Wall clock time and date at job start Tue Mar 31 2020 14:56:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 119.99848 * 2 1 4 4 H 1.48500 * 109.47188 * 270.00653 * 3 2 1 5 5 H 1.48497 * 109.47090 * 30.00527 * 3 2 1 6 6 H 1.48499 * 109.47122 * 150.00599 * 3 2 1 7 7 C 1.38812 * 120.00057 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99942 * 179.97438 * 7 2 1 9 9 N 1.36941 * 119.99917 * 359.97438 * 7 2 1 10 10 C 1.48401 * 125.06989 * 179.97438 * 9 7 2 11 11 C 1.53519 * 106.16286 * 197.28523 * 10 9 7 12 12 H 1.09002 * 112.80614 * 211.14380 * 11 10 9 13 13 C 1.54786 * 109.68772 * 84.43456 * 11 10 9 14 14 C 1.54944 * 101.45422 * 212.19656 * 13 11 10 15 15 N 1.47345 * 104.90494 * 37.25603 * 14 13 11 16 16 C 1.34775 * 125.52598 * 156.71944 * 15 14 13 17 17 O 1.21647 * 119.99567 * 180.02562 * 16 15 14 18 18 C 1.47273 * 120.00223 * 0.02562 * 16 15 14 19 19 C 1.38435 * 120.03034 * 180.02562 * 18 16 15 20 20 C 1.40659 * 118.26750 * 180.02562 * 19 18 16 21 21 C 1.38254 * 133.39787 * 180.02562 * 20 19 18 22 22 C 1.39684 * 106.99864 * 179.97438 * 21 20 19 23 23 C 1.35644 * 108.08033 * 0.02562 * 22 21 20 24 24 N 1.35916 * 109.05923 * 359.97438 * 23 22 21 25 25 C 1.36903 * 132.42598 * 179.97438 * 24 23 22 26 26 N 1.29798 * 121.47814 * 179.68876 * 25 24 23 27 27 C 1.47262 * 108.95205 * 336.73603 * 15 14 13 28 28 H 1.08996 * 111.94782 * 236.64558 * 27 15 14 29 29 C 1.46493 * 125.28736 * 359.97438 * 9 7 2 30 30 H 0.97001 * 120.00480 * 359.97438 * 1 2 3 31 31 H 1.09000 * 110.68480 * 78.03683 * 10 9 7 32 32 H 1.08998 * 110.01780 * 316.17287 * 10 9 7 33 33 H 1.09007 * 111.02797 * 330.23842 * 13 11 10 34 34 H 1.08997 * 111.02769 * 94.14942 * 13 11 10 35 35 H 1.09006 * 110.35439 * 156.11344 * 14 13 11 36 36 H 1.09001 * 110.35342 * 278.39403 * 14 13 11 37 37 H 1.08000 * 120.86765 * 0.02562 * 19 18 16 38 38 H 1.08008 * 126.50587 * 359.97438 * 21 20 19 39 39 H 1.07999 * 125.95974 * 179.97438 * 22 21 20 40 40 H 1.07998 * 125.47327 * 180.02562 * 23 22 21 41 41 H 1.07997 * 119.25990 * 0.04898 * 25 24 23 42 42 H 1.09005 * 109.71207 * 58.32316 * 29 9 7 43 43 H 1.08994 * 109.71370 * 297.77477 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4975 2.0465 -1.4001 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4402 0.6999 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 1.9511 -3.7338 -0.0016 11 6 0.8541 -4.7146 -0.4393 12 1 0.9681 -5.7025 0.0069 13 6 0.7800 -4.7582 -1.9848 14 6 -0.7293 -5.0245 -2.2131 15 7 -1.4140 -4.2474 -1.1650 16 6 -2.6888 -3.8135 -1.2187 17 8 -3.1540 -3.1768 -0.2924 18 6 -3.5187 -4.1102 -2.3986 19 6 -4.8281 -3.6644 -2.4545 20 6 -5.5874 -3.9693 -3.5986 21 6 -6.8872 -3.6903 -3.9782 22 6 -7.0757 -4.2608 -5.2392 23 6 -5.9182 -4.8661 -5.6048 24 7 -4.9990 -4.6991 -4.6176 25 6 -3.6983 -5.1060 -4.4883 26 7 -2.9995 -4.8173 -3.4332 27 6 -0.4794 -4.0213 -0.0497 28 1 -0.8743 -4.3954 0.8949 29 6 -0.1332 -2.5231 0.0005 30 1 -0.4851 0.8400 0.0004 31 1 2.3058 -3.9943 0.9956 32 1 2.7778 -3.7604 -0.7115 33 1 1.0785 -3.8034 -2.4178 34 1 1.3854 -5.5726 -2.3826 35 1 -1.0305 -4.6763 -3.2011 36 1 -0.9479 -6.0865 -2.1016 37 1 -5.2556 -3.0972 -1.6408 38 1 -7.6183 -3.1365 -3.4079 39 1 -7.9848 -4.2265 -5.8213 40 1 -5.7531 -5.3952 -6.5317 41 1 -3.2416 -5.6751 -5.2844 42 1 -0.5496 -2.0200 -0.8722 43 1 -0.5426 -2.0812 0.9089 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001075934877.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:56:53 Heat of formation + Delta-G solvation = 84.870644 kcal Electronic energy + Delta-G solvation = -27786.706916 eV Core-core repulsion = 24026.731120 eV Total energy + Delta-G solvation = -3759.975796 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.34764 -41.52408 -39.58314 -38.29020 -36.55457 -34.22335 -34.03761 -32.27705 -31.94583 -30.57433 -29.46305 -28.24642 -26.53374 -25.41998 -24.73689 -23.32456 -22.47064 -22.02692 -21.11420 -20.47696 -19.42617 -18.87577 -18.26496 -17.36364 -17.24903 -16.82260 -16.70400 -16.30229 -16.15871 -15.73705 -15.27824 -15.24392 -14.99656 -14.51442 -14.24550 -13.87218 -13.66285 -13.51080 -13.37719 -13.32230 -13.30364 -13.19152 -12.90476 -12.72587 -12.61990 -12.17608 -11.98842 -11.87287 -11.70666 -11.57436 -11.46972 -11.30582 -10.87131 -10.67664 -9.91022 -9.65958 -8.93115 -8.54728 -7.84627 -5.24204 -0.67147 0.19245 1.40087 1.43959 1.52982 1.60974 1.62348 1.90461 1.96932 2.46664 2.62244 2.89663 3.31562 3.37005 3.57919 3.62271 3.66962 3.74967 3.89927 4.01168 4.06632 4.28799 4.34186 4.38980 4.46786 4.51197 4.60153 4.61873 4.69375 4.83999 4.91882 4.98868 5.10947 5.15508 5.19596 5.21893 5.33084 5.42565 5.49841 5.51012 5.58785 5.74197 5.77265 6.15516 6.22113 6.48726 6.63686 7.03733 7.09935 7.75268 8.37411 9.23328 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.016148 B = 0.003490 C = 0.003138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1733.503385 B = 8020.245560 C = 8921.602005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.076 4.076 3 Si 0.982 3.018 4 H -0.284 1.284 5 H -0.300 1.300 6 H -0.261 1.261 7 C -0.239 4.239 8 H 0.092 0.908 9 N -0.625 5.625 10 C 0.134 3.866 11 C -0.093 4.093 12 H 0.134 0.866 13 C -0.116 4.116 14 C 0.111 3.889 15 N -0.592 5.592 16 C 0.572 3.428 17 O -0.585 6.585 18 C -0.007 4.007 19 C -0.047 4.047 20 C -0.015 4.015 21 C -0.168 4.168 22 C -0.157 4.157 23 C 0.002 3.998 24 N -0.398 5.398 25 C 0.321 3.679 26 N -0.481 5.481 27 C 0.114 3.886 28 H 0.075 0.925 29 C 0.207 3.793 30 H 0.241 0.759 31 H 0.031 0.969 32 H 0.058 0.942 33 H 0.046 0.954 34 H 0.125 0.875 35 H 0.101 0.899 36 H 0.091 0.909 37 H 0.144 0.856 38 H 0.158 0.842 39 H 0.183 0.817 40 H 0.225 0.775 41 H 0.263 0.737 42 H 0.006 0.994 43 H -0.018 1.018 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.810 -18.580 -16.450 26.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.604 5.604 2 C -0.268 4.268 3 Si 0.810 3.190 4 H -0.211 1.211 5 H -0.227 1.227 6 H -0.185 1.185 7 C -0.368 4.368 8 H 0.110 0.890 9 N -0.353 5.353 10 C 0.010 3.990 11 C -0.112 4.112 12 H 0.152 0.848 13 C -0.154 4.154 14 C -0.010 4.010 15 N -0.322 5.322 16 C 0.362 3.638 17 O -0.467 6.467 18 C -0.123 4.123 19 C -0.070 4.070 20 C -0.119 4.119 21 C -0.195 4.195 22 C -0.179 4.179 23 C -0.129 4.129 24 N -0.072 5.072 25 C 0.039 3.961 26 N -0.194 5.194 27 C 0.010 3.990 28 H 0.093 0.907 29 C 0.081 3.919 30 H 0.050 0.950 31 H 0.049 0.951 32 H 0.076 0.924 33 H 0.065 0.935 34 H 0.143 0.857 35 H 0.119 0.881 36 H 0.109 0.891 37 H 0.161 0.839 38 H 0.175 0.825 39 H 0.200 0.800 40 H 0.241 0.759 41 H 0.278 0.722 42 H 0.024 0.976 43 H 0.000 1.000 Dipole moment (debyes) X Y Z Total from point charges -8.982 -18.314 -15.701 25.741 hybrid contribution -0.743 2.121 0.860 2.407 sum -9.725 -16.193 -14.841 24.021 Atomic orbital electron populations 1.70336 1.06734 1.24868 1.58476 1.25822 0.96462 1.01657 1.02848 0.85016 0.77692 0.78736 0.77537 1.21101 1.22695 1.18522 1.19540 0.91211 0.83472 1.42572 0.89004 1.44882 1.01504 1.01730 1.87148 1.21694 0.95174 0.83482 0.98628 1.23014 0.91116 0.99335 0.97724 0.84820 1.22833 0.96024 1.02773 0.93780 1.22771 0.90514 0.95842 0.91835 1.48442 1.10048 1.53170 1.20543 1.17710 0.81254 0.78843 0.85986 1.90803 1.73435 1.42392 1.40030 1.20303 0.93115 1.04198 0.94675 1.21609 0.92440 0.96022 0.96879 1.18874 0.95951 1.05777 0.91277 1.21589 0.93304 1.05640 0.98930 1.21527 0.99710 1.00698 0.95924 1.22898 0.87663 1.07126 0.95242 1.43425 1.11297 1.36763 1.15685 1.25965 0.78744 0.94388 0.97028 1.68343 1.34078 1.16068 1.00920 1.22691 0.90098 0.96429 0.89824 0.90718 1.20669 0.84080 0.90508 0.96647 0.95004 0.95111 0.92362 0.93502 0.85680 0.88065 0.89065 0.83869 0.82457 0.79974 0.75887 0.72160 0.97582 0.99964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -64.23 10.23 21.65 0.22 -64.01 16 2 C -0.08 -4.64 5.48 84.86 0.47 -4.18 16 3 Si 0.98 48.80 29.55 68.60 2.03 50.83 16 4 H -0.28 -13.73 7.11 99.48 0.71 -13.02 16 5 H -0.30 -15.22 7.11 99.48 0.71 -14.51 16 6 H -0.26 -11.95 7.11 99.48 0.71 -11.24 16 7 C -0.24 -14.10 10.25 84.03 0.86 -13.24 16 8 H 0.09 5.02 7.83 -2.91 -0.02 5.00 16 9 N -0.63 -34.23 3.42 -694.45 -2.37 -36.60 16 10 C 0.13 5.41 6.65 86.19 0.57 5.99 16 11 C -0.09 -3.03 3.92 -9.23 -0.04 -3.07 16 12 H 0.13 3.23 8.14 -2.39 -0.02 3.21 16 13 C -0.12 -3.31 6.31 31.87 0.20 -3.11 16 14 C 0.11 3.21 5.88 86.88 0.51 3.72 16 15 N -0.59 -23.66 2.83 -788.20 -2.23 -25.89 16 16 C 0.57 25.19 7.52 86.62 0.65 25.84 16 17 O -0.59 -31.06 16.42 -4.18 -0.07 -31.13 16 18 C -0.01 -0.25 6.74 40.98 0.28 0.03 16 19 C -0.05 -1.50 9.72 22.91 0.22 -1.28 16 20 C -0.02 -0.38 6.78 38.69 0.26 -0.12 16 21 C -0.17 -3.27 10.98 22.62 0.25 -3.02 16 22 C -0.16 -1.96 10.80 22.02 0.24 -1.72 16 23 C 0.00 0.02 11.61 83.46 0.97 0.99 16 24 N -0.40 -7.12 2.95 -350.61 -1.04 -8.16 16 25 C 0.32 5.26 12.16 179.86 2.19 7.45 16 26 N -0.48 -12.43 6.62 -186.90 -1.24 -13.67 16 27 C 0.11 4.94 3.81 45.91 0.18 5.12 16 28 H 0.07 3.27 8.14 -2.39 -0.02 3.25 16 29 C 0.21 11.83 4.63 86.67 0.40 12.23 16 30 H 0.24 15.94 8.31 -92.71 -0.77 15.17 16 31 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.06 2.16 7.94 -2.39 -0.02 2.14 16 33 H 0.05 1.70 7.94 -2.38 -0.02 1.68 16 34 H 0.13 2.36 8.14 -2.39 -0.02 2.34 16 35 H 0.10 2.87 5.89 -2.38 -0.01 2.85 16 36 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 37 H 0.14 4.90 7.66 -2.91 -0.02 4.88 16 38 H 0.16 2.67 8.06 -2.91 -0.02 2.65 16 39 H 0.18 1.08 8.06 -2.91 -0.02 1.06 16 40 H 0.22 0.09 8.06 -2.91 -0.02 0.07 16 41 H 0.26 0.96 8.06 -2.91 -0.02 0.93 16 42 H 0.01 0.40 6.88 -2.38 -0.02 0.38 16 43 H -0.02 -1.21 7.51 -2.39 -0.02 -1.23 16 Total: -1.00 -92.70 349.51 4.54 -88.16 By element: Atomic # 1 Polarization: 7.83 SS G_CDS: 1.03 Total: 8.85 kcal Atomic # 6 Polarization: 23.40 SS G_CDS: 8.21 Total: 31.61 kcal Atomic # 7 Polarization: -141.67 SS G_CDS: -6.65 Total: -148.32 kcal Atomic # 8 Polarization: -31.06 SS G_CDS: -0.07 Total: -31.13 kcal Atomic # 14 Polarization: 48.80 SS G_CDS: 2.03 Total: 50.83 kcal Total: -92.70 4.54 -88.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075934877.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.030 kcal (2) G-P(sol) polarization free energy of solvation -92.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.160 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds