Wall clock time and date at job start Tue Mar 31 2020 14:56:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86801 * 120.00425 * 2 1 4 4 H 1.48499 * 109.47168 * 240.00096 * 3 2 1 5 5 H 1.48502 * 109.46583 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47321 * 119.99830 * 3 2 1 7 7 C 1.38817 * 120.00071 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00125 * 180.02562 * 7 2 1 9 9 N 1.36946 * 119.99772 * 0.02562 * 7 2 1 10 10 C 1.47146 * 125.57760 * 359.97268 * 9 7 2 11 11 C 1.54634 * 107.37595 * 179.10660 * 10 9 7 12 12 C 1.53520 * 102.70054 * 339.38901 * 11 10 9 13 13 C 1.51780 * 116.99856 * 164.16664 * 12 11 10 14 14 N 1.47393 * 87.52305 * 92.92534 * 13 12 11 15 15 C 1.34775 * 135.85513 * 205.66641 * 14 13 12 16 16 O 1.21647 * 119.99952 * 359.97438 * 15 14 13 17 17 C 1.47277 * 119.99783 * 179.97438 * 15 14 13 18 18 C 1.38439 * 120.02590 * 179.97438 * 17 15 14 19 19 C 1.40655 * 118.27029 * 180.02562 * 18 17 15 20 20 C 1.38262 * 133.40472 * 179.68082 * 19 18 17 21 21 C 1.39671 * 106.99934 * 179.97438 * 20 19 18 22 22 C 1.35650 * 108.08347 * 0.35162 * 21 20 19 23 23 N 1.35918 * 109.05731 * 359.78129 * 22 21 20 24 24 C 1.36895 * 132.42191 * 179.97438 * 23 22 21 25 25 N 1.29798 * 121.47718 * 180.02562 * 24 23 22 26 26 C 1.47397 * 88.29042 * 25.91808 * 14 13 12 27 27 C 1.47751 * 125.57764 * 179.97438 * 9 7 2 28 28 H 0.96995 * 119.99496 * 0.02562 * 1 2 3 29 29 H 1.08999 * 109.86505 * 59.66199 * 10 9 7 30 30 H 1.08992 * 109.86738 * 298.56149 * 10 9 7 31 31 H 1.08990 * 110.76684 * 221.08575 * 11 10 9 32 32 H 1.08992 * 110.76209 * 97.68387 * 11 10 9 33 33 H 1.09002 * 113.54698 * 338.26065 * 13 12 11 34 34 H 1.09005 * 113.60598 * 207.59331 * 13 12 11 35 35 H 1.07998 * 120.86624 * 359.97438 * 18 17 15 36 36 H 1.08001 * 126.49734 * 359.97438 * 20 19 18 37 37 H 1.08004 * 125.95949 * 180.13064 * 21 20 19 38 38 H 1.07998 * 125.47090 * 179.74180 * 22 21 20 39 39 H 1.08000 * 119.26598 * 0.05398 * 24 23 22 40 40 H 1.08995 * 113.54305 * 88.74473 * 26 14 13 41 41 H 1.09001 * 113.53776 * 219.42453 * 26 14 13 42 42 H 1.09007 * 110.39977 * 83.48681 * 27 9 7 43 43 H 1.08998 * 110.41328 * 321.06215 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6963 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 -0.1390 -2.5311 0.0006 11 6 -0.4552 -4.0446 -0.0225 12 6 0.8471 -4.6534 -0.5612 13 6 1.0378 -6.1476 -0.3752 14 7 0.4462 -6.3250 -1.7135 15 6 -0.2201 -7.3059 -2.3541 16 8 -0.4498 -8.3567 -1.7859 17 6 -0.6701 -7.1055 -3.7420 18 6 -1.3541 -8.1128 -4.4008 19 6 -1.7662 -7.8822 -5.7257 20 6 -2.4449 -8.6469 -6.6563 21 6 -2.5643 -7.8723 -7.8124 22 6 -1.9653 -6.6772 -7.5822 23 7 -1.4727 -6.6644 -6.3155 24 6 -0.7920 -5.7171 -5.5990 25 7 -0.4141 -5.9341 -4.3763 26 6 0.9058 -4.9652 -2.0485 27 6 1.9364 -3.7335 0.0005 28 1 -0.4849 0.8400 -0.0004 29 1 -0.5579 -2.0518 -0.8842 30 1 -0.5552 -2.0794 0.9009 31 1 -1.2871 -4.2554 -0.6943 32 1 -0.6660 -4.4106 0.9823 33 1 0.4319 -6.5673 0.4278 34 1 2.0834 -6.4504 -0.3179 35 1 -1.5650 -9.0517 -3.9105 36 1 -2.8128 -9.6526 -6.5160 37 1 -3.0462 -8.1737 -8.7308 38 1 -1.8910 -5.8664 -8.2918 39 1 -0.5646 -4.7679 -6.0611 40 1 1.9147 -4.9357 -2.4600 41 1 0.1896 -4.3976 -2.6426 42 1 2.1990 -4.0315 1.0156 43 1 2.8171 -3.7511 -0.6415 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001072845642.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:56:50 Heat of formation + Delta-G solvation = 131.618672 kcal Electronic energy + Delta-G solvation = -27086.602239 eV Core-core repulsion = 23328.653590 eV Total energy + Delta-G solvation = -3757.948649 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.64178 -40.60971 -38.66146 -37.39295 -35.64576 -33.37900 -32.22107 -31.28297 -29.80753 -28.94544 -28.22314 -25.96545 -25.82095 -24.54193 -23.89180 -22.92843 -21.44622 -20.29635 -19.92355 -18.60326 -18.25327 -17.28453 -16.70855 -16.35279 -16.09882 -15.94566 -15.41549 -15.34200 -14.77709 -14.59905 -14.35541 -13.83766 -13.70259 -13.37161 -12.91925 -12.78618 -12.70664 -12.49863 -12.36976 -12.17960 -11.89983 -11.77227 -11.01331 -10.91733 -10.87746 -10.73060 -10.54348 -10.38980 -10.20746 -10.12778 -9.87033 -9.61948 -9.58161 -9.27363 -8.59240 -8.54204 -7.78796 -6.82976 -5.70750 -3.04266 0.17176 0.91598 2.25651 2.54029 2.61171 2.86646 3.40302 3.44793 3.45913 3.55626 3.71795 4.21923 4.31096 4.47882 4.51921 4.68999 4.86676 4.91752 5.03384 5.14319 5.24779 5.30143 5.37488 5.50358 5.58989 5.69052 5.71668 5.78231 5.81688 5.88015 5.95007 6.17663 6.24397 6.26515 6.27695 6.38922 6.48985 6.56100 6.70164 6.73511 6.78415 7.39294 7.56025 7.63560 7.81337 7.83423 8.18531 8.25584 9.22017 9.82156 10.48214 11.40736 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.016623 B = 0.002981 C = 0.002640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1683.978097 B = 9391.364655 C =10603.521465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.008 4.008 3 Si 0.911 3.089 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.285 1.285 7 C -0.227 4.227 8 H 0.077 0.923 9 N -0.604 5.604 10 C 0.181 3.819 11 C -0.116 4.116 12 C -0.110 4.110 13 C 0.120 3.880 14 N -0.623 5.623 15 C 0.602 3.398 16 O -0.548 6.548 17 C 0.020 3.980 18 C -0.044 4.044 19 C 0.026 3.974 20 C -0.174 4.174 21 C -0.148 4.148 22 C -0.027 4.027 23 N -0.388 5.388 24 C 0.308 3.692 25 N -0.457 5.457 26 C 0.136 3.864 27 C 0.154 3.846 28 H 0.252 0.748 29 H 0.046 0.954 30 H 0.043 0.957 31 H 0.059 0.941 32 H 0.062 0.938 33 H 0.078 0.922 34 H 0.086 0.914 35 H 0.162 0.838 36 H 0.151 0.849 37 H 0.152 0.848 38 H 0.177 0.823 39 H 0.210 0.790 40 H 0.083 0.917 41 H 0.091 0.909 42 H 0.026 0.974 43 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.477 -14.760 -14.344 20.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.204 4.204 3 Si 0.742 3.258 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.356 4.356 8 H 0.095 0.905 9 N -0.331 5.331 10 C 0.056 3.944 11 C -0.154 4.154 12 C -0.111 4.111 13 C -0.003 4.003 14 N -0.355 5.355 15 C 0.391 3.609 16 O -0.427 6.427 17 C -0.097 4.097 18 C -0.066 4.066 19 C -0.079 4.079 20 C -0.199 4.199 21 C -0.170 4.170 22 C -0.158 4.158 23 N -0.060 5.060 24 C 0.025 3.975 25 N -0.169 5.169 26 C 0.014 3.986 27 C 0.028 3.972 28 H 0.063 0.937 29 H 0.065 0.935 30 H 0.061 0.939 31 H 0.078 0.922 32 H 0.081 0.919 33 H 0.097 0.903 34 H 0.104 0.896 35 H 0.180 0.820 36 H 0.169 0.831 37 H 0.169 0.831 38 H 0.194 0.806 39 H 0.226 0.774 40 H 0.101 0.899 41 H 0.110 0.890 42 H 0.044 0.956 43 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -3.168 -14.496 -13.391 19.987 hybrid contribution 0.032 0.392 -0.564 0.688 sum -3.136 -14.104 -13.955 20.088 Atomic orbital electron populations 1.69955 1.04861 1.25090 1.57048 1.24792 0.95695 0.97616 1.02319 0.86210 0.78437 0.83284 0.77875 1.21207 1.21675 1.21212 1.19001 0.90388 0.82352 1.43814 0.90472 1.44528 1.01596 0.99656 1.87286 1.21204 0.84227 0.87825 1.01099 1.22450 0.94264 0.99225 0.99510 1.22246 0.99877 0.93161 0.95860 1.22844 0.98379 0.94530 0.84538 1.49553 1.53038 1.16349 1.16580 1.16859 0.78335 0.82016 0.83650 1.90806 1.58924 1.25973 1.67005 1.20760 1.02832 0.90715 0.95431 1.21653 0.93724 1.00435 0.90811 1.18890 1.06891 0.87592 0.94491 1.21147 1.05402 1.00641 0.92744 1.21054 1.03097 0.93460 0.99427 1.22017 1.06205 1.01986 0.85628 1.43237 1.37458 1.13053 1.12270 1.24940 0.90979 0.93726 0.87833 1.68365 1.20300 1.21369 1.06858 1.22845 1.00078 0.79198 0.96513 1.21122 0.93208 0.85725 0.97180 0.93746 0.93549 0.93877 0.92219 0.91910 0.90344 0.89601 0.82027 0.83138 0.83066 0.80598 0.77422 0.89894 0.89042 0.95628 0.93953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.61 10.30 55.49 0.57 -26.04 16 2 C -0.01 -0.22 5.49 -17.43 -0.10 -0.32 16 3 Si 0.91 21.69 29.55 -169.99 -5.02 16.66 16 4 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.23 -6.14 10.28 -15.05 -0.15 -6.30 16 8 H 0.08 2.00 7.83 -52.49 -0.41 1.59 16 9 N -0.60 -14.83 3.41 -170.55 -0.58 -15.41 16 10 C 0.18 4.29 5.39 -2.83 -0.02 4.27 16 11 C -0.12 -2.17 6.41 -25.60 -0.16 -2.33 16 12 C -0.11 -1.85 1.06 -155.22 -0.16 -2.01 16 13 C 0.12 1.78 8.03 -7.48 -0.06 1.72 16 14 N -0.62 -9.95 3.70 -187.02 -0.69 -10.64 16 15 C 0.60 10.06 8.03 -12.59 -0.10 9.96 16 16 O -0.55 -10.31 17.11 5.24 0.09 -10.22 16 17 C 0.02 0.30 6.78 -82.43 -0.56 -0.26 16 18 C -0.04 -0.56 9.72 -38.60 -0.38 -0.93 16 19 C 0.03 0.30 6.78 -83.95 -0.57 -0.27 16 20 C -0.17 -1.59 10.98 -39.04 -0.43 -2.02 16 21 C -0.15 -1.12 10.80 -39.97 -0.43 -1.55 16 22 C -0.03 -0.20 11.61 -16.67 -0.19 -0.40 16 23 N -0.39 -3.89 2.95 -62.17 -0.18 -4.07 16 24 C 0.31 3.11 12.16 -89.24 -1.09 2.03 16 25 N -0.46 -6.06 8.04 -10.43 -0.08 -6.14 16 26 C 0.14 2.14 6.81 -7.32 -0.05 2.09 16 27 C 0.15 2.99 6.70 -3.23 -0.02 2.97 16 28 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 29 H 0.05 1.22 7.39 -51.93 -0.38 0.83 16 30 H 0.04 1.14 7.49 -51.93 -0.39 0.75 16 31 H 0.06 1.09 8.07 -51.93 -0.42 0.67 16 32 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 33 H 0.08 1.16 8.13 -51.93 -0.42 0.73 16 34 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.16 1.89 7.66 -52.49 -0.40 1.49 16 36 H 0.15 1.08 8.06 -52.49 -0.42 0.66 16 37 H 0.15 0.73 8.06 -52.48 -0.42 0.31 16 38 H 0.18 0.73 8.06 -52.49 -0.42 0.31 16 39 H 0.21 1.28 8.06 -52.49 -0.42 0.85 16 40 H 0.08 1.23 8.06 -51.93 -0.42 0.81 16 41 H 0.09 1.53 7.17 -51.93 -0.37 1.16 16 42 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.04 0.78 8.00 -51.93 -0.42 0.37 16 LS Contribution 358.18 15.07 5.40 5.40 Total: -1.00 -33.54 358.18 -10.70 -44.24 By element: Atomic # 1 Polarization: 5.30 SS G_CDS: -5.73 Total: -0.43 kcal Atomic # 6 Polarization: 11.12 SS G_CDS: -4.47 Total: 6.65 kcal Atomic # 7 Polarization: -61.33 SS G_CDS: -0.97 Total: -62.30 kcal Atomic # 8 Polarization: -10.31 SS G_CDS: 0.09 Total: -10.22 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -33.54 -10.70 -44.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072845642.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 175.856 kcal (2) G-P(sol) polarization free energy of solvation -33.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 142.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.238 kcal (6) G-S(sol) free energy of system = (1) + (5) 131.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds