Wall clock time and date at job start Tue Mar 31 2020 14:53:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86801 * 119.99746 * 2 1 4 4 H 1.48500 * 109.46968 * 270.00057 * 3 2 1 5 5 H 1.48502 * 109.47226 * 30.00087 * 3 2 1 6 6 H 1.48499 * 109.47209 * 149.99886 * 3 2 1 7 7 C 1.38813 * 120.00484 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99913 * 180.02562 * 7 2 1 9 9 N 1.36941 * 119.99642 * 0.02562 * 7 2 1 10 10 C 1.47134 * 125.58754 * 0.02562 * 9 7 2 11 11 C 1.54598 * 107.36678 * 180.66700 * 10 9 7 12 12 C 1.53662 * 102.73028 * 20.75555 * 11 10 9 13 13 C 1.52372 * 116.39802 * 197.08109 * 12 11 10 14 14 N 1.47893 * 85.58597 * 218.64914 * 13 12 11 15 15 C 1.34782 * 134.33854 * 203.48110 * 14 13 12 16 16 O 1.21791 * 119.99598 * 174.51041 * 15 14 13 17 17 C 1.41693 * 120.00037 * 354.51975 * 15 14 13 18 18 C 1.39187 * 125.87676 * 4.76307 * 17 15 14 19 19 C 1.38092 * 107.67492 * 179.83855 * 18 17 15 20 20 C 1.39501 * 107.56884 * 0.41831 * 19 18 17 21 21 C 1.40614 * 132.41246 * 179.71259 * 20 19 18 22 22 C 1.36299 * 119.16058 * 180.02562 * 21 20 19 23 23 C 1.39966 * 120.03841 * 359.97438 * 22 21 20 24 24 N 1.30649 * 120.98962 * 0.02691 * 23 22 21 25 25 N 1.37150 * 108.20479 * 359.74009 * 20 19 18 26 26 C 1.47886 * 91.31968 * 23.48761 * 14 13 12 27 27 C 1.47721 * 125.58333 * 179.71714 * 9 7 2 28 28 H 0.97002 * 120.00183 * 359.97438 * 1 2 3 29 29 H 1.09005 * 109.87191 * 300.11795 * 10 9 7 30 30 H 1.09001 * 109.86611 * 61.08583 * 10 9 7 31 31 H 1.09000 * 110.76066 * 139.06247 * 11 10 9 32 32 H 1.09003 * 110.76088 * 262.26484 * 11 10 9 33 33 H 1.09000 * 113.85539 * 332.81245 * 13 12 11 34 34 H 1.09000 * 113.85506 * 104.48295 * 13 12 11 35 35 H 1.07996 * 126.15978 * 359.95957 * 18 17 15 36 36 H 1.08006 * 126.21087 * 180.12236 * 19 18 17 37 37 H 1.08005 * 120.42570 * 0.02562 * 21 20 19 38 38 H 1.08002 * 119.98022 * 180.02562 * 22 21 20 39 39 H 1.07998 * 119.50892 * 179.97438 * 23 22 21 40 40 H 1.08999 * 113.85582 * 222.34789 * 26 14 13 41 41 H 1.09001 * 113.97067 * 90.69004 * 26 14 13 42 42 H 1.08997 * 110.40292 * 276.59452 * 27 9 7 43 43 H 1.09001 * 110.40131 * 39.01497 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4403 0.7001 7 6 2.0104 -1.2021 0.0005 8 1 3.0904 -1.2020 0.0010 9 7 1.3257 -2.3881 0.0005 10 6 -0.1386 -2.5313 -0.0005 11 6 -0.4542 -4.0447 0.0171 12 6 0.8477 -4.6558 0.5581 13 6 1.0387 -6.1508 0.3339 14 7 1.6267 -6.1632 1.6908 15 6 2.4868 -6.9748 2.3374 16 8 2.8817 -6.6803 3.4512 17 6 2.9317 -8.1707 1.7212 18 6 2.6355 -8.5789 0.4239 19 6 3.2617 -9.7914 0.2126 20 6 3.9339 -10.1285 1.3876 21 6 4.7221 -11.2369 1.7446 22 6 5.2614 -11.2932 2.9951 23 6 5.0287 -10.2560 3.9057 24 7 4.2970 -9.2245 3.5779 25 7 3.7244 -9.1290 2.3030 26 6 0.8954 -4.9308 2.0561 27 6 1.9364 -3.7331 -0.0049 28 1 -0.4850 0.8400 0.0004 29 1 -0.5582 -2.0551 0.8857 30 1 -0.5549 -2.0745 -0.8984 31 1 -1.2881 -4.2577 0.6859 32 1 -0.6655 -4.4070 -0.9890 33 1 0.1050 -6.7073 0.2530 34 1 1.7496 -6.3906 -0.4568 35 1 2.0273 -8.0429 -0.2896 36 1 3.2320 -10.3752 -0.6956 37 1 4.8980 -12.0337 1.0370 38 1 5.8692 -12.1382 3.2832 39 1 5.4599 -10.3096 4.8945 40 1 1.4938 -4.2130 2.6172 41 1 -0.0824 -5.1119 2.5024 42 1 2.1963 -4.0283 -1.0214 43 1 2.8187 -3.7524 0.6348 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001073040205.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:53 Heat of formation + Delta-G solvation = 128.896900 kcal Electronic energy + Delta-G solvation = -27136.298313 eV Core-core repulsion = 23378.231639 eV Total energy + Delta-G solvation = -3758.066674 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.02325 -41.70090 -39.51457 -38.12406 -37.23827 -34.22540 -34.14648 -32.05680 -31.20794 -30.41807 -29.29621 -27.61681 -27.42142 -25.79034 -25.09183 -23.81595 -22.32036 -22.08474 -20.93138 -19.77265 -18.87222 -18.73524 -18.07532 -17.51073 -17.06461 -16.88102 -16.58263 -16.48935 -16.24008 -15.91568 -15.58426 -14.96480 -14.55627 -14.40105 -14.22163 -14.14217 -13.79664 -13.71914 -13.51683 -13.23702 -13.17275 -13.03446 -12.85606 -12.76930 -12.36949 -12.04286 -11.94213 -11.79095 -11.72866 -11.66584 -11.41624 -11.23931 -10.86375 -10.67084 -10.00459 -9.77284 -8.87121 -8.77791 -7.84743 -5.19046 -0.43426 -0.06177 0.87465 1.26997 1.43891 1.45682 1.54181 1.82810 2.26225 2.41806 2.48518 3.22168 3.28370 3.41119 3.58026 3.65061 3.68060 3.78666 3.85938 3.96065 4.14221 4.19436 4.31589 4.33842 4.48136 4.51552 4.64867 4.68034 4.74235 4.76893 4.85039 4.93517 4.99665 5.04164 5.09440 5.11180 5.16038 5.24002 5.26952 5.45307 5.66662 5.74505 5.75610 5.83344 6.22494 6.62447 6.66023 7.09121 7.12879 7.79194 8.42349 9.24936 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.023845 B = 0.002681 C = 0.002581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.966453 B =10442.376299 C =10847.787586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C -0.063 4.063 3 Si 0.974 3.026 4 H -0.282 1.282 5 H -0.293 1.293 6 H -0.276 1.276 7 C -0.242 4.242 8 H 0.073 0.927 9 N -0.627 5.627 10 C 0.182 3.818 11 C -0.109 4.109 12 C -0.095 4.095 13 C 0.128 3.872 14 N -0.635 5.635 15 C 0.592 3.408 16 O -0.598 6.598 17 C -0.072 4.072 18 C -0.104 4.104 19 C -0.166 4.166 20 C -0.008 4.008 21 C -0.021 4.021 22 C -0.185 4.185 23 C 0.125 3.875 24 N -0.317 5.317 25 N -0.239 5.239 26 C 0.128 3.872 27 C 0.159 3.841 28 H 0.247 0.753 29 H 0.007 0.993 30 H 0.012 0.988 31 H 0.091 0.909 32 H 0.096 0.904 33 H 0.133 0.867 34 H 0.110 0.890 35 H 0.191 0.809 36 H 0.197 0.803 37 H 0.201 0.799 38 H 0.197 0.803 39 H 0.226 0.774 40 H 0.045 0.955 41 H 0.107 0.893 42 H 0.042 0.958 43 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.594 -30.289 -1.232 30.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.256 4.256 3 Si 0.803 3.197 4 H -0.209 1.209 5 H -0.219 1.219 6 H -0.201 1.201 7 C -0.372 4.372 8 H 0.091 0.909 9 N -0.354 5.354 10 C 0.057 3.943 11 C -0.147 4.147 12 C -0.096 4.096 13 C 0.007 3.993 14 N -0.369 5.369 15 C 0.386 3.614 16 O -0.482 6.482 17 C -0.188 4.188 18 C -0.129 4.129 19 C -0.191 4.191 20 C -0.121 4.121 21 C -0.047 4.047 22 C -0.208 4.208 23 C -0.065 4.065 24 N -0.127 5.127 25 N -0.001 5.001 26 C 0.006 3.994 27 C 0.034 3.966 28 H 0.056 0.944 29 H 0.025 0.975 30 H 0.030 0.970 31 H 0.109 0.891 32 H 0.115 0.885 33 H 0.151 0.849 34 H 0.128 0.872 35 H 0.208 0.792 36 H 0.214 0.786 37 H 0.218 0.782 38 H 0.214 0.786 39 H 0.242 0.758 40 H 0.064 0.936 41 H 0.125 0.875 42 H 0.060 0.940 43 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges 5.629 -29.073 0.178 29.613 hybrid contribution 0.734 1.205 0.314 1.445 sum 6.363 -27.868 0.492 28.590 Atomic orbital electron populations 1.70169 1.05986 1.25190 1.58237 1.25569 0.96660 1.00694 1.02701 0.85145 0.77487 0.79499 0.77604 1.20879 1.21903 1.20143 1.19365 0.90710 0.84062 1.43016 0.90926 1.44848 1.02794 1.00672 1.87040 1.21028 0.83037 0.92431 0.97775 1.22526 0.95439 0.94275 1.02498 1.22274 0.97669 0.95223 0.94474 1.23508 0.99867 0.92831 0.83101 1.49892 1.43233 1.26563 1.17215 1.15790 0.79067 0.82410 0.84117 1.90830 1.59584 1.75655 1.22089 1.18935 1.09011 0.94803 0.96072 1.22125 1.01200 0.97161 0.92380 1.21550 1.01624 0.98141 0.97786 1.20336 1.06293 0.93177 0.92321 1.21543 0.90407 0.94790 0.97951 1.22014 1.03854 1.01455 0.93459 1.24968 0.90281 0.88430 1.02852 1.76154 1.14027 1.25684 0.96791 1.45628 1.31344 1.15426 1.07689 1.22982 0.95998 0.83521 0.96927 1.21175 0.93634 0.84448 0.97359 0.94365 0.97514 0.97009 0.89088 0.88516 0.84892 0.87170 0.79242 0.78582 0.78243 0.78594 0.75763 0.93624 0.87471 0.94011 0.96511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.60 10.30 21.65 0.22 -57.37 16 2 C -0.06 -3.69 5.49 84.86 0.47 -3.22 16 3 Si 0.97 47.36 29.55 68.60 2.03 49.39 16 4 H -0.28 -13.30 7.11 99.48 0.71 -12.60 16 5 H -0.29 -14.21 7.11 99.48 0.71 -13.51 16 6 H -0.28 -13.03 7.11 99.48 0.71 -12.33 16 7 C -0.24 -14.10 10.28 84.03 0.86 -13.24 16 8 H 0.07 4.15 7.83 -2.91 -0.02 4.12 16 9 N -0.63 -32.66 3.41 -693.33 -2.36 -35.02 16 10 C 0.18 8.73 5.39 86.80 0.47 9.20 16 11 C -0.11 -3.45 6.36 31.36 0.20 -3.25 16 12 C -0.09 -2.99 0.99 -52.15 -0.05 -3.04 16 13 C 0.13 2.84 6.23 85.90 0.54 3.37 16 14 N -0.63 -20.44 3.62 -874.31 -3.16 -23.60 16 15 C 0.59 22.62 7.82 85.09 0.67 23.29 16 16 O -0.60 -28.78 17.21 -4.64 -0.08 -28.86 16 17 C -0.07 -2.27 6.84 39.37 0.27 -2.00 16 18 C -0.10 -2.19 9.84 22.46 0.22 -1.97 16 19 C -0.17 -2.72 10.92 22.54 0.25 -2.47 16 20 C -0.01 -0.17 6.80 39.20 0.27 0.10 16 21 C -0.02 -0.22 10.11 22.40 0.23 0.00 16 22 C -0.19 -1.67 10.04 22.24 0.22 -1.45 16 23 C 0.13 2.06 11.29 85.29 0.96 3.02 16 24 N -0.32 -9.45 11.32 -57.06 -0.65 -10.10 16 25 N -0.24 -7.14 4.01 -180.13 -0.72 -7.86 16 26 C 0.13 4.40 8.15 85.91 0.70 5.10 16 27 C 0.16 6.56 6.63 86.28 0.57 7.13 16 28 H 0.25 14.60 8.31 -92.71 -0.77 13.83 16 29 H 0.01 0.36 7.40 -2.38 -0.02 0.34 16 30 H 0.01 0.63 7.47 -2.39 -0.02 0.61 16 31 H 0.09 2.46 7.99 -2.39 -0.02 2.44 16 32 H 0.10 2.53 8.14 -2.39 -0.02 2.51 16 33 H 0.13 1.94 8.14 -2.39 -0.02 1.92 16 34 H 0.11 1.98 6.40 -2.39 -0.02 1.97 16 35 H 0.19 2.79 4.90 -2.91 -0.01 2.77 16 36 H 0.20 1.44 8.06 -2.91 -0.02 1.41 16 37 H 0.20 0.23 8.06 -2.91 -0.02 0.21 16 38 H 0.20 -0.12 8.06 -2.91 -0.02 -0.15 16 39 H 0.23 1.76 8.06 -2.91 -0.02 1.74 16 40 H 0.05 1.93 8.12 -2.39 -0.02 1.91 16 41 H 0.11 3.16 8.04 -2.39 -0.02 3.14 16 42 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 43 H 0.02 0.76 8.07 -2.39 -0.02 0.74 16 Total: -1.00 -93.32 355.12 3.14 -90.18 By element: Atomic # 1 Polarization: 1.64 SS G_CDS: 1.03 Total: 2.67 kcal Atomic # 6 Polarization: 13.74 SS G_CDS: 6.83 Total: 20.57 kcal Atomic # 7 Polarization: -127.29 SS G_CDS: -6.67 Total: -133.96 kcal Atomic # 8 Polarization: -28.78 SS G_CDS: -0.08 Total: -28.86 kcal Atomic # 14 Polarization: 47.36 SS G_CDS: 2.03 Total: 49.39 kcal Total: -93.32 3.14 -90.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073040205.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 219.076 kcal (2) G-P(sol) polarization free energy of solvation -93.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.180 kcal (6) G-S(sol) free energy of system = (1) + (5) 128.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds