Wall clock time and date at job start Tue Mar 31 2020 14:59:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86802 * 119.99884 * 2 1 4 4 H 1.48501 * 109.47346 * 240.00285 * 3 2 1 5 5 H 1.48500 * 109.46998 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47635 * 119.99522 * 3 2 1 7 7 C 1.38812 * 120.00320 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99873 * 180.02562 * 7 2 1 9 9 N 1.36935 * 119.99908 * 0.02562 * 7 2 1 10 10 C 1.46703 * 125.32042 * 179.97438 * 9 7 2 11 11 C 1.54048 * 106.82721 * 161.84224 * 10 9 7 12 12 H 1.08997 * 113.43069 * 262.67403 * 11 10 9 13 13 C 1.55123 * 108.25472 * 135.80749 * 11 10 9 14 14 C 1.54850 * 101.77834 * 286.08923 * 13 11 10 15 15 N 1.47397 * 104.81219 * 322.82100 * 14 13 11 16 16 C 1.34778 * 125.58861 * 204.60991 * 15 14 13 17 17 O 1.21644 * 119.99796 * 184.15657 * 16 15 14 18 18 C 1.47164 * 120.00100 * 4.15380 * 16 15 14 19 19 C 1.38589 * 120.72693 * 324.30107 * 18 16 15 20 20 C 1.38925 * 121.36613 * 180.02562 * 19 18 16 21 21 C 1.35827 * 122.59536 * 0.02595 * 20 19 18 22 22 C 1.40839 * 120.55661 * 0.02562 * 21 20 19 23 23 C 1.38431 * 134.89715 * 179.97438 * 22 21 20 24 24 N 1.33892 * 107.84443 * 180.02562 * 23 22 21 25 25 H 0.96995 * 125.02156 * 180.02562 * 24 23 22 26 26 N 1.39981 * 109.96273 * 0.02562 * 24 23 22 27 27 C 1.31481 * 109.01633 * 0.02562 * 26 24 23 28 28 C 1.46729 * 108.82506 * 24.86525 * 15 14 13 29 29 H 1.08997 * 111.33621 * 235.86657 * 28 15 14 30 30 C 1.46626 * 125.32217 * 0.02797 * 9 7 2 31 31 H 0.96996 * 120.00168 * 0.02562 * 1 2 3 32 32 H 1.08999 * 109.98612 * 42.50041 * 10 9 7 33 33 H 1.08994 * 109.99132 * 281.18536 * 10 9 7 34 34 H 1.09005 * 110.95994 * 167.96900 * 13 11 10 35 35 H 1.08992 * 111.00328 * 44.23095 * 13 11 10 36 36 H 1.09004 * 110.37193 * 203.98505 * 14 13 11 37 37 H 1.09002 * 110.37318 * 81.65250 * 14 13 11 38 38 H 1.08000 * 119.31772 * 0.02562 * 19 18 16 39 39 H 1.07992 * 118.70462 * 180.02562 * 20 19 18 40 40 H 1.07996 * 119.72238 * 179.97438 * 21 20 19 41 41 H 1.07990 * 126.07684 * 0.05902 * 23 22 21 42 42 H 1.09002 * 109.75693 * 300.90149 * 30 9 7 43 43 H 1.09001 * 109.76106 * 61.60690 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7464 -0.0006 6 1 3.1039 1.6966 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0904 -1.2020 0.0010 9 7 1.3257 -2.3880 0.0005 10 6 1.9383 -3.7210 0.0005 11 6 0.8514 -4.7113 0.4600 12 1 0.9093 -4.9571 1.5204 13 6 0.9040 -5.9546 -0.4661 14 6 0.2762 -5.4042 -1.7702 15 7 -0.7923 -4.4945 -1.3193 16 6 -1.8845 -4.1534 -2.0315 17 8 -2.6668 -3.3331 -1.5900 18 6 -2.1306 -4.7733 -3.3434 19 6 -1.0774 -5.0807 -4.1901 20 6 -1.2945 -5.6655 -5.4314 21 6 -2.5364 -5.9694 -5.8899 22 6 -3.6752 -5.6967 -5.1074 23 6 -5.0383 -5.8740 -5.2707 24 7 -5.6466 -5.4150 -4.1698 25 1 -6.6050 -5.4190 -4.0206 26 7 -4.6951 -4.9284 -3.2657 27 6 -3.4962 -5.0754 -3.7851 28 6 -0.4691 -4.0163 0.0297 29 1 -1.2760 -4.2304 0.7304 30 6 -0.1343 -2.5241 -0.0006 31 1 -0.4850 0.8400 -0.0004 32 1 2.7801 -3.7442 0.6926 33 1 2.2744 -3.9766 -1.0043 34 1 0.3056 -6.7697 -0.0589 35 1 1.9325 -6.2742 -0.6329 36 1 -0.1429 -6.2177 -2.3624 37 1 1.0210 -4.8574 -2.3485 38 1 -0.0669 -4.8611 -3.8785 39 1 -0.4423 -5.8872 -6.0565 40 1 -2.6517 -6.4233 -6.8631 41 1 -5.5246 -6.3063 -6.1326 42 1 -0.5507 -2.0333 0.8791 43 1 -0.5457 -2.0730 -0.9035 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001076116461.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:59:23 Heat of formation + Delta-G solvation = 113.178369 kcal Electronic energy + Delta-G solvation = -27986.894914 eV Core-core repulsion = 24228.146633 eV Total energy + Delta-G solvation = -3758.748281 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.32358 -40.07692 -37.78598 -36.71318 -34.68831 -32.36676 -31.89279 -30.83063 -30.75599 -29.22137 -28.32661 -26.34503 -24.78948 -24.54545 -22.82591 -21.95697 -21.45289 -20.32332 -19.45564 -18.63438 -18.10175 -17.38398 -16.66466 -16.35416 -15.86132 -15.23063 -15.01930 -14.85281 -14.45447 -14.09804 -13.89181 -13.68685 -13.37945 -13.09211 -12.89980 -12.60773 -12.14651 -12.04358 -11.90919 -11.76209 -11.64633 -11.39138 -10.96339 -10.89726 -10.62641 -10.55454 -10.42425 -10.29770 -10.13957 -10.06867 -9.77279 -9.59727 -9.22440 -8.91007 -8.48108 -8.03822 -7.68306 -6.70477 -5.56812 -2.93299 0.33137 1.73438 2.19728 2.54020 3.24981 3.42203 3.47727 3.51195 3.54113 3.90441 4.13741 4.38776 4.58082 4.74240 4.83413 4.94003 5.04174 5.09782 5.21323 5.27497 5.33293 5.51167 5.58691 5.63607 5.70134 5.80417 5.84747 5.91532 5.96489 6.10356 6.24410 6.27227 6.30244 6.43441 6.45863 6.60412 6.66898 6.72084 6.75797 6.90888 6.97472 7.51535 7.67197 7.78610 8.02383 8.11552 8.40835 8.77587 9.33941 9.95284 10.59125 11.52594 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.015470 B = 0.003731 C = 0.003442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1809.562679 B = 7502.926792 C = 8133.541771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.005 4.005 3 Si 0.910 3.090 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.285 1.285 7 C -0.235 4.235 8 H 0.077 0.923 9 N -0.602 5.602 10 C 0.143 3.857 11 C -0.111 4.111 12 H 0.097 0.903 13 C -0.125 4.125 14 C 0.096 3.904 15 N -0.599 5.599 16 C 0.571 3.429 17 O -0.513 6.513 18 C -0.099 4.099 19 C -0.046 4.046 20 C -0.161 4.161 21 C -0.025 4.025 22 C -0.216 4.216 23 C 0.084 3.916 24 N -0.431 5.431 25 H 0.444 0.556 26 N -0.275 5.275 27 C 0.136 3.864 28 C 0.118 3.882 29 H 0.077 0.923 30 C 0.175 3.825 31 H 0.253 0.747 32 H 0.033 0.967 33 H 0.018 0.982 34 H 0.070 0.930 35 H 0.082 0.918 36 H 0.074 0.926 37 H 0.072 0.928 38 H 0.140 0.860 39 H 0.127 0.873 40 H 0.125 0.875 41 H 0.189 0.811 42 H 0.052 0.948 43 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.122 -19.285 -12.175 23.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.202 4.202 3 Si 0.740 3.260 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.364 4.364 8 H 0.095 0.905 9 N -0.329 5.329 10 C 0.016 3.984 11 C -0.131 4.131 12 H 0.116 0.884 13 C -0.163 4.163 14 C -0.027 4.027 15 N -0.333 5.333 16 C 0.359 3.641 17 O -0.388 6.388 18 C -0.105 4.105 19 C -0.068 4.068 20 C -0.181 4.181 21 C -0.046 4.046 22 C -0.226 4.226 23 C -0.073 4.073 24 N -0.131 5.131 25 H 0.288 0.712 26 N -0.101 5.101 27 C -0.022 4.022 28 C 0.015 3.985 29 H 0.095 0.905 30 C 0.050 3.950 31 H 0.064 0.936 32 H 0.052 0.948 33 H 0.035 0.965 34 H 0.089 0.911 35 H 0.101 0.899 36 H 0.092 0.908 37 H 0.090 0.910 38 H 0.157 0.843 39 H 0.145 0.855 40 H 0.142 0.858 41 H 0.206 0.794 42 H 0.070 0.930 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -7.389 -18.124 -10.904 22.404 hybrid contribution 0.351 0.656 -0.776 1.076 sum -7.037 -17.467 -11.680 22.160 Atomic orbital electron populations 1.69993 1.04745 1.25154 1.56119 1.24839 0.95645 0.97642 1.02104 0.86240 0.78419 0.83517 0.77776 1.21251 1.21651 1.21201 1.18947 0.90276 0.82392 1.44741 0.90548 1.44221 1.01509 0.99901 1.87276 1.21293 0.93881 0.85981 0.97217 1.23156 0.95885 0.94664 0.99354 0.88432 1.22770 1.01092 0.97365 0.95087 1.22542 0.90054 0.92728 0.97384 1.48254 1.21110 1.46593 1.17384 1.17488 0.80540 0.82150 0.83904 1.90872 1.45826 1.32017 1.70099 1.19874 0.88894 1.05494 0.96237 1.21537 0.98600 0.93495 0.93187 1.20356 0.97200 1.03689 0.96809 1.20220 0.90561 0.96059 0.97740 1.19579 0.93000 1.12358 0.97688 1.22711 0.92716 0.99197 0.92666 1.46507 1.10502 1.43634 1.12435 0.71221 1.77812 0.96929 1.22902 1.12453 1.21518 0.91664 0.96474 0.92539 1.22481 0.95782 0.98055 0.82206 0.90524 1.21143 0.84142 0.87453 1.02297 0.93619 0.94837 0.96483 0.91098 0.89948 0.90754 0.90974 0.84251 0.85484 0.85759 0.79433 0.93038 0.92553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.76 10.24 55.49 0.57 -28.19 16 2 C -0.01 -0.16 5.48 -17.43 -0.10 -0.25 16 3 Si 0.91 23.01 29.55 -169.99 -5.02 17.98 16 4 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 5 H -0.29 -7.45 7.11 56.52 0.40 -7.04 16 6 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 7 C -0.24 -6.78 10.25 -15.06 -0.15 -6.94 16 8 H 0.08 2.10 7.83 -52.48 -0.41 1.69 16 9 N -0.60 -15.93 3.38 -172.35 -0.58 -16.52 16 10 C 0.14 2.92 6.45 -3.38 -0.02 2.90 16 11 C -0.11 -1.90 4.35 -87.73 -0.38 -2.28 16 12 H 0.10 1.53 8.14 -51.93 -0.42 1.10 16 13 C -0.12 -1.61 6.35 -24.63 -0.16 -1.77 16 14 C 0.10 1.38 4.65 -2.58 -0.01 1.37 16 15 N -0.60 -11.47 2.99 -164.07 -0.49 -11.96 16 16 C 0.57 12.09 7.17 -12.64 -0.09 12.00 16 17 O -0.51 -13.24 16.62 5.24 0.09 -13.15 16 18 C -0.10 -1.71 5.69 -102.74 -0.58 -2.30 16 19 C -0.05 -0.62 7.87 -39.20 -0.31 -0.93 16 20 C -0.16 -1.69 9.83 -40.19 -0.39 -2.08 16 21 C -0.03 -0.25 10.02 -39.46 -0.40 -0.64 16 22 C -0.22 -2.58 6.34 -105.21 -0.67 -3.24 16 23 C 0.08 0.70 12.08 -16.58 -0.20 0.50 16 24 N -0.43 -4.41 7.18 30.86 0.22 -4.19 16 25 H 0.44 2.71 8.96 -182.69 -1.64 1.07 16 26 N -0.28 -4.59 12.67 34.36 0.44 -4.16 16 27 C 0.14 2.25 7.34 -80.98 -0.59 1.66 16 28 C 0.12 2.46 3.57 -66.61 -0.24 2.23 16 29 H 0.08 1.60 8.14 -51.93 -0.42 1.17 16 30 C 0.17 4.65 4.88 -4.00 -0.02 4.63 16 31 H 0.25 7.82 8.31 -40.82 -0.34 7.48 16 32 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.02 0.35 6.52 -51.93 -0.34 0.01 16 34 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.08 0.89 8.08 -51.93 -0.42 0.47 16 36 H 0.07 0.89 6.54 -51.93 -0.34 0.55 16 37 H 0.07 1.05 6.33 -51.93 -0.33 0.72 16 38 H 0.14 1.77 5.40 -52.49 -0.28 1.49 16 39 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 40 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 41 H 0.19 0.56 8.06 -52.49 -0.42 0.14 16 42 H 0.05 1.54 7.33 -51.93 -0.38 1.16 16 43 H 0.06 1.74 6.54 -51.93 -0.34 1.40 16 LS Contribution 344.84 15.07 5.20 5.20 Total: -1.00 -40.09 344.84 -10.47 -50.56 By element: Atomic # 1 Polarization: 6.16 SS G_CDS: -6.57 Total: -0.41 kcal Atomic # 6 Polarization: 9.16 SS G_CDS: -4.31 Total: 4.84 kcal Atomic # 7 Polarization: -65.17 SS G_CDS: 0.15 Total: -65.02 kcal Atomic # 8 Polarization: -13.24 SS G_CDS: 0.09 Total: -13.15 kcal Atomic # 14 Polarization: 23.01 SS G_CDS: -5.02 Total: 17.98 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -40.09 -10.47 -50.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076116461.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.742 kcal (2) G-P(sol) polarization free energy of solvation -40.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 123.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.564 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds