Wall clock time and date at job start Tue Mar 31 2020 15:09:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86800 * 119.99888 * 2 1 4 4 H 1.48504 * 109.46996 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47569 * 300.00298 * 3 2 1 6 6 H 1.48499 * 109.46938 * 60.00460 * 3 2 1 7 7 C 1.38813 * 120.00073 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99975 * 179.97438 * 7 2 1 9 9 N 1.36932 * 120.00064 * 359.97438 * 7 2 1 10 10 C 1.47154 * 125.58067 * 0.03304 * 9 7 2 11 11 C 1.54631 * 107.37831 * 179.03972 * 10 9 7 12 12 C 1.53512 * 102.70047 * 339.38431 * 11 10 9 13 13 C 1.51787 * 116.99796 * 164.16841 * 12 11 10 14 14 N 1.47382 * 87.52115 * 92.92541 * 13 12 11 15 15 C 1.34776 * 135.85716 * 205.66393 * 14 13 12 16 16 O 1.21593 * 119.99707 * 5.50082 * 15 14 13 17 17 C 1.47519 * 120.00508 * 185.49954 * 15 14 13 18 18 C 1.39446 * 120.24883 * 24.17631 * 17 15 14 19 19 C 1.38283 * 120.28311 * 180.02562 * 18 17 15 20 20 C 1.37869 * 120.72934 * 359.95249 * 19 18 17 21 21 C 1.39688 * 120.10676 * 0.04586 * 20 19 18 22 22 N 1.35856 * 133.50722 * 180.30122 * 21 20 19 23 23 C 1.30084 * 109.53581 * 180.12197 * 22 21 20 24 24 N 1.36129 * 110.04854 * 359.57292 * 23 22 21 25 25 H 0.96997 * 126.31005 * 180.26012 * 24 23 22 26 26 C 1.37512 * 107.38090 * 0.26461 * 24 23 22 27 27 C 1.47392 * 88.29254 * 25.92118 * 14 13 12 28 28 C 1.47750 * 125.58189 * 179.97438 * 9 7 2 29 29 H 0.97001 * 120.00503 * 359.97438 * 1 2 3 30 30 H 1.08998 * 109.86429 * 59.58881 * 10 9 7 31 31 H 1.08996 * 109.86112 * 298.48784 * 10 9 7 32 32 H 1.08999 * 110.75946 * 221.08240 * 11 10 9 33 33 H 1.08996 * 110.76301 * 97.68692 * 11 10 9 34 34 H 1.09004 * 113.54519 * 338.25877 * 13 12 11 35 35 H 1.09003 * 113.60447 * 207.60053 * 13 12 11 36 36 H 1.07994 * 119.85058 * 0.02562 * 18 17 15 37 37 H 1.08007 * 119.63078 * 179.97438 * 19 18 17 38 38 H 1.07999 * 119.94944 * 180.02562 * 20 19 18 39 39 H 1.08001 * 124.97592 * 179.83059 * 23 22 21 40 40 H 1.09003 * 113.54721 * 88.74631 * 27 14 13 41 41 H 1.09005 * 113.54270 * 219.41787 * 27 14 13 42 42 H 1.09005 * 110.40535 * 83.55102 * 28 9 7 43 43 H 1.09000 * 110.41191 * 321.13075 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8914 2.3964 1.2126 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 -0.1390 -2.5312 -0.0007 11 6 -0.4551 -4.0446 -0.0254 12 6 0.8472 -4.6527 -0.5648 13 6 1.0379 -6.1472 -0.3805 14 7 0.4463 -6.3230 -1.7189 15 6 -0.2200 -7.3032 -2.3606 16 8 -0.5377 -8.3139 -1.7639 17 6 -0.5638 -7.1499 -3.7870 18 6 0.1806 -6.2972 -4.6013 19 6 -0.1414 -6.1526 -5.9383 20 6 -1.1987 -6.8465 -6.4874 21 6 -1.9601 -7.7071 -5.6930 22 7 -3.0287 -8.5085 -5.9408 23 6 -3.3785 -9.1180 -4.8461 24 7 -2.5528 -8.7559 -3.8262 25 1 -2.5989 -9.0716 -2.9101 26 6 -1.6412 -7.8602 -4.3338 27 6 0.9059 -4.9629 -2.0524 28 6 1.9364 -3.7334 -0.0016 29 1 -0.4851 0.8400 0.0004 30 1 -0.5579 -2.0508 -0.8849 31 1 -0.5552 -2.0805 0.9002 32 1 -1.2871 -4.2546 -0.6975 33 1 -0.6660 -4.4117 0.9790 34 1 0.4321 -6.5678 0.4221 35 1 2.0835 -6.4500 -0.3234 36 1 1.0121 -5.7474 -4.1859 37 1 0.4420 -5.4889 -6.5594 38 1 -1.4388 -6.7244 -7.5332 39 1 -4.2008 -9.8128 -4.7600 40 1 1.9148 -4.9329 -2.4640 41 1 0.1897 -4.3946 -2.6459 42 1 2.1988 -4.0324 1.0132 43 1 2.8173 -3.7504 -0.6434 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001073071199.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:09:36 Heat of formation + Delta-G solvation = 111.861813 kcal Electronic energy + Delta-G solvation = -27302.547462 eV Core-core repulsion = 23543.742091 eV Total energy + Delta-G solvation = -3758.805371 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.36036 -40.76511 -38.48764 -37.16260 -35.74000 -33.29355 -32.30113 -30.78406 -29.71042 -29.30168 -28.60737 -26.14036 -25.93923 -24.22440 -23.39928 -22.48707 -21.98195 -20.37092 -19.74066 -18.60410 -17.95135 -17.58253 -16.76143 -16.53524 -16.07857 -15.71688 -15.39962 -15.24511 -14.81668 -14.45100 -14.36421 -13.90557 -13.86658 -13.58216 -13.14713 -12.62903 -12.40757 -12.19488 -12.10528 -11.98765 -11.95065 -11.86255 -11.06149 -10.96865 -10.92100 -10.73532 -10.58470 -10.42527 -10.24047 -10.11740 -9.92499 -9.73680 -9.65098 -8.75325 -8.65006 -8.61840 -8.36915 -6.89178 -5.75966 -3.09967 0.41719 1.28103 2.31175 2.72506 2.82396 2.96035 3.36869 3.42575 3.45044 3.69005 4.00307 4.22838 4.42618 4.54686 4.60816 4.73695 4.90006 5.02171 5.08814 5.12638 5.18146 5.40592 5.45433 5.50568 5.58421 5.60306 5.64146 5.76087 5.76188 5.82120 6.06057 6.10187 6.16676 6.18403 6.22221 6.39997 6.45586 6.55337 6.59505 6.64220 7.12116 7.50962 7.56136 7.59034 7.69652 7.77791 8.05458 8.19615 9.16512 9.76665 10.41793 11.35568 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.018910 B = 0.002969 C = 0.002784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1480.323899 B = 9427.990056 C =10054.248908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.007 4.007 3 Si 0.911 3.089 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.229 4.229 8 H 0.079 0.921 9 N -0.604 5.604 10 C 0.180 3.820 11 C -0.117 4.117 12 C -0.105 4.105 13 C 0.120 3.880 14 N -0.634 5.634 15 C 0.588 3.412 16 O -0.558 6.558 17 C -0.123 4.123 18 C -0.060 4.060 19 C -0.137 4.137 20 C -0.037 4.037 21 C 0.033 3.967 22 N -0.495 5.495 23 C 0.259 3.741 24 N -0.588 5.588 25 H 0.432 0.568 26 C 0.098 3.902 27 C 0.115 3.885 28 C 0.154 3.846 29 H 0.252 0.748 30 H 0.047 0.953 31 H 0.044 0.956 32 H 0.060 0.940 33 H 0.063 0.937 34 H 0.078 0.922 35 H 0.087 0.913 36 H 0.139 0.861 37 H 0.139 0.861 38 H 0.134 0.866 39 H 0.218 0.782 40 H 0.090 0.910 41 H 0.085 0.915 42 H 0.027 0.973 43 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.386 -16.020 -8.777 18.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.204 4.204 3 Si 0.742 3.258 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.357 4.357 8 H 0.097 0.903 9 N -0.331 5.331 10 C 0.055 3.945 11 C -0.155 4.155 12 C -0.106 4.106 13 C -0.003 4.003 14 N -0.367 5.367 15 C 0.379 3.621 16 O -0.439 6.439 17 C -0.129 4.129 18 C -0.080 4.080 19 C -0.157 4.157 20 C -0.057 4.057 21 C -0.085 4.085 22 N -0.214 5.214 23 C -0.028 4.028 24 N -0.199 5.199 25 H 0.273 0.727 26 C -0.016 4.016 27 C -0.007 4.007 28 C 0.027 3.973 29 H 0.062 0.938 30 H 0.065 0.935 31 H 0.062 0.938 32 H 0.078 0.922 33 H 0.082 0.918 34 H 0.097 0.903 35 H 0.105 0.895 36 H 0.157 0.843 37 H 0.156 0.844 38 H 0.152 0.848 39 H 0.235 0.765 40 H 0.108 0.892 41 H 0.104 0.896 42 H 0.045 0.955 43 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -3.101 -16.543 -9.409 19.283 hybrid contribution 0.710 0.762 1.236 1.616 sum -2.391 -15.781 -8.173 17.932 Atomic orbital electron populations 1.69965 1.04887 1.24975 1.56997 1.24800 0.95704 0.97685 1.02185 0.86057 0.78714 0.83797 0.77250 1.20499 1.21758 1.21794 1.19082 0.90453 0.82272 1.43864 0.90317 1.44545 1.01560 0.99669 1.87329 1.21225 0.84282 0.87754 1.01248 1.22468 0.94144 0.99292 0.99625 1.22193 1.00129 0.93358 0.94964 1.22820 0.98384 0.94433 0.84643 1.49677 1.54134 1.15994 1.16907 1.17671 0.77574 0.81309 0.85536 1.90710 1.55961 1.29008 1.68233 1.18766 0.98123 1.02467 0.93551 1.21384 0.98256 0.94654 0.93666 1.20884 0.98379 1.01391 0.95067 1.20473 0.92808 0.92959 0.99456 1.19043 0.97061 1.01245 0.91138 1.70506 1.13529 1.11351 1.26057 1.25436 0.96130 0.99194 0.82046 1.43235 1.25923 1.36950 1.13796 0.72709 1.18583 0.93491 0.94964 0.94527 1.23039 1.00062 0.79673 0.97898 1.21134 0.93125 0.85733 0.97297 0.93774 0.93451 0.93787 0.92173 0.91796 0.90334 0.89490 0.84332 0.84364 0.84773 0.76536 0.89175 0.89626 0.95531 0.93862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.12 10.30 55.49 0.57 -25.55 16 2 C -0.01 -0.20 5.49 -17.43 -0.10 -0.30 16 3 Si 0.91 21.35 29.55 -169.99 -5.02 16.33 16 4 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 7 C -0.23 -6.01 10.28 -15.06 -0.15 -6.17 16 8 H 0.08 2.00 7.83 -52.48 -0.41 1.59 16 9 N -0.60 -14.30 3.41 -170.53 -0.58 -14.88 16 10 C 0.18 4.10 5.39 -2.83 -0.02 4.09 16 11 C -0.12 -2.06 6.41 -25.61 -0.16 -2.22 16 12 C -0.10 -1.62 1.06 -155.22 -0.16 -1.78 16 13 C 0.12 1.61 8.03 -7.49 -0.06 1.55 16 14 N -0.63 -8.95 3.65 -186.98 -0.68 -9.63 16 15 C 0.59 8.96 7.85 -12.48 -0.10 8.86 16 16 O -0.56 -9.66 16.54 5.28 0.09 -9.57 16 17 C -0.12 -1.69 5.84 -104.94 -0.61 -2.30 16 18 C -0.06 -0.69 8.87 -39.12 -0.35 -1.03 16 19 C -0.14 -1.38 9.99 -39.70 -0.40 -1.77 16 20 C -0.04 -0.41 10.09 -39.18 -0.40 -0.81 16 21 C 0.03 0.44 7.22 -84.71 -0.61 -0.18 16 22 N -0.49 -6.24 11.28 -12.04 -0.14 -6.37 16 23 C 0.26 2.47 12.97 -89.72 -1.16 1.30 16 24 N -0.59 -6.56 6.04 -11.56 -0.07 -6.63 16 25 H 0.43 4.38 8.08 -40.82 -0.33 4.05 16 26 C 0.10 1.33 6.87 -83.77 -0.58 0.75 16 27 C 0.12 1.57 5.45 -7.34 -0.04 1.53 16 28 C 0.15 2.80 6.70 -3.22 -0.02 2.78 16 29 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 30 H 0.05 1.21 7.38 -51.93 -0.38 0.82 16 31 H 0.04 1.13 7.49 -51.93 -0.39 0.75 16 32 H 0.06 1.03 8.07 -51.93 -0.42 0.61 16 33 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.08 1.07 8.13 -51.93 -0.42 0.65 16 35 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.14 1.42 5.60 -52.49 -0.29 1.13 16 37 H 0.14 1.00 8.06 -52.48 -0.42 0.58 16 38 H 0.13 1.20 8.06 -52.49 -0.42 0.77 16 39 H 0.22 0.93 8.06 -52.49 -0.42 0.51 16 40 H 0.09 1.06 7.79 -51.93 -0.40 0.65 16 41 H 0.09 1.21 7.82 -51.93 -0.41 0.81 16 42 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 43 H 0.04 0.74 8.00 -51.93 -0.42 0.33 16 LS Contribution 353.70 15.07 5.33 5.33 Total: -1.00 -33.46 353.70 -10.97 -44.43 By element: Atomic # 1 Polarization: 7.80 SS G_CDS: -5.55 Total: 2.25 kcal Atomic # 6 Polarization: 9.21 SS G_CDS: -4.92 Total: 4.30 kcal Atomic # 7 Polarization: -62.17 SS G_CDS: -0.90 Total: -63.07 kcal Atomic # 8 Polarization: -9.66 SS G_CDS: 0.09 Total: -9.57 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -33.46 -10.97 -44.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073071199.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.294 kcal (2) G-P(sol) polarization free energy of solvation -33.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.432 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds