Wall clock time and date at job start Tue Mar 31 2020 14:55:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 120.00278 * 2 1 4 4 H 1.48489 * 109.47031 * 239.99624 * 3 2 1 5 5 H 1.48498 * 109.46961 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47001 * 119.99247 * 3 2 1 7 7 C 1.38811 * 119.99551 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00057 * 180.02562 * 7 2 1 9 9 N 1.36938 * 120.00054 * 0.02562 * 7 2 1 10 10 C 1.47136 * 125.58996 * 0.02562 * 9 7 2 11 11 C 1.54597 * 107.36670 * 180.66450 * 10 9 7 12 12 C 1.53656 * 102.73161 * 20.75459 * 11 10 9 13 13 C 1.52374 * 116.39644 * 197.07935 * 12 11 10 14 14 N 1.47894 * 85.58872 * 218.64753 * 13 12 11 15 15 C 1.34779 * 134.33969 * 203.48396 * 14 13 12 16 16 O 1.21663 * 119.99698 * 180.02562 * 15 14 13 17 17 C 1.46925 * 120.00286 * 0.02562 * 15 14 13 18 18 C 1.36488 * 126.72422 * 0.02562 * 17 15 14 19 19 N 1.35357 * 109.77042 * 179.97438 * 18 17 15 20 20 H 0.97007 * 124.82146 * 180.02562 * 19 18 17 21 21 C 1.37860 * 110.35218 * 359.97438 * 19 18 17 22 22 C 1.39234 * 133.47163 * 180.02562 * 21 19 18 23 23 C 1.38338 * 118.29346 * 179.97438 * 22 21 19 24 24 C 1.38589 * 119.64505 * 0.02562 * 23 22 21 25 25 N 1.31638 * 121.19852 * 359.97438 * 24 23 22 26 26 C 1.32699 * 121.41983 * 359.71880 * 25 24 23 27 27 C 1.47889 * 91.31509 * 23.48730 * 14 13 12 28 28 C 1.47729 * 125.58517 * 179.71795 * 9 7 2 29 29 H 0.97006 * 119.99721 * 0.02562 * 1 2 3 30 30 H 1.09005 * 109.86551 * 300.10816 * 10 9 7 31 31 H 1.08999 * 109.86401 * 61.07922 * 10 9 7 32 32 H 1.08999 * 110.75884 * 139.05990 * 11 10 9 33 33 H 1.08994 * 110.76046 * 262.26004 * 11 10 9 34 34 H 1.08995 * 113.85561 * 332.81627 * 13 12 11 35 35 H 1.09003 * 113.85353 * 104.48465 * 13 12 11 36 36 H 1.07994 * 125.11392 * 359.97438 * 18 17 15 37 37 H 1.07997 * 120.85392 * 359.97438 * 22 21 19 38 38 H 1.08000 * 120.17123 * 180.02562 * 23 22 21 39 39 H 1.08001 * 119.40351 * 179.97438 * 24 23 22 40 40 H 1.09000 * 113.85076 * 222.34692 * 27 14 13 41 41 H 1.08997 * 113.96534 * 90.69292 * 27 14 13 42 42 H 1.09007 * 110.39933 * 276.60127 * 28 9 7 43 43 H 1.08995 * 110.40116 * 39.00987 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6962 -1.2124 5 1 1.2854 2.7464 -0.0006 6 1 3.1039 1.6964 1.2126 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0010 9 7 1.3254 -2.3881 0.0005 10 6 -0.1389 -2.5313 -0.0005 11 6 -0.4546 -4.0446 0.0170 12 6 0.8472 -4.6558 0.5580 13 6 1.0381 -6.1508 0.3337 14 7 1.6262 -6.1634 1.6906 15 6 2.4863 -6.9752 2.3370 16 8 2.8029 -6.7341 3.4867 17 6 3.0416 -8.1511 1.6532 18 6 2.7830 -8.5488 0.3734 19 7 3.4773 -9.6770 0.0954 20 1 3.4546 -10.1464 -0.7532 21 6 4.2222 -10.0633 1.1892 22 6 5.0905 -11.1247 1.4303 23 6 5.6867 -11.2143 2.6755 24 6 5.4080 -10.2582 3.6393 25 7 4.5842 -9.2615 3.3929 26 6 3.9925 -9.1287 2.2126 27 6 0.8950 -4.9309 2.0559 28 6 1.9360 -3.7333 -0.0048 29 1 -0.4850 0.8401 -0.0004 30 1 -0.5583 -2.0551 0.8858 31 1 -0.5551 -2.0743 -0.8984 32 1 -1.2884 -4.2576 0.6859 33 1 -0.6659 -4.4069 -0.9890 34 1 0.1043 -6.7072 0.2528 35 1 1.7490 -6.3907 -0.4571 36 1 2.1236 -8.0399 -0.3140 37 1 5.2934 -11.8592 0.6650 38 1 6.3655 -12.0250 2.8951 39 1 5.8753 -10.3322 4.6102 40 1 1.4935 -4.2133 2.6170 41 1 -0.0828 -5.1121 2.5022 42 1 2.1960 -4.0285 -1.0215 43 1 2.8183 -3.7526 0.6347 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001073129333.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:55:37 Heat of formation + Delta-G solvation = 114.002564 kcal Electronic energy + Delta-G solvation = -27005.324632 eV Core-core repulsion = 23246.612091 eV Total energy + Delta-G solvation = -3758.712541 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.93328 -40.35489 -38.22372 -37.73434 -35.51019 -33.03775 -32.20502 -30.67354 -30.03840 -29.35042 -28.12162 -26.25307 -25.81873 -24.01996 -23.84177 -22.72969 -22.21011 -20.26442 -19.13052 -18.49876 -18.00698 -17.21135 -16.87585 -16.51360 -16.05963 -15.53954 -15.38596 -15.03614 -14.89128 -14.62846 -14.24186 -13.79336 -13.50096 -13.35438 -13.09612 -12.82511 -12.81056 -12.66167 -12.36636 -12.18207 -11.81294 -11.72230 -11.03597 -10.90953 -10.71259 -10.52759 -10.38128 -10.18385 -10.09571 -9.83828 -9.65070 -9.56584 -9.28612 -8.77014 -8.57649 -8.52715 -8.29028 -6.82280 -5.69613 -3.02863 0.63101 1.06854 1.82351 2.55223 2.97324 3.42406 3.43312 3.47711 3.48668 3.87340 3.97661 4.29845 4.46048 4.49385 4.64333 4.68589 4.70634 4.89657 5.00733 5.06676 5.23206 5.26288 5.31363 5.43107 5.53840 5.58542 5.70305 5.75774 5.81987 5.89687 6.04088 6.08414 6.18148 6.22337 6.27507 6.49127 6.52861 6.58851 6.69010 6.73811 6.92756 7.57068 7.61887 7.84085 7.94064 7.98702 8.27148 8.53212 9.23962 9.83592 10.48722 11.42003 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.022389 B = 0.002666 C = 0.002575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.309005 B =10498.685135 C =10872.963887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.007 4.007 3 Si 0.912 3.088 4 H -0.286 1.286 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.227 4.227 8 H 0.077 0.923 9 N -0.604 5.604 10 C 0.178 3.822 11 C -0.131 4.131 12 C -0.102 4.102 13 C 0.105 3.895 14 N -0.641 5.641 15 C 0.604 3.396 16 O -0.526 6.526 17 C -0.202 4.202 18 C 0.116 3.884 19 N -0.575 5.575 20 H 0.422 0.578 21 C 0.033 3.967 22 C -0.080 4.080 23 C -0.160 4.160 24 C 0.096 3.904 25 N -0.431 5.431 26 C 0.138 3.862 27 C 0.134 3.866 28 C 0.162 3.838 29 H 0.252 0.748 30 H 0.047 0.953 31 H 0.044 0.956 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.088 0.912 35 H 0.079 0.921 36 H 0.191 0.809 37 H 0.133 0.867 38 H 0.140 0.860 39 H 0.159 0.841 40 H 0.086 0.914 41 H 0.083 0.917 42 H 0.023 0.977 43 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.391 -25.167 -2.634 25.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.204 4.204 3 Si 0.742 3.258 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.211 1.211 7 C -0.356 4.356 8 H 0.094 0.906 9 N -0.331 5.331 10 C 0.053 3.947 11 C -0.170 4.170 12 C -0.104 4.104 13 C -0.018 4.018 14 N -0.377 5.377 15 C 0.394 3.606 16 O -0.402 6.402 17 C -0.214 4.214 18 C -0.018 4.018 19 N -0.177 5.177 20 H 0.260 0.740 21 C -0.075 4.075 22 C -0.108 4.108 23 C -0.181 4.181 24 C -0.071 4.071 25 N -0.138 5.138 26 C 0.004 3.996 27 C 0.012 3.988 28 C 0.035 3.965 29 H 0.063 0.937 30 H 0.065 0.935 31 H 0.062 0.938 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.106 0.894 35 H 0.097 0.903 36 H 0.208 0.792 37 H 0.151 0.849 38 H 0.158 0.842 39 H 0.177 0.823 40 H 0.105 0.895 41 H 0.101 0.899 42 H 0.040 0.960 43 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 4.441 -24.309 -1.348 24.748 hybrid contribution 0.592 -0.060 -1.209 1.348 sum 5.033 -24.369 -2.557 25.014 Atomic orbital electron populations 1.69948 1.04833 1.25118 1.57135 1.24779 0.95724 0.97613 1.02245 0.86202 0.78464 0.83208 0.77922 1.21238 1.21620 1.21128 1.19001 0.90414 0.82363 1.43777 0.90552 1.44538 1.01621 0.99660 1.87244 1.21210 0.84255 0.87946 1.01252 1.22670 0.94784 0.99764 0.99816 1.22458 0.99595 0.92939 0.95379 1.23203 0.97340 0.96658 0.84576 1.50036 1.44246 1.27827 1.15598 1.16728 0.78418 0.80429 0.85007 1.90835 1.60222 1.72423 1.16751 1.19988 1.06733 1.00229 0.94413 1.22674 0.95499 0.87211 0.96385 1.41392 1.38860 1.23781 1.13648 0.73985 1.19113 0.99566 0.99388 0.89446 1.20493 0.96036 0.96149 0.98148 1.21896 1.01551 1.01172 0.93500 1.22783 0.94819 0.89831 0.99638 1.67157 1.06082 1.20965 1.19612 1.19501 0.97193 0.93791 0.89105 1.22911 0.95687 0.83714 0.96442 1.21040 0.93252 0.85492 0.96677 0.93732 0.93510 0.93786 0.91718 0.91779 0.89431 0.90263 0.79237 0.84876 0.84212 0.82337 0.89508 0.89933 0.95967 0.94047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.79 10.30 55.49 0.57 -26.22 16 2 C -0.01 -0.21 5.49 -17.43 -0.10 -0.31 16 3 Si 0.91 22.23 29.55 -169.99 -5.02 17.20 16 4 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 5 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 6 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 7 C -0.23 -6.30 10.28 -15.06 -0.15 -6.46 16 8 H 0.08 2.07 7.83 -52.49 -0.41 1.66 16 9 N -0.60 -14.99 3.41 -170.50 -0.58 -15.57 16 10 C 0.18 4.09 5.39 -2.86 -0.02 4.08 16 11 C -0.13 -2.15 6.36 -25.55 -0.16 -2.32 16 12 C -0.10 -1.61 0.99 -154.85 -0.15 -1.76 16 13 C 0.11 1.22 6.47 -3.60 -0.02 1.20 16 14 N -0.64 -9.84 3.62 -188.37 -0.68 -10.53 16 15 C 0.60 10.69 8.03 -12.74 -0.10 10.59 16 16 O -0.53 -11.68 17.69 5.22 0.09 -11.58 16 17 C -0.20 -2.93 6.27 -103.28 -0.65 -3.58 16 18 C 0.12 1.09 10.96 -16.63 -0.18 0.91 16 19 N -0.57 -4.35 5.98 -10.46 -0.06 -4.41 16 20 H 0.42 1.45 8.96 -40.82 -0.37 1.09 16 21 C 0.03 0.34 7.27 -83.94 -0.61 -0.27 16 22 C -0.08 -0.64 10.19 -39.17 -0.40 -1.04 16 23 C -0.16 -1.28 10.09 -39.41 -0.40 -1.68 16 24 C 0.10 1.05 11.16 -17.51 -0.20 0.85 16 25 N -0.43 -6.76 10.41 -9.71 -0.10 -6.86 16 26 C 0.14 2.05 7.35 -82.92 -0.61 1.44 16 27 C 0.13 2.20 8.15 -3.60 -0.03 2.17 16 28 C 0.16 3.21 6.63 -3.16 -0.02 3.18 16 29 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 30 H 0.05 1.21 7.40 -51.93 -0.38 0.82 16 31 H 0.04 1.13 7.47 -51.93 -0.39 0.74 16 32 H 0.06 0.95 7.99 -51.93 -0.41 0.53 16 33 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 35 H 0.08 0.74 6.33 -51.93 -0.33 0.41 16 36 H 0.19 1.19 4.99 -52.49 -0.26 0.93 16 37 H 0.13 0.61 8.06 -52.49 -0.42 0.19 16 38 H 0.14 0.63 8.06 -52.49 -0.42 0.21 16 39 H 0.16 1.28 8.06 -52.49 -0.42 0.86 16 40 H 0.09 1.66 8.12 -51.93 -0.42 1.24 16 41 H 0.08 1.22 8.04 -51.93 -0.42 0.80 16 42 H 0.02 0.43 8.14 -51.92 -0.42 0.01 16 43 H 0.04 0.87 8.07 -51.93 -0.42 0.45 16 LS Contribution 355.47 15.07 5.36 5.36 Total: -1.00 -37.93 355.47 -9.71 -47.64 By element: Atomic # 1 Polarization: 3.44 SS G_CDS: -5.48 Total: -2.05 kcal Atomic # 6 Polarization: 10.82 SS G_CDS: -3.80 Total: 7.02 kcal Atomic # 7 Polarization: -62.73 SS G_CDS: -0.85 Total: -63.59 kcal Atomic # 8 Polarization: -11.68 SS G_CDS: 0.09 Total: -11.58 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -37.93 -9.71 -47.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073129333.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.641 kcal (2) G-P(sol) polarization free energy of solvation -37.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 123.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.639 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds