5.56 0.09 -12.23 16 13 N -0.73 -10.14 5.38 -60.29 -0.32 -10.46 16 14 C 0.12 1.61 4.93 -4.04 -0.02 1.59 16 15 C 0.14 1.25 0.63 -131.01 -0.08 1.16 16 16 N -0.71 -5.47 4.53 -46.85 -0.21 -5.69 16 17 C 0.52 5.34 7.39 -10.99 -0.08 5.26 16 18 O -0.52 -7.60 13.56 5.56 0.08 -7.53 16 19 C -0.11 -0.85 5.98 -27.88 -0.17 -1.02 16 20 C -0.14 -1.34 5.41 -90.62 -0.49 -1.83 16 21 C -0.18 -1.71 10.18 -26.73 -0.27 -1.98 16 22 C -0.18 -1.42 10.25 -26.73 -0.27 -1.69 16 23 C -0.14 -0.88 7.37 -25.92 -0.19 -1.07 16 24 C -0.14 -0.87 7.99 -25.92 -0.21 -1.08 16 25 C -0.13 -1.15 6.95 -25.92 -0.18 -1.33 16 26 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 27 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16 28 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16 29 H 0.39 4.20 8.11 -40.82 -0.33 3.87 16 30 H 0.08 1.32 7.34 -51.93 -0.38 0.94 16 31 H 0.07 0.93 7.94 -51.93 -0.41 0.52 16 32 H 0.40 1.82 8.67 -40.82 -0.35 1.47 16 33 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.10 0.67 7.88 -51.93 -0.41 0.26 16 35 H 0.12 1.32 7.31 -51.93 -0.38 0.94 16 36 H 0.10 0.97 8.14 -51.93 -0.42 0.54 16 37 H 0.10 0.93 8.03 -51.93 -0.42 0.52 16 38 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.07 0.38 8.09 -51.92 -0.42 -0.04 16 41 H 0.10 0.66 7.96 -51.93 -0.41 0.25 16 42 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.09 0.79 8.10 -51.93 -0.42 0.37 16 45 H 0.08 0.82 7.19 -51.93 -0.37 0.45 16 LS Contribution 387.96 15.07 5.85 5.85 Total: -1.00 -36.87 387.96 -9.90 -46.77 By element: Atomic # 1 Polarization: 11.34 SS G_CDS: -7.24 Total: 4.10 kcal Atomic # 6 Polarization: -6.12 SS G_CDS: -1.63 Total: -7.75 kcal Atomic # 7 Polarization: -41.99 SS G_CDS: 0.20 Total: -41.80 kcal Atomic # 8 Polarization: -19.92 SS G_CDS: 0.16 Total: -19.76 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -36.87 -9.90 -46.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001062578494.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.223 kcal (2) G-P(sol) polarization free energy of solvation -36.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds