Wall clock time and date at job start Tue Mar 31 2020 14:56:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 119.99848 * 2 1 4 4 H 1.48500 * 109.47188 * 270.00653 * 3 2 1 5 5 H 1.48497 * 109.47090 * 30.00527 * 3 2 1 6 6 H 1.48499 * 109.47122 * 150.00599 * 3 2 1 7 7 C 1.38812 * 120.00057 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99942 * 179.97438 * 7 2 1 9 9 N 1.36941 * 119.99917 * 359.97438 * 7 2 1 10 10 C 1.48401 * 125.06989 * 179.97438 * 9 7 2 11 11 C 1.53519 * 106.16286 * 197.28523 * 10 9 7 12 12 H 1.09002 * 112.80614 * 211.14380 * 11 10 9 13 13 C 1.54786 * 109.68772 * 84.43456 * 11 10 9 14 14 C 1.54944 * 101.45422 * 212.19656 * 13 11 10 15 15 N 1.47345 * 104.90494 * 37.25603 * 14 13 11 16 16 C 1.34775 * 125.52598 * 156.71944 * 15 14 13 17 17 O 1.21647 * 119.99567 * 180.02562 * 16 15 14 18 18 C 1.47273 * 120.00223 * 0.02562 * 16 15 14 19 19 C 1.38435 * 120.03034 * 180.02562 * 18 16 15 20 20 C 1.40659 * 118.26750 * 180.02562 * 19 18 16 21 21 C 1.38254 * 133.39787 * 180.02562 * 20 19 18 22 22 C 1.39684 * 106.99864 * 179.97438 * 21 20 19 23 23 C 1.35644 * 108.08033 * 0.02562 * 22 21 20 24 24 N 1.35916 * 109.05923 * 359.97438 * 23 22 21 25 25 C 1.36903 * 132.42598 * 179.97438 * 24 23 22 26 26 N 1.29798 * 121.47814 * 179.68876 * 25 24 23 27 27 C 1.47262 * 108.95205 * 336.73603 * 15 14 13 28 28 H 1.08996 * 111.94782 * 236.64558 * 27 15 14 29 29 C 1.46493 * 125.28736 * 359.97438 * 9 7 2 30 30 H 0.97001 * 120.00480 * 359.97438 * 1 2 3 31 31 H 1.09000 * 110.68480 * 78.03683 * 10 9 7 32 32 H 1.08998 * 110.01780 * 316.17287 * 10 9 7 33 33 H 1.09007 * 111.02797 * 330.23842 * 13 11 10 34 34 H 1.08997 * 111.02769 * 94.14942 * 13 11 10 35 35 H 1.09006 * 110.35439 * 156.11344 * 14 13 11 36 36 H 1.09001 * 110.35342 * 278.39403 * 14 13 11 37 37 H 1.08000 * 120.86765 * 0.02562 * 19 18 16 38 38 H 1.08008 * 126.50587 * 359.97438 * 21 20 19 39 39 H 1.07999 * 125.95974 * 179.97438 * 22 21 20 40 40 H 1.07998 * 125.47327 * 180.02562 * 23 22 21 41 41 H 1.07997 * 119.25990 * 0.04898 * 25 24 23 42 42 H 1.09005 * 109.71207 * 58.32316 * 29 9 7 43 43 H 1.08994 * 109.71370 * 297.77477 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4975 2.0465 -1.4001 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4402 0.6999 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 1.9511 -3.7338 -0.0016 11 6 0.8541 -4.7146 -0.4393 12 1 0.9681 -5.7025 0.0069 13 6 0.7800 -4.7582 -1.9848 14 6 -0.7293 -5.0245 -2.2131 15 7 -1.4140 -4.2474 -1.1650 16 6 -2.6888 -3.8135 -1.2187 17 8 -3.1540 -3.1768 -0.2924 18 6 -3.5187 -4.1102 -2.3986 19 6 -4.8281 -3.6644 -2.4545 20 6 -5.5874 -3.9693 -3.5986 21 6 -6.8872 -3.6903 -3.9782 22 6 -7.0757 -4.2608 -5.2392 23 6 -5.9182 -4.8661 -5.6048 24 7 -4.9990 -4.6991 -4.6176 25 6 -3.6983 -5.1060 -4.4883 26 7 -2.9995 -4.8173 -3.4332 27 6 -0.4794 -4.0213 -0.0497 28 1 -0.8743 -4.3954 0.8949 29 6 -0.1332 -2.5231 0.0005 30 1 -0.4851 0.8400 0.0004 31 1 2.3058 -3.9943 0.9956 32 1 2.7778 -3.7604 -0.7115 33 1 1.0785 -3.8034 -2.4178 34 1 1.3854 -5.5726 -2.3826 35 1 -1.0305 -4.6763 -3.2011 36 1 -0.9479 -6.0865 -2.1016 37 1 -5.2556 -3.0972 -1.6408 38 1 -7.6183 -3.1365 -3.4079 39 1 -7.9848 -4.2265 -5.8213 40 1 -5.7531 -5.3952 -6.5317 41 1 -3.2416 -5.6751 -5.2844 42 1 -0.5496 -2.0200 -0.8722 43 1 -0.5426 -2.0812 0.9089 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001075934877.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:56:54 Heat of formation + Delta-G solvation = 107.408240 kcal Electronic energy + Delta-G solvation = -27785.729613 eV Core-core repulsion = 24026.731120 eV Total energy + Delta-G solvation = -3758.998493 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.55061 -40.04259 -38.19662 -37.14816 -34.74291 -33.25554 -32.21963 -31.12757 -30.54328 -29.01254 -28.18107 -26.66607 -24.77669 -24.23152 -23.60977 -22.13028 -21.41089 -20.50168 -19.77251 -19.09564 -18.28279 -17.23990 -16.70316 -16.12568 -16.06577 -15.85505 -15.17462 -15.07127 -14.51139 -14.46849 -14.11076 -13.65784 -13.37022 -13.08800 -12.79726 -12.72354 -12.64851 -12.47774 -12.30875 -12.07039 -11.65694 -11.43364 -11.07476 -10.92262 -10.74335 -10.73053 -10.72101 -10.21660 -10.02757 -9.86427 -9.79581 -9.64852 -9.51408 -9.17938 -8.52090 -8.12791 -7.65488 -6.74987 -5.60446 -2.96809 0.32375 1.00125 2.33756 2.63617 2.84351 3.26555 3.44649 3.48984 3.52078 3.78589 3.82339 4.35623 4.45254 4.55503 4.59364 4.94318 4.97046 5.04187 5.15596 5.24833 5.35234 5.41730 5.55528 5.58519 5.66498 5.77267 5.86444 5.88984 5.97350 6.01135 6.14182 6.20043 6.26497 6.34777 6.48699 6.50431 6.65842 6.68279 6.74684 6.88521 6.93073 7.45360 7.64590 7.69902 7.97123 8.02262 8.35641 8.56171 9.30239 9.89908 10.54066 11.48844 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.016148 B = 0.003490 C = 0.003138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1733.503385 B = 8020.245560 C = 8921.602005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.007 4.007 3 Si 0.910 3.090 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.232 4.232 8 H 0.078 0.922 9 N -0.604 5.604 10 C 0.142 3.858 11 C -0.111 4.111 12 H 0.086 0.914 13 C -0.125 4.125 14 C 0.109 3.891 15 N -0.588 5.588 16 C 0.586 3.414 17 O -0.526 6.526 18 C 0.024 3.976 19 C -0.043 4.043 20 C 0.031 3.969 21 C -0.175 4.175 22 C -0.147 4.147 23 C -0.033 4.033 24 N -0.387 5.387 25 C 0.299 3.701 26 N -0.458 5.458 27 C 0.114 3.886 28 H 0.080 0.920 29 C 0.183 3.817 30 H 0.252 0.748 31 H 0.020 0.980 32 H 0.041 0.959 33 H 0.084 0.916 34 H 0.074 0.926 35 H 0.096 0.904 36 H 0.059 0.941 37 H 0.164 0.836 38 H 0.151 0.849 39 H 0.151 0.849 40 H 0.175 0.825 41 H 0.206 0.794 42 H 0.055 0.945 43 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.478 -15.169 -12.508 22.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.204 4.204 3 Si 0.741 3.259 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.360 4.360 8 H 0.096 0.904 9 N -0.332 5.332 10 C 0.016 3.984 11 C -0.131 4.131 12 H 0.104 0.896 13 C -0.164 4.164 14 C -0.014 4.014 15 N -0.319 5.319 16 C 0.373 3.627 17 O -0.402 6.402 18 C -0.094 4.094 19 C -0.065 4.065 20 C -0.074 4.074 21 C -0.201 4.201 22 C -0.170 4.170 23 C -0.164 4.164 24 N -0.060 5.060 25 C 0.017 3.983 26 N -0.170 5.170 27 C 0.011 3.989 28 H 0.098 0.902 29 C 0.057 3.943 30 H 0.063 0.937 31 H 0.038 0.962 32 H 0.059 0.941 33 H 0.102 0.898 34 H 0.093 0.907 35 H 0.114 0.886 36 H 0.077 0.923 37 H 0.182 0.818 38 H 0.169 0.831 39 H 0.168 0.832 40 H 0.192 0.808 41 H 0.223 0.777 42 H 0.073 0.927 43 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -9.715 -14.848 -11.750 21.281 hybrid contribution -0.351 1.104 -0.201 1.176 sum -10.067 -13.744 -11.951 20.810 Atomic orbital electron populations 1.70008 1.04731 1.24974 1.56453 1.24844 0.95680 0.97656 1.02236 0.86147 0.78558 0.83750 0.77456 1.21723 1.21702 1.20712 1.19016 0.90358 0.82313 1.44334 0.90418 1.44555 1.01258 0.99819 1.87543 1.21401 0.93791 0.85646 0.97547 1.22946 0.95464 0.98652 0.96038 0.89588 1.22833 0.95160 1.02790 0.95571 1.22532 0.91328 0.94789 0.92774 1.48315 1.10396 1.53108 1.20128 1.16944 0.80675 0.79868 0.85257 1.90866 1.72079 1.39770 1.37530 1.20922 0.93226 1.00826 0.94398 1.21694 0.92360 0.96324 0.96139 1.18913 0.94892 1.02833 0.90731 1.21157 0.94059 1.06964 0.97929 1.21037 0.98019 1.01111 0.96800 1.21942 0.89052 1.10176 0.95272 1.43189 1.10653 1.36537 1.15611 1.24912 0.79273 0.96592 0.97521 1.68502 1.33248 1.14842 1.00450 1.22922 0.87386 1.00051 0.88565 0.90173 1.21213 0.84019 0.87100 1.01927 0.93734 0.96180 0.94127 0.89783 0.90735 0.88582 0.92324 0.81817 0.83115 0.83174 0.80789 0.77728 0.92657 0.93765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.45 10.23 55.49 0.57 -27.88 16 2 C -0.01 -0.22 5.48 -17.43 -0.10 -0.31 16 3 Si 0.91 22.84 29.55 -169.99 -5.02 17.81 16 4 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 5 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 6 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 7 C -0.23 -6.63 10.25 -15.06 -0.15 -6.79 16 8 H 0.08 2.12 7.83 -52.48 -0.41 1.71 16 9 N -0.60 -15.88 3.42 -170.85 -0.58 -16.46 16 10 C 0.14 2.93 6.65 -2.73 -0.02 2.91 16 11 C -0.11 -1.93 3.92 -88.21 -0.35 -2.27 16 12 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 13 C -0.13 -1.94 6.31 -24.76 -0.16 -2.10 16 14 C 0.11 1.65 5.88 -2.55 -0.02 1.63 16 15 N -0.59 -11.21 2.83 -163.11 -0.46 -11.67 16 16 C 0.59 11.75 7.52 -12.59 -0.09 11.65 16 17 O -0.53 -12.32 16.42 5.24 0.09 -12.24 16 18 C 0.02 0.39 6.74 -82.43 -0.56 -0.16 16 19 C -0.04 -0.63 9.72 -38.60 -0.38 -1.01 16 20 C 0.03 0.39 6.78 -83.95 -0.57 -0.18 16 21 C -0.18 -1.83 10.98 -39.04 -0.43 -2.25 16 22 C -0.15 -1.22 10.80 -39.97 -0.43 -1.65 16 23 C -0.03 -0.26 11.61 -16.67 -0.19 -0.46 16 24 N -0.39 -4.06 2.95 -62.17 -0.18 -4.24 16 25 C 0.30 2.95 12.16 -89.23 -1.09 1.86 16 26 N -0.46 -6.12 6.62 -10.43 -0.07 -6.19 16 27 C 0.11 2.36 3.81 -65.87 -0.25 2.10 16 28 H 0.08 1.64 8.14 -51.93 -0.42 1.22 16 29 C 0.18 4.79 4.63 -3.60 -0.02 4.78 16 30 H 0.25 7.68 8.31 -40.82 -0.34 7.34 16 31 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.04 0.80 7.94 -51.93 -0.41 0.39 16 33 H 0.08 1.56 7.94 -51.93 -0.41 1.15 16 34 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.10 1.43 5.89 -51.93 -0.31 1.12 16 36 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.16 2.37 7.66 -52.49 -0.40 1.96 16 38 H 0.15 1.31 8.06 -52.48 -0.42 0.88 16 39 H 0.15 0.83 8.06 -52.49 -0.42 0.41 16 40 H 0.17 0.72 8.06 -52.49 -0.42 0.30 16 41 H 0.21 1.01 8.06 -52.49 -0.42 0.59 16 42 H 0.06 1.65 6.88 -51.93 -0.36 1.29 16 43 H 0.04 1.33 7.51 -51.93 -0.39 0.94 16 LS Contribution 349.51 15.07 5.27 5.27 Total: -1.00 -36.31 349.51 -10.82 -47.13 By element: Atomic # 1 Polarization: 6.35 SS G_CDS: -5.63 Total: 0.72 kcal Atomic # 6 Polarization: 12.54 SS G_CDS: -4.79 Total: 7.76 kcal Atomic # 7 Polarization: -65.72 SS G_CDS: -0.73 Total: -66.45 kcal Atomic # 8 Polarization: -12.32 SS G_CDS: 0.09 Total: -12.24 kcal Atomic # 14 Polarization: 22.84 SS G_CDS: -5.02 Total: 17.81 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -36.31 -10.82 -47.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075934877.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.535 kcal (2) G-P(sol) polarization free energy of solvation -36.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.127 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds