Wall clock time and date at job start Tue Mar 31 2020 14:55:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 120.00278 * 2 1 4 4 H 1.48489 * 109.47031 * 239.99624 * 3 2 1 5 5 H 1.48498 * 109.46961 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47001 * 119.99247 * 3 2 1 7 7 C 1.38811 * 119.99551 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00057 * 180.02562 * 7 2 1 9 9 N 1.36938 * 120.00054 * 0.02562 * 7 2 1 10 10 C 1.47136 * 125.58996 * 0.02562 * 9 7 2 11 11 C 1.54597 * 107.36670 * 180.66450 * 10 9 7 12 12 C 1.53656 * 102.73161 * 20.75459 * 11 10 9 13 13 C 1.52374 * 116.39644 * 197.07935 * 12 11 10 14 14 N 1.47894 * 85.58872 * 218.64753 * 13 12 11 15 15 C 1.34779 * 134.33969 * 203.48396 * 14 13 12 16 16 O 1.21663 * 119.99698 * 180.02562 * 15 14 13 17 17 C 1.46925 * 120.00286 * 0.02562 * 15 14 13 18 18 C 1.36488 * 126.72422 * 0.02562 * 17 15 14 19 19 N 1.35357 * 109.77042 * 179.97438 * 18 17 15 20 20 H 0.97007 * 124.82146 * 180.02562 * 19 18 17 21 21 C 1.37860 * 110.35218 * 359.97438 * 19 18 17 22 22 C 1.39234 * 133.47163 * 180.02562 * 21 19 18 23 23 C 1.38338 * 118.29346 * 179.97438 * 22 21 19 24 24 C 1.38589 * 119.64505 * 0.02562 * 23 22 21 25 25 N 1.31638 * 121.19852 * 359.97438 * 24 23 22 26 26 C 1.32699 * 121.41983 * 359.71880 * 25 24 23 27 27 C 1.47889 * 91.31509 * 23.48730 * 14 13 12 28 28 C 1.47729 * 125.58517 * 179.71795 * 9 7 2 29 29 H 0.97006 * 119.99721 * 0.02562 * 1 2 3 30 30 H 1.09005 * 109.86551 * 300.10816 * 10 9 7 31 31 H 1.08999 * 109.86401 * 61.07922 * 10 9 7 32 32 H 1.08999 * 110.75884 * 139.05990 * 11 10 9 33 33 H 1.08994 * 110.76046 * 262.26004 * 11 10 9 34 34 H 1.08995 * 113.85561 * 332.81627 * 13 12 11 35 35 H 1.09003 * 113.85353 * 104.48465 * 13 12 11 36 36 H 1.07994 * 125.11392 * 359.97438 * 18 17 15 37 37 H 1.07997 * 120.85392 * 359.97438 * 22 21 19 38 38 H 1.08000 * 120.17123 * 180.02562 * 23 22 21 39 39 H 1.08001 * 119.40351 * 179.97438 * 24 23 22 40 40 H 1.09000 * 113.85076 * 222.34692 * 27 14 13 41 41 H 1.08997 * 113.96534 * 90.69292 * 27 14 13 42 42 H 1.09007 * 110.39933 * 276.60127 * 28 9 7 43 43 H 1.08995 * 110.40116 * 39.00987 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6962 -1.2124 5 1 1.2854 2.7464 -0.0006 6 1 3.1039 1.6964 1.2126 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0010 9 7 1.3254 -2.3881 0.0005 10 6 -0.1389 -2.5313 -0.0005 11 6 -0.4546 -4.0446 0.0170 12 6 0.8472 -4.6558 0.5580 13 6 1.0381 -6.1508 0.3337 14 7 1.6262 -6.1634 1.6906 15 6 2.4863 -6.9752 2.3370 16 8 2.8029 -6.7341 3.4867 17 6 3.0416 -8.1511 1.6532 18 6 2.7830 -8.5488 0.3734 19 7 3.4773 -9.6770 0.0954 20 1 3.4546 -10.1464 -0.7532 21 6 4.2222 -10.0633 1.1892 22 6 5.0905 -11.1247 1.4303 23 6 5.6867 -11.2143 2.6755 24 6 5.4080 -10.2582 3.6393 25 7 4.5842 -9.2615 3.3929 26 6 3.9925 -9.1287 2.2126 27 6 0.8950 -4.9309 2.0559 28 6 1.9360 -3.7333 -0.0048 29 1 -0.4850 0.8401 -0.0004 30 1 -0.5583 -2.0551 0.8858 31 1 -0.5551 -2.0743 -0.8984 32 1 -1.2884 -4.2576 0.6859 33 1 -0.6659 -4.4069 -0.9890 34 1 0.1043 -6.7072 0.2528 35 1 1.7490 -6.3907 -0.4571 36 1 2.1236 -8.0399 -0.3140 37 1 5.2934 -11.8592 0.6650 38 1 6.3655 -12.0250 2.8951 39 1 5.8753 -10.3322 4.6102 40 1 1.4935 -4.2133 2.6170 41 1 -0.0828 -5.1121 2.5022 42 1 2.1960 -4.0285 -1.0215 43 1 2.8183 -3.7526 0.6347 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001073129333.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:55:36 Heat of formation + Delta-G solvation = 85.185349 kcal Electronic energy + Delta-G solvation = -27006.574240 eV Core-core repulsion = 23246.612091 eV Total energy + Delta-G solvation = -3759.962149 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.71238 -41.60411 -39.28936 -38.81909 -37.16246 -34.13714 -33.75553 -31.80593 -31.08723 -30.63972 -29.49978 -27.54408 -27.34558 -25.52229 -24.75605 -23.47648 -23.27630 -22.06059 -20.11294 -19.79094 -18.89675 -18.78231 -18.03898 -17.42805 -17.00493 -16.83327 -16.63458 -16.45711 -15.95701 -15.82835 -15.64954 -15.40894 -14.73071 -14.26453 -14.17636 -13.90404 -13.83600 -13.66669 -13.59719 -13.53860 -13.24692 -13.18170 -12.85115 -12.74734 -12.37435 -12.06658 -11.91476 -11.72325 -11.64229 -11.28600 -11.22818 -10.82274 -10.65416 -10.18645 -9.71342 -9.51365 -9.15822 -8.85420 -7.83628 -5.17648 -0.08298 0.29887 0.98321 1.44495 1.47611 1.53559 1.78693 1.96272 2.36627 2.49648 3.00136 3.25653 3.30508 3.44265 3.48425 3.69401 3.73561 3.83466 3.98917 4.12719 4.14970 4.20086 4.21467 4.31180 4.50409 4.56951 4.59703 4.70490 4.70532 4.78481 4.86810 5.02310 5.02997 5.12781 5.13763 5.19167 5.25488 5.30222 5.33526 5.46607 5.77167 5.84945 5.87036 6.23921 6.44766 6.79496 7.14148 7.19599 7.30190 7.81106 8.43770 9.25798 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.022389 B = 0.002666 C = 0.002575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.309005 B =10498.685135 C =10872.963887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C -0.063 4.063 3 Si 0.973 3.027 4 H -0.275 1.275 5 H -0.292 1.292 6 H -0.284 1.284 7 C -0.242 4.242 8 H 0.073 0.927 9 N -0.628 5.628 10 C 0.181 3.819 11 C -0.109 4.109 12 C -0.094 4.094 13 C 0.124 3.876 14 N -0.641 5.641 15 C 0.597 3.403 16 O -0.597 6.597 17 C -0.264 4.264 18 C 0.162 3.838 19 N -0.547 5.547 20 H 0.447 0.553 21 C 0.027 3.973 22 C -0.067 4.067 23 C -0.154 4.154 24 C 0.081 3.919 25 N -0.501 5.501 26 C 0.092 3.908 27 C 0.124 3.876 28 C 0.158 3.842 29 H 0.247 0.753 30 H 0.004 0.996 31 H 0.011 0.989 32 H 0.088 0.912 33 H 0.098 0.902 34 H 0.136 0.864 35 H 0.114 0.886 36 H 0.230 0.770 37 H 0.179 0.821 38 H 0.181 0.819 39 H 0.172 0.828 40 H 0.041 0.959 41 H 0.103 0.897 42 H 0.045 0.955 43 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.625 -29.231 -5.962 30.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.256 4.256 3 Si 0.801 3.199 4 H -0.201 1.201 5 H -0.218 1.218 6 H -0.211 1.211 7 C -0.372 4.372 8 H 0.091 0.909 9 N -0.354 5.354 10 C 0.057 3.943 11 C -0.148 4.148 12 C -0.096 4.096 13 C 0.004 3.996 14 N -0.376 5.376 15 C 0.390 3.610 16 O -0.479 6.479 17 C -0.276 4.276 18 C 0.025 3.975 19 N -0.151 5.151 20 H 0.290 0.710 21 C -0.081 4.081 22 C -0.095 4.095 23 C -0.175 4.175 24 C -0.085 4.085 25 N -0.209 5.209 26 C -0.041 4.041 27 C 0.001 3.999 28 C 0.033 3.967 29 H 0.056 0.944 30 H 0.022 0.978 31 H 0.029 0.971 32 H 0.107 0.893 33 H 0.116 0.884 34 H 0.153 0.847 35 H 0.132 0.868 36 H 0.246 0.754 37 H 0.196 0.804 38 H 0.198 0.802 39 H 0.189 0.811 40 H 0.060 0.940 41 H 0.121 0.879 42 H 0.062 0.938 43 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges 4.687 -28.443 -4.755 29.216 hybrid contribution 0.613 1.148 -0.156 1.311 sum 5.300 -27.295 -4.911 28.235 Atomic orbital electron populations 1.70166 1.05979 1.25212 1.58249 1.25559 0.96637 1.00680 1.02762 0.85237 0.77259 0.79318 0.78046 1.20128 1.21751 1.21062 1.19335 0.90728 0.84104 1.42995 0.90870 1.44843 1.02775 1.00751 1.87033 1.21027 0.83086 0.92576 0.97653 1.22521 0.95563 0.94191 1.02489 1.22265 0.97469 0.95394 0.94441 1.23496 0.99997 0.92908 0.83234 1.50064 1.43684 1.26734 1.17097 1.17329 0.77964 0.81198 0.84499 1.90773 1.62746 1.74437 1.19917 1.19871 1.10018 1.00678 0.96985 1.23013 0.93590 0.86384 0.94464 1.41360 1.36976 1.22850 1.13887 0.70968 1.19240 1.00345 0.99306 0.89179 1.21057 0.93907 0.95596 0.98921 1.22308 1.01411 1.00970 0.92796 1.23247 0.94136 0.89789 1.01283 1.67049 1.08629 1.23706 1.21561 1.19905 0.98352 0.95585 0.90283 1.22938 0.96053 0.84032 0.96868 1.21198 0.93675 0.84340 0.97440 0.94412 0.97754 0.97080 0.89298 0.88384 0.84661 0.86837 0.75402 0.80352 0.80188 0.81096 0.94010 0.87926 0.93768 0.96447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.22 10.30 21.65 0.22 -57.00 16 2 C -0.06 -3.66 5.49 84.86 0.47 -3.20 16 3 Si 0.97 47.00 29.55 68.60 2.03 49.02 16 4 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 5 H -0.29 -14.02 7.11 99.48 0.71 -13.32 16 6 H -0.28 -13.57 7.11 99.48 0.71 -12.86 16 7 C -0.24 -13.92 10.28 84.03 0.86 -13.05 16 8 H 0.07 4.11 7.83 -2.91 -0.02 4.08 16 9 N -0.63 -31.99 3.41 -693.33 -2.36 -34.36 16 10 C 0.18 8.53 5.39 86.80 0.47 9.00 16 11 C -0.11 -3.29 6.36 31.36 0.20 -3.09 16 12 C -0.09 -2.79 0.99 -52.16 -0.05 -2.84 16 13 C 0.12 2.30 6.47 85.90 0.56 2.86 16 14 N -0.64 -19.18 3.62 -868.09 -3.14 -22.33 16 15 C 0.60 21.87 8.03 86.52 0.69 22.57 16 16 O -0.60 -28.89 17.69 -4.23 -0.07 -28.96 16 17 C -0.26 -7.50 6.27 -19.00 -0.12 -7.62 16 18 C 0.16 2.39 10.96 83.74 0.92 3.31 16 19 N -0.55 -5.71 5.98 -187.00 -1.12 -6.83 16 20 H 0.45 0.31 8.96 -92.70 -0.83 -0.52 16 21 C 0.03 0.49 7.27 38.98 0.28 0.78 16 22 C -0.07 -0.80 10.19 22.53 0.23 -0.57 16 23 C -0.15 -2.03 10.09 22.38 0.23 -1.81 16 24 C 0.08 1.78 11.16 84.81 0.95 2.73 16 25 N -0.50 -16.58 10.41 -184.62 -1.92 -18.50 16 26 C 0.09 2.73 7.35 41.98 0.31 3.04 16 27 C 0.12 4.12 8.15 85.91 0.70 4.82 16 28 C 0.16 6.24 6.63 86.28 0.57 6.81 16 29 H 0.25 14.54 8.31 -92.70 -0.77 13.77 16 30 H 0.00 0.23 7.40 -2.38 -0.02 0.21 16 31 H 0.01 0.58 7.47 -2.39 -0.02 0.56 16 32 H 0.09 2.31 7.99 -2.39 -0.02 2.29 16 33 H 0.10 2.37 8.14 -2.39 -0.02 2.35 16 34 H 0.14 1.42 8.14 -2.39 -0.02 1.40 16 35 H 0.11 1.38 6.33 -2.39 -0.02 1.36 16 36 H 0.23 1.32 4.99 -2.91 -0.01 1.30 16 37 H 0.18 0.48 8.06 -2.91 -0.02 0.46 16 38 H 0.18 0.82 8.06 -2.91 -0.02 0.80 16 39 H 0.17 2.88 8.06 -2.91 -0.02 2.86 16 40 H 0.04 1.74 8.12 -2.39 -0.02 1.72 16 41 H 0.10 2.98 8.04 -2.39 -0.02 2.96 16 42 H 0.04 1.58 8.14 -2.38 -0.02 1.56 16 43 H 0.02 0.76 8.07 -2.39 -0.02 0.74 16 Total: -1.00 -96.62 355.47 1.12 -95.50 By element: Atomic # 1 Polarization: -0.51 SS G_CDS: 0.23 Total: -0.29 kcal Atomic # 6 Polarization: 16.48 SS G_CDS: 7.26 Total: 23.74 kcal Atomic # 7 Polarization: -130.69 SS G_CDS: -8.32 Total: -139.01 kcal Atomic # 8 Polarization: -28.89 SS G_CDS: -0.07 Total: -28.96 kcal Atomic # 14 Polarization: 47.00 SS G_CDS: 2.03 Total: 49.02 kcal Total: -96.62 1.12 -95.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073129333.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 180.686 kcal (2) G-P(sol) polarization free energy of solvation -96.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.501 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds