Wall clock time and date at job start Tue Mar 31 2020 15:01:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31639 * 1 3 3 Si 1.86798 * 119.99773 * 2 1 4 4 H 1.48504 * 109.46999 * 240.00052 * 3 2 1 5 5 H 1.48497 * 109.47321 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.46638 * 120.00140 * 3 2 1 7 7 C 1.38794 * 119.99732 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99908 * 180.02562 * 7 2 1 9 9 S 1.76203 * 120.00456 * 359.97438 * 7 2 1 10 10 C 1.81000 * 100.00035 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.47106 * 180.02562 * 10 9 7 12 12 O 1.21280 * 119.99806 * 359.97438 * 11 10 9 13 13 N 1.34769 * 120.00190 * 180.02562 * 11 10 9 14 14 C 1.46500 * 120.00179 * 179.97438 * 13 11 10 15 15 C 1.53001 * 109.47116 * 174.95649 * 14 13 11 16 16 N 1.46498 * 112.85420 * 311.52091 * 15 14 13 17 17 C 1.34772 * 119.99779 * 294.02634 * 16 15 14 18 18 O 1.21281 * 120.00053 * 354.96974 * 17 16 15 19 19 C 1.50704 * 120.00145 * 174.96972 * 17 16 15 20 20 C 1.53000 * 109.47415 * 179.97438 * 19 17 16 21 21 C 1.52998 * 117.51745 * 116.28361 * 20 19 17 22 22 C 1.52995 * 117.49874 * 184.91377 * 20 19 17 23 23 C 1.53782 * 113.68853 * 82.79188 * 15 14 13 24 24 C 1.53781 * 87.08407 * 139.99249 * 23 15 14 25 25 C 1.53780 * 113.61392 * 180.32200 * 15 14 13 26 26 H 0.96989 * 120.00087 * 359.97438 * 1 2 3 27 27 H 1.09000 * 109.47167 * 60.00563 * 10 9 7 28 28 H 1.08996 * 109.47193 * 300.00032 * 10 9 7 29 29 H 0.97000 * 120.00237 * 0.02562 * 13 11 10 30 30 H 1.08998 * 109.47004 * 54.96364 * 14 13 11 31 31 H 1.09001 * 109.47423 * 294.95932 * 14 13 11 32 32 H 0.96998 * 119.99856 * 114.02007 * 16 15 14 33 33 H 1.09001 * 109.46661 * 59.99874 * 19 17 16 34 34 H 1.09000 * 109.47253 * 300.00092 * 19 17 16 35 35 H 1.08995 * 115.54713 * 330.58574 * 20 19 17 36 36 H 1.08995 * 117.49902 * 214.97056 * 21 20 19 37 37 H 1.09002 * 117.49764 * 359.97438 * 21 20 19 38 38 H 1.09001 * 117.50034 * 359.97438 * 22 20 19 39 39 H 1.09004 * 117.49864 * 144.99501 * 22 20 19 40 40 H 1.09010 * 113.61182 * 254.53778 * 23 15 14 41 41 H 1.08992 * 113.61651 * 25.43610 * 23 15 14 42 42 H 1.09003 * 113.61058 * 220.01820 * 24 23 15 43 43 H 1.08992 * 113.69403 * 89.12516 * 24 23 15 44 44 H 1.08999 * 113.61459 * 334.48396 * 25 15 14 45 45 H 1.08997 * 113.61793 * 105.30535 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.1041 1.6964 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1041 1.6963 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 16 1.1293 -2.7280 -0.0005 10 6 2.5159 -3.8914 -0.0005 11 6 1.9875 -5.3028 -0.0012 12 8 0.7912 -5.5023 -0.0011 13 7 2.8442 -6.3431 -0.0008 14 6 2.3304 -7.7151 -0.0008 15 6 3.4973 -8.6966 -0.1271 16 7 4.4226 -8.3446 -1.2070 17 6 4.0113 -8.3938 -2.4895 18 8 2.9061 -8.8162 -2.7561 19 6 4.9247 -7.9241 -3.5923 20 6 4.2210 -8.0862 -4.9412 21 6 3.9253 -6.8160 -5.7413 22 6 5.0287 -7.7707 -6.2017 23 6 4.1964 -9.0004 1.2085 24 6 4.2877 -10.4617 0.7382 25 6 3.0625 -10.1715 -0.1448 26 1 -0.4850 0.8399 0.0004 27 1 3.1245 -3.7314 0.8895 28 1 3.1245 -3.7313 -0.8905 29 1 3.8009 -6.1835 0.0003 30 1 1.6508 -7.8485 -0.8425 31 1 1.7966 -7.9033 0.9307 32 1 5.3311 -8.0760 -0.9990 33 1 5.8381 -8.5190 -3.5856 34 1 5.1735 -6.8745 -3.4357 35 1 3.4953 -8.8974 -4.9983 36 1 3.0050 -6.7917 -6.3249 37 1 4.2317 -5.8646 -5.3066 38 1 6.0612 -7.4473 -6.0701 39 1 4.8343 -8.3745 -7.0882 40 1 5.1664 -8.5144 1.3141 41 1 3.5551 -8.8609 2.0787 42 1 4.0945 -11.1875 1.5283 43 1 5.1917 -10.6838 0.1714 44 1 2.1111 -10.3523 0.3555 45 1 3.1156 -10.6306 -1.1319 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001062578494.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:01:38 Heat of formation + Delta-G solvation = -60.904592 kcal Electronic energy + Delta-G solvation = -25427.120243 eV Core-core repulsion = 21763.974359 eV Total energy + Delta-G solvation = -3663.145884 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.145 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.80075 -40.40669 -39.39985 -37.78108 -35.53042 -34.58322 -34.25463 -31.52103 -30.35436 -28.34858 -27.58681 -26.74443 -24.01653 -23.24193 -22.51938 -21.76686 -20.94279 -20.25556 -19.82251 -18.28062 -17.98192 -17.55102 -16.87937 -16.78688 -16.63844 -16.42383 -16.11153 -15.77688 -15.61956 -15.00887 -14.91288 -14.64373 -14.58312 -14.44726 -13.98335 -13.52470 -13.36032 -13.24183 -13.17273 -12.85973 -12.73283 -12.60658 -12.42245 -12.33476 -11.89424 -11.85531 -11.73158 -11.39160 -11.28033 -11.12614 -11.00786 -10.94604 -10.67448 -10.28009 -10.13224 -10.05642 -8.67913 -8.34181 -6.13254 1.25905 1.44517 1.46687 1.56169 1.59210 1.67776 2.04076 2.27156 2.30929 2.91215 2.99886 3.30663 3.38670 3.61131 3.68575 3.75613 3.79682 3.92591 4.00228 4.02209 4.17708 4.26839 4.38140 4.46950 4.47681 4.59034 4.66499 4.73956 4.77090 4.79289 4.80881 4.84965 5.03723 5.05704 5.10813 5.12069 5.23787 5.24939 5.35702 5.39325 5.41343 5.67794 6.19640 6.47358 6.59683 7.06560 7.22723 7.33531 8.74966 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.011217 B = 0.003103 C = 0.002616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2495.675328 B = 9019.927889 C =10699.409895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.012 3.988 3 Si 1.000 3.000 4 H -0.261 1.261 5 H -0.280 1.280 6 H -0.260 1.260 7 C -0.546 4.546 8 H 0.085 0.915 9 S -0.156 6.156 10 C -0.125 4.125 11 C 0.529 3.471 12 O -0.570 6.570 13 N -0.702 5.702 14 C 0.126 3.874 15 C 0.140 3.860 16 N -0.698 5.698 17 C 0.513 3.487 18 O -0.574 6.574 19 C -0.103 4.103 20 C -0.154 4.154 21 C -0.199 4.199 22 C -0.156 4.156 23 C -0.123 4.123 24 C -0.124 4.124 25 C -0.141 4.141 26 H 0.271 0.729 27 H 0.114 0.886 28 H 0.108 0.892 29 H 0.414 0.586 30 H 0.038 0.962 31 H 0.072 0.928 32 H 0.421 0.579 33 H 0.130 0.870 34 H 0.111 0.889 35 H 0.090 0.910 36 H 0.080 0.920 37 H 0.096 0.904 38 H 0.116 0.884 39 H 0.099 0.901 40 H 0.101 0.899 41 H 0.099 0.901 42 H 0.082 0.918 43 H 0.092 0.908 44 H 0.086 0.914 45 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.911 -21.145 -2.760 29.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.192 4.192 3 Si 0.821 3.179 4 H -0.186 1.186 5 H -0.205 1.205 6 H -0.184 1.184 7 C -0.694 4.694 8 H 0.103 0.897 9 S 0.071 5.929 10 C -0.276 4.276 11 C 0.315 3.685 12 O -0.448 6.448 13 N -0.355 5.355 14 C 0.001 3.999 15 C 0.052 3.948 16 N -0.353 5.353 17 C 0.301 3.699 18 O -0.453 6.453 19 C -0.142 4.142 20 C -0.173 4.173 21 C -0.236 4.236 22 C -0.193 4.193 23 C -0.160 4.160 24 C -0.161 4.161 25 C -0.180 4.180 26 H 0.080 0.920 27 H 0.132 0.868 28 H 0.126 0.874 29 H 0.251 0.749 30 H 0.057 0.943 31 H 0.090 0.910 32 H 0.260 0.740 33 H 0.148 0.852 34 H 0.129 0.871 35 H 0.108 0.892 36 H 0.099 0.901 37 H 0.115 0.885 38 H 0.134 0.866 39 H 0.117 0.883 40 H 0.119 0.881 41 H 0.118 0.882 42 H 0.101 0.899 43 H 0.111 0.889 44 H 0.104 0.896 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 18.004 -21.693 -2.948 28.345 hybrid contribution 1.451 1.437 -0.164 2.049 sum 19.455 -20.256 -3.112 28.258 Atomic orbital electron populations 1.70191 1.08092 1.28688 1.47977 1.26166 0.95953 1.03429 0.93687 0.84982 0.77775 0.75502 0.79598 1.18568 1.20548 1.18419 1.23174 0.95387 0.91827 1.58977 0.89685 1.85687 1.10714 0.99407 1.97058 1.23331 1.03480 0.93989 1.06803 1.20189 0.86255 0.86890 0.75143 1.90698 1.17721 1.86161 1.50242 1.45496 1.10028 1.04633 1.75371 1.21602 0.96782 0.80369 1.01145 1.21568 0.89944 0.93501 0.89805 1.45526 1.15846 1.69665 1.04217 1.21158 0.87678 0.76678 0.84379 1.90713 1.23797 1.46959 1.83819 1.21273 0.98553 1.04557 0.89860 1.22002 1.03233 1.00044 0.92013 1.23092 1.00869 0.94798 1.04821 1.23075 0.97199 1.01975 0.97026 1.23259 1.02043 0.96772 0.93937 1.22790 0.97492 0.96757 0.99097 1.23200 1.00008 0.93854 1.00891 0.92017 0.86776 0.87403 0.74901 0.94323 0.91014 0.74023 0.85196 0.87133 0.89167 0.90088 0.88537 0.86578 0.88265 0.88059 0.88227 0.89882 0.88947 0.89588 0.92312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.71 13.22 21.65 0.29 -56.42 16 2 C 0.01 0.70 5.49 84.85 0.47 1.17 16 3 Si 1.00 43.41 29.55 68.60 2.03 45.43 16 4 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 5 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 6 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 7 C -0.55 -31.22 9.50 67.95 0.65 -30.58 16 8 H 0.09 4.45 7.80 -2.91 -0.02 4.43 16 9 S -0.16 -8.81 20.57 -56.49 -1.16 -9.97 16 10 C -0.12 -4.99 6.16 71.24 0.44 -4.55 16 11 C 0.53 20.50 7.85 87.66 0.69 21.19 16 12 O -0.57 -28.30 15.86 -3.03 -0.05 -28.35 16 13 N -0.70 -18.52 5.38 -463.07 -2.49 -21.01 16 14 C 0.13 3.27 4.93 86.38 0.43 3.70 16 15 C 0.14 2.26 0.63 4.13 0.00 2.26 16 16 N -0.70 -8.99 4.53 -420.54 -1.91 -10.90 16 17 C 0.51 10.05 7.39 87.66 0.65 10.70 16 18 O -0.57 -17.50 13.56 -3.03 -0.04 -17.54 16 19 C -0.10 -1.36 5.98 29.85 0.18 -1.18 16 20 C -0.15 -2.86 5.41 -10.80 -0.06 -2.92 16 21 C -0.20 -3.89 10.18 30.59 0.31 -3.58 16 22 C -0.16 -2.16 10.25 30.59 0.31 -1.85 16 23 C -0.12 -1.15 7.37 31.12 0.23 -0.92 16 24 C -0.12 -1.17 7.99 31.12 0.25 -0.92 16 25 C -0.14 -2.36 6.95 31.12 0.22 -2.15 16 26 H 0.27 15.65 8.31 -92.72 -0.77 14.87 16 27 H 0.11 3.99 8.14 -2.39 -0.02 3.97 16 28 H 0.11 3.87 8.14 -2.40 -0.02 3.85 16 29 H 0.41 7.52 8.11 -92.71 -0.75 6.77 16 30 H 0.04 1.36 7.34 -2.39 -0.02 1.34 16 31 H 0.07 1.88 7.94 -2.39 -0.02 1.86 16 32 H 0.42 2.01 8.67 -92.71 -0.80 1.21 16 33 H 0.13 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.11 1.18 7.88 -2.39 -0.02 1.16 16 35 H 0.09 2.17 7.31 -2.39 -0.02 2.15 16 36 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 37 H 0.10 1.84 8.03 -2.39 -0.02 1.82 16 38 H 0.12 1.11 8.14 -2.39 -0.02 1.09 16 39 H 0.10 1.27 8.14 -2.38 -0.02 1.25 16 40 H 0.10 0.47 8.09 -2.38 -0.02 0.45 16 41 H 0.10 1.01 7.96 -2.39 -0.02 0.99 16 42 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 43 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 44 H 0.09 1.52 8.10 -2.39 -0.02 1.50 16 45 H 0.06 1.24 7.19 -2.39 -0.02 1.23 16 Total: -1.00 -86.58 387.96 0.87 -85.71 By element: Atomic # 1 Polarization: 23.23 SS G_CDS: -0.55 Total: 22.68 kcal Atomic # 6 Polarization: -14.39 SS G_CDS: 4.75 Total: -9.64 kcal Atomic # 7 Polarization: -84.22 SS G_CDS: -4.11 Total: -88.33 kcal Atomic # 8 Polarization: -45.80 SS G_CDS: -0.09 Total: -45.89 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.43 kcal Atomic # 16 Polarization: -8.81 SS G_CDS: -1.16 Total: -9.97 kcal Total: -86.58 0.87 -85.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001062578494.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.806 kcal (2) G-P(sol) polarization free energy of solvation -86.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds