Wall clock time and date at job start Tue Mar 31 2020 15:09:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86800 * 119.99888 * 2 1 4 4 H 1.48504 * 109.46996 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47569 * 300.00298 * 3 2 1 6 6 H 1.48499 * 109.46938 * 60.00460 * 3 2 1 7 7 C 1.38813 * 120.00073 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99975 * 179.97438 * 7 2 1 9 9 N 1.36932 * 120.00064 * 359.97438 * 7 2 1 10 10 C 1.47154 * 125.58067 * 0.03304 * 9 7 2 11 11 C 1.54631 * 107.37831 * 179.03972 * 10 9 7 12 12 C 1.53512 * 102.70047 * 339.38431 * 11 10 9 13 13 C 1.51787 * 116.99796 * 164.16841 * 12 11 10 14 14 N 1.47382 * 87.52115 * 92.92541 * 13 12 11 15 15 C 1.34776 * 135.85716 * 205.66393 * 14 13 12 16 16 O 1.21593 * 119.99707 * 5.50082 * 15 14 13 17 17 C 1.47519 * 120.00508 * 185.49954 * 15 14 13 18 18 C 1.39446 * 120.24883 * 24.17631 * 17 15 14 19 19 C 1.38283 * 120.28311 * 180.02562 * 18 17 15 20 20 C 1.37869 * 120.72934 * 359.95249 * 19 18 17 21 21 C 1.39688 * 120.10676 * 0.04586 * 20 19 18 22 22 N 1.35856 * 133.50722 * 180.30122 * 21 20 19 23 23 C 1.30084 * 109.53581 * 180.12197 * 22 21 20 24 24 N 1.36129 * 110.04854 * 359.57292 * 23 22 21 25 25 H 0.96997 * 126.31005 * 180.26012 * 24 23 22 26 26 C 1.37512 * 107.38090 * 0.26461 * 24 23 22 27 27 C 1.47392 * 88.29254 * 25.92118 * 14 13 12 28 28 C 1.47750 * 125.58189 * 179.97438 * 9 7 2 29 29 H 0.97001 * 120.00503 * 359.97438 * 1 2 3 30 30 H 1.08998 * 109.86429 * 59.58881 * 10 9 7 31 31 H 1.08996 * 109.86112 * 298.48784 * 10 9 7 32 32 H 1.08999 * 110.75946 * 221.08240 * 11 10 9 33 33 H 1.08996 * 110.76301 * 97.68692 * 11 10 9 34 34 H 1.09004 * 113.54519 * 338.25877 * 13 12 11 35 35 H 1.09003 * 113.60447 * 207.60053 * 13 12 11 36 36 H 1.07994 * 119.85058 * 0.02562 * 18 17 15 37 37 H 1.08007 * 119.63078 * 179.97438 * 19 18 17 38 38 H 1.07999 * 119.94944 * 180.02562 * 20 19 18 39 39 H 1.08001 * 124.97592 * 179.83059 * 23 22 21 40 40 H 1.09003 * 113.54721 * 88.74631 * 27 14 13 41 41 H 1.09005 * 113.54270 * 219.41787 * 27 14 13 42 42 H 1.09005 * 110.40535 * 83.55102 * 28 9 7 43 43 H 1.09000 * 110.41191 * 321.13075 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8914 2.3964 1.2126 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 -0.1390 -2.5312 -0.0007 11 6 -0.4551 -4.0446 -0.0254 12 6 0.8472 -4.6527 -0.5648 13 6 1.0379 -6.1472 -0.3805 14 7 0.4463 -6.3230 -1.7189 15 6 -0.2200 -7.3032 -2.3606 16 8 -0.5377 -8.3139 -1.7639 17 6 -0.5638 -7.1499 -3.7870 18 6 0.1806 -6.2972 -4.6013 19 6 -0.1414 -6.1526 -5.9383 20 6 -1.1987 -6.8465 -6.4874 21 6 -1.9601 -7.7071 -5.6930 22 7 -3.0287 -8.5085 -5.9408 23 6 -3.3785 -9.1180 -4.8461 24 7 -2.5528 -8.7559 -3.8262 25 1 -2.5989 -9.0716 -2.9101 26 6 -1.6412 -7.8602 -4.3338 27 6 0.9059 -4.9629 -2.0524 28 6 1.9364 -3.7334 -0.0016 29 1 -0.4851 0.8400 0.0004 30 1 -0.5579 -2.0508 -0.8849 31 1 -0.5552 -2.0805 0.9002 32 1 -1.2871 -4.2546 -0.6975 33 1 -0.6660 -4.4117 0.9790 34 1 0.4321 -6.5678 0.4221 35 1 2.0835 -6.4500 -0.3234 36 1 1.0121 -5.7474 -4.1859 37 1 0.4420 -5.4889 -6.5594 38 1 -1.4388 -6.7244 -7.5332 39 1 -4.2008 -9.8128 -4.7600 40 1 1.9148 -4.9329 -2.4640 41 1 0.1897 -4.3946 -2.6459 42 1 2.1988 -4.0324 1.0132 43 1 2.8173 -3.7504 -0.6434 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001073071199.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:09:35 Heat of formation + Delta-G solvation = 91.164363 kcal Electronic energy + Delta-G solvation = -27303.444970 eV Core-core repulsion = 23543.742091 eV Total energy + Delta-G solvation = -3759.702880 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.20384 -41.95580 -39.68991 -38.05033 -37.32396 -34.21644 -34.03932 -31.90777 -30.95110 -30.49729 -29.94404 -27.49043 -27.21087 -25.74077 -24.50390 -23.35229 -22.85676 -22.13063 -20.83210 -19.87005 -18.91495 -18.64269 -18.43598 -17.50893 -17.16643 -16.82830 -16.67547 -16.26413 -16.18688 -15.92830 -15.57509 -15.24865 -14.86606 -14.63048 -14.31030 -14.10336 -13.73707 -13.72223 -13.34266 -13.07235 -12.94881 -12.84771 -12.80117 -12.77089 -12.27259 -11.96424 -11.93803 -11.82908 -11.79605 -11.69373 -11.38832 -11.21999 -10.85037 -10.66537 -9.85348 -9.49041 -9.25717 -8.83656 -7.79615 -5.14235 -0.46181 0.41661 1.40961 1.50771 1.51287 1.61183 1.67543 1.97672 2.02346 2.53922 2.79352 3.14205 3.28042 3.35552 3.45387 3.56415 3.77604 3.84136 3.93453 4.05229 4.19833 4.21754 4.27692 4.35851 4.44116 4.52341 4.59540 4.68732 4.70667 4.72521 4.84916 4.90690 4.96554 5.02801 5.16799 5.21089 5.23342 5.34586 5.38655 5.53126 5.68032 5.75384 5.81175 6.23880 6.34469 6.57992 6.77482 6.93613 7.15188 7.83026 8.47093 9.31013 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.018910 B = 0.002969 C = 0.002784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1480.323899 B = 9427.990056 C =10054.248908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C -0.068 4.068 3 Si 0.974 3.026 4 H -0.262 1.262 5 H -0.295 1.295 6 H -0.299 1.299 7 C -0.231 4.231 8 H 0.089 0.911 9 N -0.625 5.625 10 C 0.191 3.809 11 C -0.103 4.103 12 C -0.100 4.100 13 C 0.127 3.873 14 N -0.634 5.634 15 C 0.585 3.415 16 O -0.586 6.586 17 C -0.146 4.146 18 C -0.059 4.059 19 C -0.131 4.131 20 C -0.042 4.042 21 C 0.012 3.988 22 N -0.527 5.527 23 C 0.274 3.726 24 N -0.591 5.591 25 H 0.435 0.565 26 C 0.073 3.927 27 C 0.121 3.879 28 C 0.153 3.847 29 H 0.244 0.756 30 H 0.012 0.988 31 H 0.003 0.997 32 H 0.064 0.936 33 H 0.072 0.928 34 H 0.077 0.923 35 H 0.115 0.885 36 H 0.152 0.848 37 H 0.170 0.830 38 H 0.153 0.847 39 H 0.265 0.735 40 H 0.119 0.881 41 H 0.078 0.922 42 H 0.035 0.965 43 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.955 -17.209 -9.803 19.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.603 5.603 2 C -0.261 4.261 3 Si 0.803 3.197 4 H -0.186 1.186 5 H -0.222 1.222 6 H -0.226 1.226 7 C -0.360 4.360 8 H 0.107 0.893 9 N -0.351 5.351 10 C 0.066 3.934 11 C -0.141 4.141 12 C -0.102 4.102 13 C 0.005 3.995 14 N -0.366 5.366 15 C 0.378 3.622 16 O -0.469 6.469 17 C -0.152 4.152 18 C -0.079 4.079 19 C -0.151 4.151 20 C -0.062 4.062 21 C -0.106 4.106 22 N -0.247 5.247 23 C -0.013 4.013 24 N -0.202 5.202 25 H 0.276 0.724 26 C -0.041 4.041 27 C 0.000 4.000 28 C 0.027 3.973 29 H 0.053 0.947 30 H 0.030 0.970 31 H 0.021 0.979 32 H 0.082 0.918 33 H 0.091 0.909 34 H 0.096 0.904 35 H 0.133 0.867 36 H 0.169 0.831 37 H 0.188 0.812 38 H 0.171 0.829 39 H 0.281 0.719 40 H 0.137 0.863 41 H 0.097 0.903 42 H 0.053 0.947 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -1.629 -17.757 -10.432 20.658 hybrid contribution 0.246 1.087 1.559 1.916 sum -1.383 -16.670 -8.873 18.935 Atomic orbital electron populations 1.70190 1.06331 1.24931 1.58848 1.25598 0.96473 1.00922 1.03115 0.85068 0.78439 0.79843 0.76350 1.18643 1.22231 1.22632 1.19505 0.91138 0.83420 1.41948 0.89347 1.44822 1.02037 1.01192 1.87048 1.20889 0.84155 0.90786 0.97602 1.22244 0.95686 0.95594 1.00573 1.22005 0.97411 0.94251 0.96494 1.22857 0.99995 0.92170 0.84448 1.49632 1.53947 1.15897 1.17114 1.17924 0.77153 0.81003 0.86129 1.90682 1.57109 1.30111 1.69020 1.18822 0.99299 1.04096 0.93019 1.21619 0.98128 0.93978 0.94170 1.21235 0.98027 1.01087 0.94776 1.20841 0.92653 0.92361 1.00335 1.19456 0.97701 1.01996 0.91435 1.70513 1.14161 1.12574 1.27485 1.26399 0.95931 0.98223 0.80771 1.43348 1.25869 1.36726 1.14255 0.72406 1.18852 0.94262 0.95907 0.95110 1.23101 1.01425 0.79112 0.96397 1.21310 0.94250 0.83450 0.98260 0.94701 0.96966 0.97912 0.91768 0.90945 0.90412 0.86687 0.83088 0.81225 0.82924 0.71937 0.86346 0.90326 0.94735 0.91944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.03 10.30 21.65 0.22 -55.80 16 2 C -0.07 -3.75 5.49 84.86 0.47 -3.28 16 3 Si 0.97 44.23 29.55 68.60 2.03 46.26 16 4 H -0.26 -11.02 7.11 99.48 0.71 -10.31 16 5 H -0.30 -13.49 7.11 99.48 0.71 -12.78 16 6 H -0.30 -13.83 7.11 99.48 0.71 -13.12 16 7 C -0.23 -12.09 10.28 84.03 0.86 -11.23 16 8 H 0.09 4.35 7.83 -2.91 -0.02 4.33 16 9 N -0.62 -29.41 3.41 -693.44 -2.36 -31.77 16 10 C 0.19 8.98 5.39 86.81 0.47 9.45 16 11 C -0.10 -3.58 6.41 31.32 0.20 -3.38 16 12 C -0.10 -2.88 1.06 -52.62 -0.06 -2.94 16 13 C 0.13 3.07 8.03 83.67 0.67 3.74 16 14 N -0.63 -16.55 3.65 -863.75 -3.15 -19.71 16 15 C 0.59 17.20 7.85 86.69 0.68 17.88 16 16 O -0.59 -19.91 16.54 -4.01 -0.07 -19.98 16 17 C -0.15 -3.88 5.84 -20.07 -0.12 -4.00 16 18 C -0.06 -1.26 8.87 22.57 0.20 -1.06 16 19 C -0.13 -2.35 9.99 22.19 0.22 -2.13 16 20 C -0.04 -0.88 10.09 22.53 0.23 -0.65 16 21 C 0.01 0.30 7.22 39.41 0.28 0.58 16 22 N -0.53 -12.77 11.28 -192.02 -2.17 -14.94 16 23 C 0.27 4.80 12.97 180.03 2.34 7.14 16 24 N -0.59 -12.80 6.04 -190.50 -1.15 -13.95 16 25 H 0.43 8.65 8.08 -92.71 -0.75 7.90 16 26 C 0.07 1.93 6.87 39.26 0.27 2.20 16 27 C 0.12 3.00 5.45 83.76 0.46 3.46 16 28 C 0.15 5.22 6.70 86.23 0.58 5.80 16 29 H 0.24 14.06 8.31 -92.71 -0.77 13.29 16 30 H 0.01 0.65 7.38 -2.39 -0.02 0.63 16 31 H 0.00 0.14 7.49 -2.39 -0.02 0.13 16 32 H 0.06 2.18 8.07 -2.39 -0.02 2.16 16 33 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 34 H 0.08 1.93 8.13 -2.38 -0.02 1.91 16 35 H 0.12 2.20 8.14 -2.39 -0.02 2.18 16 36 H 0.15 2.70 5.60 -2.91 -0.02 2.68 16 37 H 0.17 1.88 8.06 -2.91 -0.02 1.86 16 38 H 0.15 2.44 8.06 -2.91 -0.02 2.42 16 39 H 0.27 1.52 8.06 -2.91 -0.02 1.50 16 40 H 0.12 2.31 7.79 -2.39 -0.02 2.29 16 41 H 0.08 2.10 7.82 -2.38 -0.02 2.08 16 42 H 0.03 1.16 8.14 -2.38 -0.02 1.14 16 43 H 0.06 1.93 8.00 -2.39 -0.02 1.91 16 Total: -1.00 -75.15 353.70 1.40 -73.75 By element: Atomic # 1 Polarization: 14.26 SS G_CDS: 0.30 Total: 14.56 kcal Atomic # 6 Polarization: 13.84 SS G_CDS: 7.75 Total: 21.59 kcal Atomic # 7 Polarization: -127.56 SS G_CDS: -8.61 Total: -136.17 kcal Atomic # 8 Polarization: -19.91 SS G_CDS: -0.07 Total: -19.98 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.26 kcal Total: -75.15 1.40 -73.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073071199.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.910 kcal (2) G-P(sol) polarization free energy of solvation -75.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.746 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds