Wall clock time and date at job start Tue Mar 31 2020 14:56:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86801 * 120.00425 * 2 1 4 4 H 1.48499 * 109.47168 * 240.00096 * 3 2 1 5 5 H 1.48502 * 109.46583 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47321 * 119.99830 * 3 2 1 7 7 C 1.38817 * 120.00071 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00125 * 180.02562 * 7 2 1 9 9 N 1.36946 * 119.99772 * 0.02562 * 7 2 1 10 10 C 1.47146 * 125.57760 * 359.97268 * 9 7 2 11 11 C 1.54634 * 107.37595 * 179.10660 * 10 9 7 12 12 C 1.53520 * 102.70054 * 339.38901 * 11 10 9 13 13 C 1.51780 * 116.99856 * 164.16664 * 12 11 10 14 14 N 1.47393 * 87.52305 * 92.92534 * 13 12 11 15 15 C 1.34775 * 135.85513 * 205.66641 * 14 13 12 16 16 O 1.21647 * 119.99952 * 359.97438 * 15 14 13 17 17 C 1.47277 * 119.99783 * 179.97438 * 15 14 13 18 18 C 1.38439 * 120.02590 * 179.97438 * 17 15 14 19 19 C 1.40655 * 118.27029 * 180.02562 * 18 17 15 20 20 C 1.38262 * 133.40472 * 179.68082 * 19 18 17 21 21 C 1.39671 * 106.99934 * 179.97438 * 20 19 18 22 22 C 1.35650 * 108.08347 * 0.35162 * 21 20 19 23 23 N 1.35918 * 109.05731 * 359.78129 * 22 21 20 24 24 C 1.36895 * 132.42191 * 179.97438 * 23 22 21 25 25 N 1.29798 * 121.47718 * 180.02562 * 24 23 22 26 26 C 1.47397 * 88.29042 * 25.91808 * 14 13 12 27 27 C 1.47751 * 125.57764 * 179.97438 * 9 7 2 28 28 H 0.96995 * 119.99496 * 0.02562 * 1 2 3 29 29 H 1.08999 * 109.86505 * 59.66199 * 10 9 7 30 30 H 1.08992 * 109.86738 * 298.56149 * 10 9 7 31 31 H 1.08990 * 110.76684 * 221.08575 * 11 10 9 32 32 H 1.08992 * 110.76209 * 97.68387 * 11 10 9 33 33 H 1.09002 * 113.54698 * 338.26065 * 13 12 11 34 34 H 1.09005 * 113.60598 * 207.59331 * 13 12 11 35 35 H 1.07998 * 120.86624 * 359.97438 * 18 17 15 36 36 H 1.08001 * 126.49734 * 359.97438 * 20 19 18 37 37 H 1.08004 * 125.95949 * 180.13064 * 21 20 19 38 38 H 1.07998 * 125.47090 * 179.74180 * 22 21 20 39 39 H 1.08000 * 119.26598 * 0.05398 * 24 23 22 40 40 H 1.08995 * 113.54305 * 88.74473 * 26 14 13 41 41 H 1.09001 * 113.53776 * 219.42453 * 26 14 13 42 42 H 1.09007 * 110.39977 * 83.48681 * 27 9 7 43 43 H 1.08998 * 110.41328 * 321.06215 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6963 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 -0.1390 -2.5311 0.0006 11 6 -0.4552 -4.0446 -0.0225 12 6 0.8471 -4.6534 -0.5612 13 6 1.0378 -6.1476 -0.3752 14 7 0.4462 -6.3250 -1.7135 15 6 -0.2201 -7.3059 -2.3541 16 8 -0.4498 -8.3567 -1.7859 17 6 -0.6701 -7.1055 -3.7420 18 6 -1.3541 -8.1128 -4.4008 19 6 -1.7662 -7.8822 -5.7257 20 6 -2.4449 -8.6469 -6.6563 21 6 -2.5643 -7.8723 -7.8124 22 6 -1.9653 -6.6772 -7.5822 23 7 -1.4727 -6.6644 -6.3155 24 6 -0.7920 -5.7171 -5.5990 25 7 -0.4141 -5.9341 -4.3763 26 6 0.9058 -4.9652 -2.0485 27 6 1.9364 -3.7335 0.0005 28 1 -0.4849 0.8400 -0.0004 29 1 -0.5579 -2.0518 -0.8842 30 1 -0.5552 -2.0794 0.9009 31 1 -1.2871 -4.2554 -0.6943 32 1 -0.6660 -4.4106 0.9823 33 1 0.4319 -6.5673 0.4278 34 1 2.0834 -6.4504 -0.3179 35 1 -1.5650 -9.0517 -3.9105 36 1 -2.8128 -9.6526 -6.5160 37 1 -3.0462 -8.1737 -8.7308 38 1 -1.8910 -5.8664 -8.2918 39 1 -0.5646 -4.7679 -6.0611 40 1 1.9147 -4.9357 -2.4600 41 1 0.1896 -4.3976 -2.6426 42 1 2.1990 -4.0315 1.0156 43 1 2.8171 -3.7511 -0.6415 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001072845642.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:56:50 Heat of formation + Delta-G solvation = 113.030088 kcal Electronic energy + Delta-G solvation = -27087.408301 eV Core-core repulsion = 23328.653590 eV Total energy + Delta-G solvation = -3758.754711 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.36150 -41.91689 -39.87323 -38.32925 -37.32097 -34.19900 -34.07459 -32.08142 -31.31946 -30.48299 -29.28953 -27.44657 -27.13549 -25.77217 -25.13185 -23.94394 -22.15776 -22.09083 -20.99976 -19.82779 -19.36964 -18.56320 -18.28148 -17.45770 -17.02556 -16.90311 -16.72090 -16.47590 -16.29645 -15.91925 -15.59927 -15.27206 -14.99894 -14.45640 -14.17112 -13.84883 -13.72139 -13.59960 -13.50583 -13.33671 -13.32468 -13.27108 -12.86947 -12.70970 -12.26215 -12.05766 -11.97651 -11.82925 -11.71957 -11.70968 -11.54244 -11.23049 -10.85081 -10.64347 -9.93620 -9.80503 -8.83746 -8.56765 -7.79070 -5.14090 -0.69841 0.16835 1.50118 1.52963 1.54265 1.58467 1.58993 1.70854 1.95003 2.54069 2.59304 2.84909 3.22467 3.37533 3.47104 3.59113 3.60691 3.82948 3.86974 4.02239 4.05433 4.21759 4.22984 4.34361 4.46336 4.54282 4.58424 4.60979 4.65469 4.74424 4.85922 4.89133 4.96180 5.03303 5.14543 5.17743 5.21069 5.22295 5.51205 5.51774 5.68567 5.73746 5.80489 6.15847 6.23767 6.56434 6.57223 6.99707 7.15089 7.82615 8.47583 9.31325 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.016623 B = 0.002981 C = 0.002640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1683.978097 B = 9391.364655 C =10603.521465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C -0.068 4.068 3 Si 0.977 3.023 4 H -0.275 1.275 5 H -0.299 1.299 6 H -0.279 1.279 7 C -0.236 4.236 8 H 0.087 0.913 9 N -0.624 5.624 10 C 0.194 3.806 11 C -0.101 4.101 12 C -0.103 4.103 13 C 0.126 3.874 14 N -0.626 5.626 15 C 0.598 3.402 16 O -0.581 6.581 17 C -0.017 4.017 18 C -0.036 4.036 19 C -0.018 4.018 20 C -0.162 4.162 21 C -0.155 4.155 22 C -0.006 4.006 23 N -0.398 5.398 24 C 0.316 3.684 25 N -0.487 5.487 26 C 0.146 3.854 27 C 0.154 3.846 28 H 0.245 0.755 29 H 0.012 0.988 30 H 0.005 0.995 31 H 0.062 0.938 32 H 0.074 0.926 33 H 0.081 0.919 34 H 0.111 0.889 35 H 0.159 0.841 36 H 0.166 0.834 37 H 0.183 0.817 38 H 0.215 0.785 39 H 0.246 0.754 40 H 0.097 0.903 41 H 0.080 0.920 42 H 0.036 0.964 43 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.818 -15.427 -16.868 23.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.603 5.603 2 C -0.260 4.260 3 Si 0.805 3.195 4 H -0.201 1.201 5 H -0.225 1.225 6 H -0.205 1.205 7 C -0.365 4.365 8 H 0.105 0.895 9 N -0.351 5.351 10 C 0.068 3.932 11 C -0.139 4.139 12 C -0.105 4.105 13 C 0.004 3.996 14 N -0.357 5.357 15 C 0.389 3.611 16 O -0.463 6.463 17 C -0.133 4.133 18 C -0.059 4.059 19 C -0.121 4.121 20 C -0.189 4.189 21 C -0.177 4.177 22 C -0.138 4.138 23 N -0.072 5.072 24 C 0.033 3.967 25 N -0.200 5.200 26 C 0.024 3.976 27 C 0.028 3.972 28 H 0.054 0.946 29 H 0.030 0.970 30 H 0.023 0.977 31 H 0.080 0.920 32 H 0.092 0.908 33 H 0.099 0.901 34 H 0.129 0.871 35 H 0.177 0.823 36 H 0.183 0.817 37 H 0.200 0.800 38 H 0.232 0.768 39 H 0.262 0.738 40 H 0.115 0.885 41 H 0.098 0.902 42 H 0.054 0.946 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -2.473 -15.198 -15.901 22.134 hybrid contribution -0.261 0.530 0.015 0.591 sum -2.735 -14.668 -15.885 21.794 Atomic orbital electron populations 1.70188 1.06327 1.25128 1.58624 1.25623 0.96518 1.00956 1.02952 0.85176 0.77073 0.78978 0.78243 1.20079 1.22520 1.20508 1.19437 0.91095 0.83489 1.42434 0.89542 1.44806 1.02079 1.01087 1.87085 1.20869 0.84054 0.90643 0.97600 1.22233 0.95503 0.95714 1.00494 1.22062 0.97543 0.94086 0.96767 1.22880 0.99921 0.92397 0.84407 1.49550 1.53060 1.16253 1.16885 1.17245 0.77750 0.81538 0.84559 1.90763 1.60281 1.27119 1.68124 1.20459 1.05654 0.92279 0.94867 1.21698 0.92738 0.99820 0.91632 1.19028 1.09333 0.89162 0.94583 1.21603 1.03331 1.01201 0.92746 1.21530 1.03074 0.93123 0.99949 1.22854 1.03266 1.02843 0.84787 1.43420 1.38017 1.12671 1.13063 1.25603 0.89451 0.94576 0.87058 1.68263 1.22128 1.21117 1.08484 1.22759 1.00503 0.78988 0.95374 1.21281 0.94126 0.83647 0.98126 0.94617 0.97018 0.97691 0.91958 0.90785 0.90060 0.87064 0.82329 0.81659 0.79994 0.76787 0.73826 0.88481 0.90186 0.94589 0.92499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.99 10.30 21.65 0.22 -56.77 16 2 C -0.07 -3.80 5.49 84.86 0.47 -3.33 16 3 Si 0.98 45.00 29.55 68.60 2.03 47.03 16 4 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 5 H -0.30 -14.02 7.11 99.48 0.71 -13.31 16 6 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 7 C -0.24 -12.78 10.28 84.03 0.86 -11.92 16 8 H 0.09 4.41 7.83 -2.91 -0.02 4.39 16 9 N -0.62 -30.93 3.41 -693.48 -2.36 -33.29 16 10 C 0.19 9.52 5.39 86.81 0.47 9.99 16 11 C -0.10 -3.82 6.41 31.33 0.20 -3.62 16 12 C -0.10 -3.38 1.06 -52.62 -0.06 -3.44 16 13 C 0.13 3.57 8.03 83.67 0.67 4.24 16 14 N -0.63 -19.76 3.70 -863.86 -3.19 -22.96 16 15 C 0.60 20.37 8.03 86.62 0.70 21.06 16 16 O -0.58 -22.44 17.11 -4.18 -0.07 -22.51 16 17 C -0.02 -0.49 6.78 40.98 0.28 -0.21 16 18 C -0.04 -0.94 9.72 22.91 0.22 -0.72 16 19 C -0.02 -0.38 6.78 38.69 0.26 -0.12 16 20 C -0.16 -2.61 10.98 22.62 0.25 -2.36 16 21 C -0.15 -1.74 10.80 22.02 0.24 -1.50 16 22 C -0.01 -0.07 11.61 83.46 0.97 0.90 16 23 N -0.40 -7.10 2.95 -350.60 -1.04 -8.14 16 24 C 0.32 5.89 12.16 179.86 2.19 8.07 16 25 N -0.49 -12.81 8.04 -186.90 -1.50 -14.32 16 26 C 0.15 4.51 6.81 83.76 0.57 5.08 16 27 C 0.15 5.78 6.70 86.22 0.58 6.35 16 28 H 0.24 14.34 8.31 -92.71 -0.77 13.57 16 29 H 0.01 0.64 7.39 -2.39 -0.02 0.62 16 30 H 0.00 0.27 7.49 -2.39 -0.02 0.25 16 31 H 0.06 2.31 8.07 -2.39 -0.02 2.29 16 32 H 0.07 2.62 8.14 -2.39 -0.02 2.60 16 33 H 0.08 2.29 8.13 -2.39 -0.02 2.27 16 34 H 0.11 2.63 8.14 -2.38 -0.02 2.61 16 35 H 0.16 3.92 7.66 -2.91 -0.02 3.90 16 36 H 0.17 2.01 8.06 -2.91 -0.02 1.99 16 37 H 0.18 0.88 8.06 -2.91 -0.02 0.86 16 38 H 0.22 0.60 8.06 -2.91 -0.02 0.58 16 39 H 0.25 2.31 8.06 -2.91 -0.02 2.29 16 40 H 0.10 2.73 8.06 -2.39 -0.02 2.71 16 41 H 0.08 2.69 7.17 -2.39 -0.02 2.67 16 42 H 0.04 1.31 8.14 -2.38 -0.02 1.29 16 43 H 0.06 1.99 8.00 -2.39 -0.02 1.97 16 Total: -1.00 -75.99 358.18 3.97 -72.02 By element: Atomic # 1 Polarization: 9.43 SS G_CDS: 1.02 Total: 10.46 kcal Atomic # 6 Polarization: 19.62 SS G_CDS: 8.86 Total: 28.48 kcal Atomic # 7 Polarization: -127.60 SS G_CDS: -7.87 Total: -135.48 kcal Atomic # 8 Polarization: -22.44 SS G_CDS: -0.07 Total: -22.51 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.03 kcal Total: -75.99 3.97 -72.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072845642.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 185.055 kcal (2) G-P(sol) polarization free energy of solvation -75.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.025 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds