Wall clock time and date at job start Tue Mar 31 2020 15:06:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86799 * 119.99625 * 2 1 4 4 H 1.48503 * 109.46798 * 239.99606 * 3 2 1 5 5 H 1.48500 * 109.47478 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47163 * 119.99929 * 3 2 1 7 7 C 1.38808 * 120.00255 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99891 * 179.97438 * 7 2 1 9 9 N 1.36940 * 120.00131 * 0.02562 * 7 2 1 10 10 C 1.47153 * 125.57792 * 0.02654 * 9 7 2 11 11 C 1.54625 * 107.37574 * 179.04242 * 10 9 7 12 12 C 1.53518 * 102.70230 * 339.38248 * 11 10 9 13 13 C 1.51787 * 116.99865 * 164.16991 * 12 11 10 14 14 N 1.47386 * 87.51858 * 92.92603 * 13 12 11 15 15 C 1.34784 * 135.85005 * 205.66415 * 14 13 12 16 16 O 1.21610 * 119.99835 * 359.97438 * 15 14 13 17 17 C 1.47391 * 119.99680 * 179.97438 * 15 14 13 18 18 N 1.31571 * 126.82354 * 359.69269 * 17 15 14 19 19 N 1.28383 * 111.96236 * 179.80646 * 18 17 15 20 20 H 0.97005 * 124.37664 * 180.19716 * 19 18 17 21 21 C 1.37051 * 111.25920 * 0.47061 * 19 18 17 22 22 C 1.39129 * 134.72915 * 179.69948 * 21 19 18 23 23 C 1.36683 * 119.78161 * 179.97438 * 22 21 19 24 24 C 1.38896 * 120.89654 * 0.04438 * 23 22 21 25 25 C 1.36713 * 120.52522 * 359.97438 * 24 23 22 26 26 C 1.39200 * 119.51150 * 0.02562 * 25 24 23 27 27 C 1.47385 * 88.29645 * 25.91742 * 14 13 12 28 28 C 1.47750 * 125.58376 * 179.97438 * 9 7 2 29 29 H 0.96995 * 120.00299 * 0.02562 * 1 2 3 30 30 H 1.08999 * 109.86621 * 59.58652 * 10 9 7 31 31 H 1.09000 * 109.86122 * 298.48482 * 10 9 7 32 32 H 1.09001 * 110.76520 * 221.07885 * 11 10 9 33 33 H 1.09003 * 110.76986 * 97.68633 * 11 10 9 34 34 H 1.08997 * 113.54236 * 338.26302 * 13 12 11 35 35 H 1.08996 * 113.60336 * 207.59806 * 13 12 11 36 36 H 1.07997 * 120.10517 * 0.02562 * 22 21 19 37 37 H 1.08001 * 119.54767 * 180.02562 * 23 22 21 38 38 H 1.07999 * 119.73689 * 179.97438 * 24 23 22 39 39 H 1.08007 * 120.25054 * 180.02562 * 25 24 23 40 40 H 1.08999 * 113.54282 * 88.73945 * 27 14 13 41 41 H 1.08995 * 113.54696 * 219.41880 * 27 14 13 42 42 H 1.09004 * 110.40255 * 83.54777 * 28 9 7 43 43 H 1.09002 * 110.40288 * 321.12987 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0001 9 7 1.3257 -2.3881 0.0005 10 6 -0.1388 -2.5312 -0.0006 11 6 -0.4549 -4.0446 -0.0248 12 6 0.8478 -4.6529 -0.5631 13 6 1.0385 -6.1474 -0.3781 14 7 0.4477 -6.3237 -1.7168 15 6 -0.2182 -7.3042 -2.3585 16 8 -0.4480 -8.3551 -1.7914 17 6 -0.6677 -7.1027 -3.7477 18 7 -0.4978 -6.0250 -4.4830 19 7 -1.0011 -6.1600 -5.6564 20 1 -0.9753 -5.4776 -6.3453 21 6 -1.5848 -7.3907 -5.8081 22 6 -2.2583 -8.0343 -6.8415 23 6 -2.7288 -9.3044 -6.6579 24 6 -2.5451 -9.9654 -5.4502 25 6 -1.8872 -9.3562 -4.4182 26 6 -1.4000 -8.0628 -4.5840 27 6 0.9074 -4.9637 -2.0506 28 6 1.9366 -3.7334 0.0005 29 1 -0.4850 0.8400 -0.0004 30 1 -0.5573 -2.0511 -0.8852 31 1 -0.5557 -2.0802 0.9000 32 1 -1.2865 -4.2550 -0.6973 33 1 -0.6665 -4.4114 0.9796 34 1 0.4321 -6.5676 0.4242 35 1 2.0839 -6.4501 -0.3202 36 1 -2.4081 -7.5322 -7.7858 37 1 -3.2507 -9.8005 -7.4628 38 1 -2.9250 -10.9686 -5.3254 39 1 -1.7465 -9.8744 -3.4811 40 1 1.9166 -4.9339 -2.4614 41 1 0.1916 -4.3957 -2.6447 42 1 2.1982 -4.0319 1.0157 43 1 2.8179 -3.7505 -0.6406 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001073400140.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:06:38 Heat of formation + Delta-G solvation = 128.667667 kcal Electronic energy + Delta-G solvation = -27044.495792 eV Core-core repulsion = 23286.419177 eV Total energy + Delta-G solvation = -3758.076615 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.63284 -40.51000 -38.10958 -37.96451 -35.62324 -32.77331 -32.15708 -30.45189 -30.36005 -29.31756 -28.58964 -26.02098 -25.87136 -24.18037 -23.56537 -22.82805 -22.38790 -20.26952 -19.30139 -18.42704 -18.10247 -17.57839 -16.70304 -16.38906 -16.04007 -15.78770 -15.47848 -15.16815 -14.76722 -14.41646 -14.28988 -14.02141 -13.77741 -13.49605 -12.93027 -12.44793 -12.41063 -12.27208 -12.22384 -11.91441 -11.78135 -11.44982 -11.13681 -10.95938 -10.90224 -10.61337 -10.44567 -10.35071 -10.22108 -10.12511 -9.86852 -9.69163 -9.60416 -9.01615 -8.59153 -8.57753 -8.27607 -6.82751 -5.70421 -3.04017 0.63099 1.12666 1.77380 2.47001 2.88985 3.25436 3.40595 3.45033 3.46183 3.61084 4.10722 4.25944 4.44986 4.50069 4.68582 4.72774 4.88830 5.02554 5.13700 5.20494 5.28930 5.38639 5.50553 5.59667 5.69167 5.71527 5.77282 5.82698 5.90108 5.95734 6.07520 6.20962 6.23595 6.26883 6.28004 6.49295 6.55726 6.56293 6.69903 6.73610 6.79826 7.56312 7.60134 7.63935 7.80773 7.83701 8.22838 8.26023 9.22274 9.82454 10.48392 11.41055 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.021233 B = 0.002787 C = 0.002575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1318.393790 B =10045.093109 C =10871.875005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.008 4.008 3 Si 0.911 3.089 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.285 1.285 7 C -0.227 4.227 8 H 0.078 0.922 9 N -0.604 5.604 10 C 0.180 3.820 11 C -0.117 4.117 12 C -0.107 4.107 13 C 0.123 3.877 14 N -0.629 5.629 15 C 0.630 3.370 16 O -0.540 6.540 17 C 0.012 3.988 18 N -0.194 5.194 19 N -0.415 5.415 20 H 0.448 0.552 21 C 0.063 3.937 22 C -0.121 4.121 23 C -0.085 4.085 24 C -0.143 4.143 25 C -0.042 4.042 26 C -0.109 4.109 27 C 0.128 3.872 28 C 0.154 3.846 29 H 0.252 0.748 30 H 0.046 0.954 31 H 0.043 0.957 32 H 0.060 0.940 33 H 0.064 0.936 34 H 0.080 0.920 35 H 0.087 0.913 36 H 0.128 0.872 37 H 0.130 0.870 38 H 0.129 0.871 39 H 0.138 0.862 40 H 0.086 0.914 41 H 0.087 0.913 42 H 0.027 0.973 43 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.019 -17.315 -12.936 21.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.204 4.204 3 Si 0.742 3.258 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.356 4.356 8 H 0.095 0.905 9 N -0.331 5.331 10 C 0.056 3.944 11 C -0.155 4.155 12 C -0.109 4.109 13 C 0.000 4.000 14 N -0.363 5.363 15 C 0.418 3.582 16 O -0.416 6.416 17 C -0.159 4.159 18 N -0.024 5.024 19 N -0.135 5.135 20 H 0.293 0.707 21 C -0.050 4.050 22 C -0.142 4.142 23 C -0.106 4.106 24 C -0.162 4.162 25 C -0.062 4.062 26 C -0.117 4.117 27 C 0.006 3.994 28 C 0.027 3.973 29 H 0.063 0.937 30 H 0.064 0.936 31 H 0.062 0.938 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.098 0.902 35 H 0.105 0.895 36 H 0.146 0.854 37 H 0.148 0.852 38 H 0.147 0.853 39 H 0.156 0.844 40 H 0.104 0.896 41 H 0.105 0.895 42 H 0.045 0.955 43 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -3.849 -16.730 -12.687 21.347 hybrid contribution 0.130 0.666 -0.616 0.916 sum -3.720 -16.064 -13.303 21.186 Atomic orbital electron populations 1.69955 1.04860 1.25102 1.57046 1.24793 0.95698 0.97627 1.02321 0.86210 0.78435 0.83287 0.77872 1.21230 1.21677 1.21187 1.18998 0.90395 0.82353 1.43812 0.90458 1.44531 1.01605 0.99666 1.87295 1.21212 0.84225 0.87867 1.01120 1.22463 0.94238 0.99184 0.99617 1.22218 0.99968 0.93307 0.95430 1.22824 0.98445 0.94369 0.84339 1.49596 1.53658 1.16217 1.16843 1.16060 0.77957 0.81990 0.82235 1.90778 1.58472 1.25773 1.66531 1.22701 1.06282 0.91196 0.95771 1.73070 1.13093 1.23601 0.92635 1.43129 1.45499 1.13528 1.11325 0.70719 1.19234 1.00835 0.87736 0.97170 1.19779 1.01433 0.95762 0.97225 1.20736 0.98406 0.93737 0.97685 1.20840 1.01382 1.00728 0.93284 1.20422 0.94258 0.91936 0.99591 1.19431 1.03474 0.96165 0.92606 1.22893 1.00137 0.79353 0.97059 1.21131 0.93193 0.85705 0.97234 0.93740 0.93572 0.93834 0.92147 0.91776 0.90176 0.89503 0.85422 0.85172 0.85272 0.84376 0.89632 0.89475 0.95514 0.93932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.73 10.30 55.49 0.57 -26.15 16 2 C -0.01 -0.23 5.49 -17.43 -0.10 -0.32 16 3 Si 0.91 21.79 29.55 -169.99 -5.02 16.77 16 4 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.23 -6.16 10.28 -15.06 -0.15 -6.31 16 8 H 0.08 2.01 7.83 -52.49 -0.41 1.60 16 9 N -0.60 -14.85 3.41 -170.54 -0.58 -15.44 16 10 C 0.18 4.28 5.39 -2.83 -0.02 4.26 16 11 C -0.12 -2.17 6.40 -25.61 -0.16 -2.33 16 12 C -0.11 -1.80 1.06 -155.22 -0.16 -1.96 16 13 C 0.12 1.78 8.03 -7.48 -0.06 1.72 16 14 N -0.63 -9.96 3.70 -187.03 -0.69 -10.65 16 15 C 0.63 10.62 8.06 -12.53 -0.10 10.52 16 16 O -0.54 -10.09 17.17 5.27 0.09 -10.00 16 17 C 0.01 0.18 7.29 -80.76 -0.59 -0.41 16 18 N -0.19 -2.71 10.67 34.46 0.37 -2.35 16 19 N -0.42 -4.48 6.85 32.34 0.22 -4.26 16 20 H 0.45 3.16 8.96 -190.49 -1.71 1.45 16 21 C 0.06 0.71 7.38 -84.21 -0.62 0.08 16 22 C -0.12 -1.01 10.03 -39.81 -0.40 -1.41 16 23 C -0.08 -0.65 9.96 -39.90 -0.40 -1.05 16 24 C -0.14 -1.26 9.98 -39.89 -0.40 -1.66 16 25 C -0.04 -0.49 9.87 -39.78 -0.39 -0.89 16 26 C -0.11 -1.48 6.34 -105.05 -0.67 -2.15 16 27 C 0.13 2.02 7.14 -7.34 -0.05 1.96 16 28 C 0.15 2.97 6.70 -3.23 -0.02 2.95 16 29 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 30 H 0.05 1.22 7.38 -51.93 -0.38 0.83 16 31 H 0.04 1.15 7.49 -51.93 -0.39 0.76 16 32 H 0.06 1.09 8.07 -51.93 -0.42 0.67 16 33 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 34 H 0.08 1.14 8.13 -51.93 -0.42 0.72 16 35 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 36 H 0.13 0.70 8.06 -52.49 -0.42 0.28 16 37 H 0.13 0.61 8.06 -52.49 -0.42 0.19 16 38 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 39 H 0.14 1.66 7.65 -52.48 -0.40 1.26 16 40 H 0.09 1.25 8.06 -51.93 -0.42 0.83 16 41 H 0.09 1.47 7.55 -51.93 -0.39 1.08 16 42 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.04 0.78 8.00 -51.93 -0.42 0.37 16 LS Contribution 358.42 15.07 5.40 5.40 Total: -1.00 -33.27 358.42 -10.97 -44.24 By element: Atomic # 1 Polarization: 6.45 SS G_CDS: -7.03 Total: -0.58 kcal Atomic # 6 Polarization: 7.31 SS G_CDS: -4.29 Total: 3.02 kcal Atomic # 7 Polarization: -58.73 SS G_CDS: -0.11 Total: -58.85 kcal Atomic # 8 Polarization: -10.09 SS G_CDS: 0.09 Total: -10.00 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -33.27 -10.97 -44.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073400140.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.910 kcal (2) G-P(sol) polarization free energy of solvation -33.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 139.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.242 kcal (6) G-S(sol) free energy of system = (1) + (5) 128.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds