Wall clock time and date at job start Tue Mar 31 2020 14:53:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86801 * 119.99746 * 2 1 4 4 H 1.48500 * 109.46968 * 270.00057 * 3 2 1 5 5 H 1.48502 * 109.47226 * 30.00087 * 3 2 1 6 6 H 1.48499 * 109.47209 * 149.99886 * 3 2 1 7 7 C 1.38813 * 120.00484 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99913 * 180.02562 * 7 2 1 9 9 N 1.36941 * 119.99642 * 0.02562 * 7 2 1 10 10 C 1.47134 * 125.58754 * 0.02562 * 9 7 2 11 11 C 1.54598 * 107.36678 * 180.66700 * 10 9 7 12 12 C 1.53662 * 102.73028 * 20.75555 * 11 10 9 13 13 C 1.52372 * 116.39802 * 197.08109 * 12 11 10 14 14 N 1.47893 * 85.58597 * 218.64914 * 13 12 11 15 15 C 1.34782 * 134.33854 * 203.48110 * 14 13 12 16 16 O 1.21791 * 119.99598 * 174.51041 * 15 14 13 17 17 C 1.41693 * 120.00037 * 354.51975 * 15 14 13 18 18 C 1.39187 * 125.87676 * 4.76307 * 17 15 14 19 19 C 1.38092 * 107.67492 * 179.83855 * 18 17 15 20 20 C 1.39501 * 107.56884 * 0.41831 * 19 18 17 21 21 C 1.40614 * 132.41246 * 179.71259 * 20 19 18 22 22 C 1.36299 * 119.16058 * 180.02562 * 21 20 19 23 23 C 1.39966 * 120.03841 * 359.97438 * 22 21 20 24 24 N 1.30649 * 120.98962 * 0.02691 * 23 22 21 25 25 N 1.37150 * 108.20479 * 359.74009 * 20 19 18 26 26 C 1.47886 * 91.31968 * 23.48761 * 14 13 12 27 27 C 1.47721 * 125.58333 * 179.71714 * 9 7 2 28 28 H 0.97002 * 120.00183 * 359.97438 * 1 2 3 29 29 H 1.09005 * 109.87191 * 300.11795 * 10 9 7 30 30 H 1.09001 * 109.86611 * 61.08583 * 10 9 7 31 31 H 1.09000 * 110.76066 * 139.06247 * 11 10 9 32 32 H 1.09003 * 110.76088 * 262.26484 * 11 10 9 33 33 H 1.09000 * 113.85539 * 332.81245 * 13 12 11 34 34 H 1.09000 * 113.85506 * 104.48295 * 13 12 11 35 35 H 1.07996 * 126.15978 * 359.95957 * 18 17 15 36 36 H 1.08006 * 126.21087 * 180.12236 * 19 18 17 37 37 H 1.08005 * 120.42570 * 0.02562 * 21 20 19 38 38 H 1.08002 * 119.98022 * 180.02562 * 22 21 20 39 39 H 1.07998 * 119.50892 * 179.97438 * 23 22 21 40 40 H 1.08999 * 113.85582 * 222.34789 * 26 14 13 41 41 H 1.09001 * 113.97067 * 90.69004 * 26 14 13 42 42 H 1.08997 * 110.40292 * 276.59452 * 27 9 7 43 43 H 1.09001 * 110.40131 * 39.01497 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4403 0.7001 7 6 2.0104 -1.2021 0.0005 8 1 3.0904 -1.2020 0.0010 9 7 1.3257 -2.3881 0.0005 10 6 -0.1386 -2.5313 -0.0005 11 6 -0.4542 -4.0447 0.0171 12 6 0.8477 -4.6558 0.5581 13 6 1.0387 -6.1508 0.3339 14 7 1.6267 -6.1632 1.6908 15 6 2.4868 -6.9748 2.3374 16 8 2.8817 -6.6803 3.4512 17 6 2.9317 -8.1707 1.7212 18 6 2.6355 -8.5789 0.4239 19 6 3.2617 -9.7914 0.2126 20 6 3.9339 -10.1285 1.3876 21 6 4.7221 -11.2369 1.7446 22 6 5.2614 -11.2932 2.9951 23 6 5.0287 -10.2560 3.9057 24 7 4.2970 -9.2245 3.5779 25 7 3.7244 -9.1290 2.3030 26 6 0.8954 -4.9308 2.0561 27 6 1.9364 -3.7331 -0.0049 28 1 -0.4850 0.8400 0.0004 29 1 -0.5582 -2.0551 0.8857 30 1 -0.5549 -2.0745 -0.8984 31 1 -1.2881 -4.2577 0.6859 32 1 -0.6655 -4.4070 -0.9890 33 1 0.1050 -6.7073 0.2530 34 1 1.7496 -6.3906 -0.4568 35 1 2.0273 -8.0429 -0.2896 36 1 3.2320 -10.3752 -0.6956 37 1 4.8980 -12.0337 1.0370 38 1 5.8692 -12.1382 3.2832 39 1 5.4599 -10.3096 4.8945 40 1 1.4938 -4.2130 2.6172 41 1 -0.0824 -5.1119 2.5024 42 1 2.1963 -4.0283 -1.0214 43 1 2.8187 -3.7524 0.6348 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001073040205.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:54 Heat of formation + Delta-G solvation = 155.282111 kcal Electronic energy + Delta-G solvation = -27135.154165 eV Core-core repulsion = 23378.231639 eV Total energy + Delta-G solvation = -3756.922526 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.19152 -40.42118 -38.23842 -37.24996 -35.55371 -33.52137 -32.26624 -30.95080 -29.86039 -29.11856 -28.01928 -26.38021 -25.85306 -24.58627 -23.81739 -22.81678 -21.49302 -20.29478 -19.87691 -18.39075 -17.76054 -17.37270 -16.85895 -16.44023 -16.03150 -15.77181 -15.60851 -15.09743 -14.74157 -14.38323 -14.05908 -13.70991 -13.62386 -13.44902 -13.25246 -12.73440 -12.58865 -12.41897 -12.25222 -12.13858 -11.80819 -11.70766 -11.06306 -11.00825 -10.89148 -10.74304 -10.70902 -10.36810 -10.19700 -10.05744 -9.81382 -9.64152 -9.48340 -9.15810 -8.56935 -8.50747 -7.95690 -6.80819 -5.68658 -3.01748 0.20015 0.75924 1.66455 2.11121 2.96535 2.98735 3.42955 3.48407 3.50227 3.51719 3.98632 4.18005 4.30467 4.49607 4.56760 4.63804 4.71859 4.93424 5.02915 5.05398 5.25790 5.34120 5.38046 5.50552 5.51574 5.56185 5.62977 5.72593 5.73653 5.78051 5.91544 6.02021 6.08899 6.21012 6.26270 6.39991 6.49474 6.51245 6.54887 6.71576 6.75805 7.39738 7.58674 7.63511 7.85409 7.87031 8.28195 8.34974 9.25097 9.84694 10.50005 11.43043 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.023845 B = 0.002681 C = 0.002581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.966453 B =10442.376299 C =10847.787586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.008 4.008 3 Si 0.911 3.089 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.226 4.226 8 H 0.077 0.923 9 N -0.604 5.604 10 C 0.178 3.822 11 C -0.131 4.131 12 C -0.103 4.103 13 C 0.109 3.891 14 N -0.633 5.633 15 C 0.599 3.401 16 O -0.535 6.535 17 C -0.009 4.009 18 C -0.117 4.117 19 C -0.168 4.168 20 C -0.004 4.004 21 C -0.016 4.016 22 C -0.199 4.199 23 C 0.121 3.879 24 N -0.241 5.241 25 N -0.220 5.220 26 C 0.136 3.864 27 C 0.161 3.839 28 H 0.252 0.748 29 H 0.046 0.954 30 H 0.044 0.956 31 H 0.064 0.936 32 H 0.065 0.935 33 H 0.089 0.911 34 H 0.086 0.914 35 H 0.168 0.832 36 H 0.156 0.844 37 H 0.155 0.845 38 H 0.149 0.851 39 H 0.195 0.805 40 H 0.087 0.913 41 H 0.084 0.916 42 H 0.025 0.975 43 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.932 -25.929 0.708 26.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.204 4.204 3 Si 0.742 3.258 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.354 4.354 8 H 0.095 0.905 9 N -0.331 5.331 10 C 0.053 3.947 11 C -0.170 4.170 12 C -0.105 4.105 13 C -0.014 4.014 14 N -0.368 5.368 15 C 0.390 3.610 16 O -0.413 6.413 17 C -0.127 4.127 18 C -0.142 4.142 19 C -0.194 4.194 20 C -0.115 4.115 21 C -0.043 4.043 22 C -0.222 4.222 23 C -0.072 4.072 24 N -0.049 5.049 25 N 0.019 4.981 26 C 0.014 3.986 27 C 0.035 3.965 28 H 0.062 0.938 29 H 0.065 0.935 30 H 0.063 0.937 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.107 0.893 34 H 0.105 0.895 35 H 0.186 0.814 36 H 0.174 0.826 37 H 0.173 0.827 38 H 0.167 0.833 39 H 0.211 0.789 40 H 0.106 0.894 41 H 0.102 0.898 42 H 0.043 0.957 43 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 4.975 -24.689 2.160 25.278 hybrid contribution 0.776 0.006 -0.358 0.855 sum 5.751 -24.683 1.802 25.408 Atomic orbital electron populations 1.69955 1.04826 1.24981 1.57269 1.24779 0.95724 0.97602 1.02317 0.86127 0.78643 0.83543 0.77517 1.21648 1.21699 1.20718 1.19049 0.90441 0.82359 1.43562 0.90514 1.44549 1.01640 0.99674 1.87239 1.21212 0.84245 0.87963 1.01251 1.22670 0.94676 0.99701 0.99926 1.22471 0.99701 0.93201 0.95123 1.23287 0.97633 0.96155 0.84335 1.49867 1.43656 1.27386 1.15939 1.15277 0.79538 0.81519 0.84665 1.90894 1.57105 1.73982 1.19299 1.19013 1.05254 0.94382 0.94085 1.21829 1.01740 0.96654 0.93932 1.21051 1.02790 0.98647 0.96939 1.19458 1.06546 0.93044 0.92472 1.20900 0.91676 0.95082 0.96649 1.21453 1.04875 1.01426 0.94461 1.24162 0.92660 0.89302 1.01094 1.76215 1.10878 1.22302 0.95492 1.45466 1.30962 1.14674 1.07025 1.22955 0.95512 0.83368 0.96753 1.21047 0.93179 0.85444 0.96810 0.93795 0.93540 0.93745 0.91725 0.91632 0.89266 0.89543 0.81446 0.82616 0.82736 0.83302 0.78856 0.89445 0.89760 0.95746 0.94134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.95 10.30 55.49 0.57 -26.38 16 2 C -0.01 -0.23 5.49 -17.43 -0.10 -0.33 16 3 Si 0.91 22.36 29.55 -169.99 -5.02 17.34 16 4 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 5 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 6 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 7 C -0.23 -6.32 10.28 -15.06 -0.15 -6.47 16 8 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 9 N -0.60 -15.19 3.41 -170.50 -0.58 -15.77 16 10 C 0.18 4.14 5.39 -2.86 -0.02 4.12 16 11 C -0.13 -2.19 6.36 -25.55 -0.16 -2.36 16 12 C -0.10 -1.68 0.99 -154.84 -0.15 -1.84 16 13 C 0.11 1.37 6.23 -3.60 -0.02 1.35 16 14 N -0.63 -10.14 3.62 -190.35 -0.69 -10.83 16 15 C 0.60 10.90 7.82 -14.94 -0.12 10.79 16 16 O -0.53 -11.81 17.21 5.11 0.09 -11.73 16 17 C -0.01 -0.15 6.84 -83.74 -0.57 -0.72 16 18 C -0.12 -1.38 9.84 -39.28 -0.39 -1.76 16 19 C -0.17 -1.68 10.92 -39.16 -0.43 -2.11 16 20 C 0.00 -0.04 6.80 -84.12 -0.57 -0.61 16 21 C -0.02 -0.12 10.11 -39.38 -0.40 -0.52 16 22 C -0.20 -1.30 10.04 -39.63 -0.40 -1.70 16 23 C 0.12 1.08 11.29 -17.41 -0.20 0.88 16 24 N -0.24 -3.50 11.32 30.61 0.35 -3.15 16 25 N -0.22 -3.28 4.01 -8.29 -0.03 -3.31 16 26 C 0.14 2.27 8.15 -3.60 -0.03 2.24 16 27 C 0.16 3.28 6.63 -3.16 -0.02 3.26 16 28 H 0.25 7.16 8.31 -40.82 -0.34 6.83 16 29 H 0.05 1.21 7.40 -51.93 -0.38 0.82 16 30 H 0.04 1.15 7.47 -51.93 -0.39 0.76 16 31 H 0.06 0.96 7.99 -51.93 -0.41 0.55 16 32 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 33 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.09 0.95 6.40 -51.93 -0.33 0.62 16 35 H 0.17 1.57 4.90 -52.49 -0.26 1.31 16 36 H 0.16 1.01 8.06 -52.48 -0.42 0.58 16 37 H 0.16 0.58 8.06 -52.48 -0.42 0.15 16 38 H 0.15 0.41 8.06 -52.49 -0.42 -0.01 16 39 H 0.19 0.95 8.06 -52.49 -0.42 0.52 16 40 H 0.09 1.69 8.12 -51.93 -0.42 1.27 16 41 H 0.08 1.25 8.04 -51.93 -0.42 0.83 16 42 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 43 H 0.04 0.87 8.07 -51.93 -0.42 0.46 16 LS Contribution 355.12 15.07 5.35 5.35 Total: -1.00 -37.37 355.12 -9.23 -46.60 By element: Atomic # 1 Polarization: 3.19 SS G_CDS: -5.54 Total: -2.35 kcal Atomic # 6 Polarization: 7.95 SS G_CDS: -3.72 Total: 4.23 kcal Atomic # 7 Polarization: -59.06 SS G_CDS: -0.38 Total: -59.44 kcal Atomic # 8 Polarization: -11.81 SS G_CDS: 0.09 Total: -11.73 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -37.37 -9.23 -46.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073040205.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 201.885 kcal (2) G-P(sol) polarization free energy of solvation -37.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 164.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.603 kcal (6) G-S(sol) free energy of system = (1) + (5) 155.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds