Wall clock time and date at job start Tue Mar 31 2020 15:06:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86799 * 119.99625 * 2 1 4 4 H 1.48503 * 109.46798 * 239.99606 * 3 2 1 5 5 H 1.48500 * 109.47478 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47163 * 119.99929 * 3 2 1 7 7 C 1.38808 * 120.00255 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99891 * 179.97438 * 7 2 1 9 9 N 1.36940 * 120.00131 * 0.02562 * 7 2 1 10 10 C 1.47153 * 125.57792 * 0.02654 * 9 7 2 11 11 C 1.54625 * 107.37574 * 179.04242 * 10 9 7 12 12 C 1.53518 * 102.70230 * 339.38248 * 11 10 9 13 13 C 1.51787 * 116.99865 * 164.16991 * 12 11 10 14 14 N 1.47386 * 87.51858 * 92.92603 * 13 12 11 15 15 C 1.34784 * 135.85005 * 205.66415 * 14 13 12 16 16 O 1.21610 * 119.99835 * 359.97438 * 15 14 13 17 17 C 1.47391 * 119.99680 * 179.97438 * 15 14 13 18 18 N 1.31571 * 126.82354 * 359.69269 * 17 15 14 19 19 N 1.28383 * 111.96236 * 179.80646 * 18 17 15 20 20 H 0.97005 * 124.37664 * 180.19716 * 19 18 17 21 21 C 1.37051 * 111.25920 * 0.47061 * 19 18 17 22 22 C 1.39129 * 134.72915 * 179.69948 * 21 19 18 23 23 C 1.36683 * 119.78161 * 179.97438 * 22 21 19 24 24 C 1.38896 * 120.89654 * 0.04438 * 23 22 21 25 25 C 1.36713 * 120.52522 * 359.97438 * 24 23 22 26 26 C 1.39200 * 119.51150 * 0.02562 * 25 24 23 27 27 C 1.47385 * 88.29645 * 25.91742 * 14 13 12 28 28 C 1.47750 * 125.58376 * 179.97438 * 9 7 2 29 29 H 0.96995 * 120.00299 * 0.02562 * 1 2 3 30 30 H 1.08999 * 109.86621 * 59.58652 * 10 9 7 31 31 H 1.09000 * 109.86122 * 298.48482 * 10 9 7 32 32 H 1.09001 * 110.76520 * 221.07885 * 11 10 9 33 33 H 1.09003 * 110.76986 * 97.68633 * 11 10 9 34 34 H 1.08997 * 113.54236 * 338.26302 * 13 12 11 35 35 H 1.08996 * 113.60336 * 207.59806 * 13 12 11 36 36 H 1.07997 * 120.10517 * 0.02562 * 22 21 19 37 37 H 1.08001 * 119.54767 * 180.02562 * 23 22 21 38 38 H 1.07999 * 119.73689 * 179.97438 * 24 23 22 39 39 H 1.08007 * 120.25054 * 180.02562 * 25 24 23 40 40 H 1.08999 * 113.54282 * 88.73945 * 27 14 13 41 41 H 1.08995 * 113.54696 * 219.41880 * 27 14 13 42 42 H 1.09004 * 110.40255 * 83.54777 * 28 9 7 43 43 H 1.09002 * 110.40288 * 321.12987 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0001 9 7 1.3257 -2.3881 0.0005 10 6 -0.1388 -2.5312 -0.0006 11 6 -0.4549 -4.0446 -0.0248 12 6 0.8478 -4.6529 -0.5631 13 6 1.0385 -6.1474 -0.3781 14 7 0.4477 -6.3237 -1.7168 15 6 -0.2182 -7.3042 -2.3585 16 8 -0.4480 -8.3551 -1.7914 17 6 -0.6677 -7.1027 -3.7477 18 7 -0.4978 -6.0250 -4.4830 19 7 -1.0011 -6.1600 -5.6564 20 1 -0.9753 -5.4776 -6.3453 21 6 -1.5848 -7.3907 -5.8081 22 6 -2.2583 -8.0343 -6.8415 23 6 -2.7288 -9.3044 -6.6579 24 6 -2.5451 -9.9654 -5.4502 25 6 -1.8872 -9.3562 -4.4182 26 6 -1.4000 -8.0628 -4.5840 27 6 0.9074 -4.9637 -2.0506 28 6 1.9366 -3.7334 0.0005 29 1 -0.4850 0.8400 -0.0004 30 1 -0.5573 -2.0511 -0.8852 31 1 -0.5557 -2.0802 0.9000 32 1 -1.2865 -4.2550 -0.6973 33 1 -0.6665 -4.4114 0.9796 34 1 0.4321 -6.5676 0.4242 35 1 2.0839 -6.4501 -0.3202 36 1 -2.4081 -7.5322 -7.7858 37 1 -3.2507 -9.8005 -7.4628 38 1 -2.9250 -10.9686 -5.3254 39 1 -1.7465 -9.8744 -3.4811 40 1 1.9166 -4.9339 -2.4614 41 1 0.1916 -4.3957 -2.6447 42 1 2.1982 -4.0319 1.0157 43 1 2.8179 -3.7505 -0.6406 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001073400140.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:06:37 Heat of formation + Delta-G solvation = 107.269472 kcal Electronic energy + Delta-G solvation = -27045.423687 eV Core-core repulsion = 23286.419177 eV Total energy + Delta-G solvation = -3759.004510 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.53053 -41.84891 -39.47566 -38.71582 -37.30197 -34.13732 -33.59450 -31.54146 -31.22644 -30.83703 -30.04033 -27.58685 -27.17036 -25.82580 -24.55346 -23.85550 -23.23105 -22.12696 -20.49844 -19.72350 -19.10676 -18.61225 -18.51616 -17.38668 -17.11710 -17.08111 -16.67801 -16.33772 -16.18968 -15.96059 -15.61262 -15.08728 -14.85683 -14.78334 -14.24257 -14.09047 -13.72669 -13.68255 -13.30839 -13.18698 -12.91208 -12.87998 -12.72481 -12.34111 -12.18513 -12.06741 -12.02861 -11.92344 -11.82591 -11.69475 -11.24865 -11.22204 -11.08082 -10.65235 -9.82245 -9.80823 -9.11201 -8.84315 -7.79977 -5.14916 -0.24238 0.34529 0.81942 1.48867 1.51767 1.53489 1.57852 1.84792 2.15496 2.53242 2.79448 3.05125 3.27927 3.41800 3.45779 3.56166 3.62630 3.82240 4.04187 4.08276 4.11371 4.21488 4.38601 4.44940 4.47400 4.56855 4.62369 4.69670 4.72731 4.81884 4.85984 4.94346 5.02207 5.05617 5.17471 5.20322 5.21556 5.45928 5.51091 5.55944 5.68435 5.80090 5.83083 6.07777 6.23189 6.54115 6.64889 7.01057 7.14299 7.82090 8.46854 9.30426 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.021233 B = 0.002787 C = 0.002575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1318.393790 B =10045.093109 C =10871.875005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C -0.069 4.069 3 Si 0.977 3.023 4 H -0.276 1.276 5 H -0.299 1.299 6 H -0.277 1.277 7 C -0.235 4.235 8 H 0.087 0.913 9 N -0.625 5.625 10 C 0.192 3.808 11 C -0.102 4.102 12 C -0.100 4.100 13 C 0.130 3.870 14 N -0.631 5.631 15 C 0.627 3.373 16 O -0.568 6.568 17 C -0.025 4.025 18 N -0.205 5.205 19 N -0.399 5.399 20 H 0.462 0.538 21 C 0.054 3.946 22 C -0.113 4.113 23 C -0.080 4.080 24 C -0.129 4.129 25 C -0.074 4.074 26 C -0.137 4.137 27 C 0.135 3.865 28 C 0.153 3.847 29 H 0.244 0.756 30 H 0.009 0.991 31 H 0.006 0.994 32 H 0.062 0.938 33 H 0.077 0.923 34 H 0.085 0.915 35 H 0.115 0.885 36 H 0.163 0.837 37 H 0.171 0.829 38 H 0.156 0.844 39 H 0.122 0.878 40 H 0.102 0.898 41 H 0.073 0.927 42 H 0.040 0.960 43 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.579 -18.914 -15.129 24.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.603 5.603 2 C -0.262 4.262 3 Si 0.805 3.195 4 H -0.202 1.202 5 H -0.225 1.225 6 H -0.204 1.204 7 C -0.364 4.364 8 H 0.105 0.895 9 N -0.351 5.351 10 C 0.067 3.933 11 C -0.140 4.140 12 C -0.102 4.102 13 C 0.009 3.991 14 N -0.364 5.364 15 C 0.416 3.584 16 O -0.446 6.446 17 C -0.195 4.195 18 N -0.037 5.037 19 N -0.122 5.122 20 H 0.311 0.689 21 C -0.059 4.059 22 C -0.134 4.134 23 C -0.100 4.100 24 C -0.148 4.148 25 C -0.095 4.095 26 C -0.145 4.145 27 C 0.013 3.987 28 C 0.028 3.972 29 H 0.054 0.946 30 H 0.028 0.972 31 H 0.024 0.976 32 H 0.081 0.919 33 H 0.096 0.904 34 H 0.104 0.896 35 H 0.133 0.867 36 H 0.181 0.819 37 H 0.188 0.812 38 H 0.174 0.826 39 H 0.140 0.860 40 H 0.120 0.880 41 H 0.091 0.909 42 H 0.057 0.943 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -3.376 -18.354 -14.884 23.871 hybrid contribution -0.056 1.094 -0.037 1.096 sum -3.432 -17.260 -14.922 23.073 Atomic orbital electron populations 1.70190 1.06337 1.25119 1.58690 1.25629 0.96523 1.00995 1.03019 0.85177 0.77070 0.78989 0.78247 1.20213 1.22546 1.20351 1.19443 0.91121 0.83508 1.42324 0.89485 1.44816 1.02095 1.01143 1.87087 1.20881 0.84065 0.90796 0.97557 1.22253 0.95477 0.95565 1.00732 1.22029 0.97639 0.94394 0.96149 1.22880 1.00137 0.92041 0.84077 1.49588 1.53592 1.15974 1.17264 1.16317 0.77549 0.81661 0.82910 1.90741 1.59618 1.26780 1.67446 1.22567 1.08613 0.92660 0.95618 1.72958 1.13552 1.23494 0.93690 1.43174 1.44252 1.14022 1.10705 0.68913 1.19539 1.01553 0.87516 0.97309 1.20285 0.99582 0.95940 0.97590 1.21242 0.97412 0.93384 0.98006 1.21230 0.99178 1.01644 0.92754 1.20475 0.96643 0.91982 1.00375 1.19702 1.04283 0.97031 0.93440 1.22848 1.00610 0.79185 0.96102 1.21303 0.94092 0.83537 0.98296 0.94637 0.97248 0.97599 0.91917 0.90419 0.89624 0.86746 0.81906 0.81169 0.82626 0.85964 0.88016 0.90893 0.94256 0.92466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.47 10.30 21.65 0.22 -57.25 16 2 C -0.07 -3.89 5.49 84.86 0.47 -3.43 16 3 Si 0.98 45.36 29.55 68.60 2.03 47.39 16 4 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 5 H -0.30 -14.15 7.11 99.48 0.71 -13.45 16 6 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 7 C -0.23 -12.80 10.28 84.03 0.86 -11.94 16 8 H 0.09 4.46 7.83 -2.91 -0.02 4.43 16 9 N -0.62 -31.03 3.41 -693.46 -2.36 -33.39 16 10 C 0.19 9.48 5.39 86.81 0.47 9.95 16 11 C -0.10 -3.82 6.40 31.32 0.20 -3.62 16 12 C -0.10 -3.26 1.06 -52.62 -0.06 -3.32 16 13 C 0.13 3.57 8.03 83.67 0.67 4.25 16 14 N -0.63 -19.70 3.70 -863.89 -3.19 -22.89 16 15 C 0.63 21.54 8.06 86.65 0.70 22.24 16 16 O -0.57 -21.83 17.17 -4.06 -0.07 -21.90 16 17 C -0.03 -0.79 7.29 43.86 0.32 -0.47 16 18 N -0.21 -5.75 10.67 -44.89 -0.48 -6.23 16 19 N -0.40 -8.23 6.85 -51.59 -0.35 -8.58 16 20 H 0.46 5.86 8.96 -220.03 -1.97 3.89 16 21 C 0.05 1.12 7.38 39.18 0.29 1.41 16 22 C -0.11 -1.49 10.03 22.12 0.22 -1.27 16 23 C -0.08 -0.90 9.96 22.06 0.22 -0.68 16 24 C -0.13 -1.97 9.98 22.07 0.22 -1.75 16 25 C -0.07 -1.75 9.87 22.14 0.22 -1.53 16 26 C -0.14 -3.74 6.34 -20.14 -0.13 -3.87 16 27 C 0.13 4.17 7.14 83.76 0.60 4.77 16 28 C 0.15 5.71 6.70 86.22 0.58 6.28 16 29 H 0.24 14.45 8.31 -92.71 -0.77 13.68 16 30 H 0.01 0.52 7.38 -2.39 -0.02 0.50 16 31 H 0.01 0.32 7.49 -2.39 -0.02 0.31 16 32 H 0.06 2.32 8.07 -2.39 -0.02 2.30 16 33 H 0.08 2.69 8.14 -2.39 -0.02 2.68 16 34 H 0.09 2.30 8.13 -2.39 -0.02 2.28 16 35 H 0.11 2.56 8.14 -2.39 -0.02 2.54 16 36 H 0.16 0.98 8.06 -2.91 -0.02 0.95 16 37 H 0.17 0.60 8.06 -2.91 -0.02 0.58 16 38 H 0.16 1.47 8.06 -2.91 -0.02 1.44 16 39 H 0.12 3.13 7.65 -2.91 -0.02 3.11 16 40 H 0.10 2.83 8.06 -2.39 -0.02 2.81 16 41 H 0.07 2.49 7.55 -2.39 -0.02 2.47 16 42 H 0.04 1.41 8.14 -2.38 -0.02 1.39 16 43 H 0.06 1.98 8.00 -2.39 -0.02 1.96 16 Total: -1.00 -75.95 358.42 0.71 -75.24 By element: Atomic # 1 Polarization: 11.52 SS G_CDS: -0.93 Total: 10.59 kcal Atomic # 6 Polarization: 11.17 SS G_CDS: 5.85 Total: 17.02 kcal Atomic # 7 Polarization: -122.17 SS G_CDS: -6.17 Total: -128.34 kcal Atomic # 8 Polarization: -21.83 SS G_CDS: -0.07 Total: -21.90 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 2.03 Total: 47.39 kcal Total: -75.95 0.71 -75.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073400140.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 182.507 kcal (2) G-P(sol) polarization free energy of solvation -75.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.238 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds