Wall clock time and date at job start Tue Mar 31 2020 14:59:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86802 * 119.99884 * 2 1 4 4 H 1.48501 * 109.47346 * 240.00285 * 3 2 1 5 5 H 1.48500 * 109.46998 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47635 * 119.99522 * 3 2 1 7 7 C 1.38812 * 120.00320 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99873 * 180.02562 * 7 2 1 9 9 N 1.36935 * 119.99908 * 0.02562 * 7 2 1 10 10 C 1.46703 * 125.32042 * 179.97438 * 9 7 2 11 11 C 1.54048 * 106.82721 * 161.84224 * 10 9 7 12 12 H 1.08997 * 113.43069 * 262.67403 * 11 10 9 13 13 C 1.55123 * 108.25472 * 135.80749 * 11 10 9 14 14 C 1.54850 * 101.77834 * 286.08923 * 13 11 10 15 15 N 1.47397 * 104.81219 * 322.82100 * 14 13 11 16 16 C 1.34778 * 125.58861 * 204.60991 * 15 14 13 17 17 O 1.21644 * 119.99796 * 184.15657 * 16 15 14 18 18 C 1.47164 * 120.00100 * 4.15380 * 16 15 14 19 19 C 1.38589 * 120.72693 * 324.30107 * 18 16 15 20 20 C 1.38925 * 121.36613 * 180.02562 * 19 18 16 21 21 C 1.35827 * 122.59536 * 0.02595 * 20 19 18 22 22 C 1.40839 * 120.55661 * 0.02562 * 21 20 19 23 23 C 1.38431 * 134.89715 * 179.97438 * 22 21 20 24 24 N 1.33892 * 107.84443 * 180.02562 * 23 22 21 25 25 H 0.96995 * 125.02156 * 180.02562 * 24 23 22 26 26 N 1.39981 * 109.96273 * 0.02562 * 24 23 22 27 27 C 1.31481 * 109.01633 * 0.02562 * 26 24 23 28 28 C 1.46729 * 108.82506 * 24.86525 * 15 14 13 29 29 H 1.08997 * 111.33621 * 235.86657 * 28 15 14 30 30 C 1.46626 * 125.32217 * 0.02797 * 9 7 2 31 31 H 0.96996 * 120.00168 * 0.02562 * 1 2 3 32 32 H 1.08999 * 109.98612 * 42.50041 * 10 9 7 33 33 H 1.08994 * 109.99132 * 281.18536 * 10 9 7 34 34 H 1.09005 * 110.95994 * 167.96900 * 13 11 10 35 35 H 1.08992 * 111.00328 * 44.23095 * 13 11 10 36 36 H 1.09004 * 110.37193 * 203.98505 * 14 13 11 37 37 H 1.09002 * 110.37318 * 81.65250 * 14 13 11 38 38 H 1.08000 * 119.31772 * 0.02562 * 19 18 16 39 39 H 1.07992 * 118.70462 * 180.02562 * 20 19 18 40 40 H 1.07996 * 119.72238 * 179.97438 * 21 20 19 41 41 H 1.07990 * 126.07684 * 0.05902 * 23 22 21 42 42 H 1.09002 * 109.75693 * 300.90149 * 30 9 7 43 43 H 1.09001 * 109.76106 * 61.60690 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7464 -0.0006 6 1 3.1039 1.6966 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0904 -1.2020 0.0010 9 7 1.3257 -2.3880 0.0005 10 6 1.9383 -3.7210 0.0005 11 6 0.8514 -4.7113 0.4600 12 1 0.9093 -4.9571 1.5204 13 6 0.9040 -5.9546 -0.4661 14 6 0.2762 -5.4042 -1.7702 15 7 -0.7923 -4.4945 -1.3193 16 6 -1.8845 -4.1534 -2.0315 17 8 -2.6668 -3.3331 -1.5900 18 6 -2.1306 -4.7733 -3.3434 19 6 -1.0774 -5.0807 -4.1901 20 6 -1.2945 -5.6655 -5.4314 21 6 -2.5364 -5.9694 -5.8899 22 6 -3.6752 -5.6967 -5.1074 23 6 -5.0383 -5.8740 -5.2707 24 7 -5.6466 -5.4150 -4.1698 25 1 -6.6050 -5.4190 -4.0206 26 7 -4.6951 -4.9284 -3.2657 27 6 -3.4962 -5.0754 -3.7851 28 6 -0.4691 -4.0163 0.0297 29 1 -1.2760 -4.2304 0.7304 30 6 -0.1343 -2.5241 -0.0006 31 1 -0.4850 0.8400 -0.0004 32 1 2.7801 -3.7442 0.6926 33 1 2.2744 -3.9766 -1.0043 34 1 0.3056 -6.7697 -0.0589 35 1 1.9325 -6.2742 -0.6329 36 1 -0.1429 -6.2177 -2.3624 37 1 1.0210 -4.8574 -2.3485 38 1 -0.0669 -4.8611 -3.8785 39 1 -0.4423 -5.8872 -6.0565 40 1 -2.6517 -6.4233 -6.8631 41 1 -5.5246 -6.3063 -6.1326 42 1 -0.5507 -2.0333 0.8791 43 1 -0.5457 -2.0730 -0.9035 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001076116461.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:59:23 Heat of formation + Delta-G solvation = 82.067384 kcal Electronic energy + Delta-G solvation = -27988.243987 eV Core-core repulsion = 24228.146633 eV Total energy + Delta-G solvation = -3760.097355 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.24983 -41.54180 -39.29151 -37.77974 -36.51274 -34.04722 -33.00345 -32.46139 -31.86873 -30.56972 -29.67896 -27.96805 -26.62519 -25.73342 -24.07951 -23.14059 -22.60248 -21.96003 -20.85244 -19.89077 -19.15949 -18.85731 -18.30734 -17.66137 -17.03322 -16.85735 -16.35038 -15.97639 -15.82176 -15.57597 -15.42632 -15.09646 -14.67758 -14.44881 -14.25500 -14.03608 -13.89047 -13.45623 -13.07706 -13.01253 -12.88418 -12.79462 -12.71376 -12.62547 -12.31587 -12.17606 -11.85322 -11.79941 -11.59204 -11.51972 -11.40946 -11.28050 -10.79796 -10.65386 -9.83465 -9.62112 -8.90555 -8.61665 -7.83113 -5.22888 -0.55045 0.87071 1.20215 1.40725 1.46374 1.52981 1.79412 1.99333 2.07146 2.48282 2.85634 3.26823 3.33063 3.40488 3.56962 3.65959 3.78988 3.91778 4.03010 4.16799 4.24598 4.25969 4.43153 4.49647 4.50270 4.54003 4.57583 4.69822 4.73219 4.85191 4.94127 5.00032 5.12717 5.17640 5.29978 5.33616 5.41433 5.43229 5.45025 5.58057 5.65318 5.80758 5.94119 6.17966 6.29315 6.59314 6.65516 7.06389 7.26600 7.78706 8.41567 9.25124 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.015470 B = 0.003731 C = 0.003442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1809.562679 B = 7502.926792 C = 8133.541771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C -0.075 4.075 3 Si 0.983 3.017 4 H -0.272 1.272 5 H -0.302 1.302 6 H -0.269 1.269 7 C -0.243 4.243 8 H 0.093 0.907 9 N -0.623 5.623 10 C 0.136 3.864 11 C -0.097 4.097 12 H 0.118 0.882 13 C -0.105 4.105 14 C 0.090 3.910 15 N -0.601 5.601 16 C 0.560 3.440 17 O -0.588 6.588 18 C -0.165 4.165 19 C -0.017 4.017 20 C -0.187 4.187 21 C 0.014 3.986 22 C -0.248 4.248 23 C 0.137 3.863 24 N -0.423 5.423 25 H 0.459 0.541 26 N -0.359 5.359 27 C 0.109 3.891 28 C 0.118 3.882 29 H 0.063 0.937 30 C 0.197 3.803 31 H 0.241 0.759 32 H 0.048 0.952 33 H 0.035 0.965 34 H 0.094 0.906 35 H 0.121 0.879 36 H 0.104 0.896 37 H 0.072 0.928 38 H 0.141 0.859 39 H 0.165 0.835 40 H 0.178 0.822 41 H 0.257 0.743 42 H -0.003 1.003 43 H -0.002 1.002 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.389 -23.427 -15.863 28.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.605 5.605 2 C -0.267 4.267 3 Si 0.811 3.189 4 H -0.198 1.198 5 H -0.229 1.229 6 H -0.195 1.195 7 C -0.371 4.371 8 H 0.111 0.889 9 N -0.350 5.350 10 C 0.011 3.989 11 C -0.116 4.116 12 H 0.136 0.864 13 C -0.143 4.143 14 C -0.031 4.031 15 N -0.333 5.333 16 C 0.352 3.648 17 O -0.469 6.469 18 C -0.172 4.172 19 C -0.039 4.039 20 C -0.206 4.206 21 C -0.006 4.006 22 C -0.258 4.258 23 C -0.022 4.022 24 N -0.123 5.123 25 H 0.306 0.694 26 N -0.186 5.186 27 C -0.048 4.048 28 C 0.013 3.987 29 H 0.081 0.919 30 C 0.071 3.929 31 H 0.050 0.950 32 H 0.067 0.933 33 H 0.053 0.947 34 H 0.113 0.887 35 H 0.139 0.861 36 H 0.122 0.878 37 H 0.090 0.910 38 H 0.159 0.841 39 H 0.183 0.817 40 H 0.195 0.805 41 H 0.273 0.727 42 H 0.015 0.985 43 H 0.017 0.983 Dipole moment (debyes) X Y Z Total from point charges -5.584 -22.342 -14.585 27.260 hybrid contribution -0.301 1.844 0.190 1.878 sum -5.885 -20.499 -14.395 25.730 Atomic orbital electron populations 1.70337 1.06871 1.24999 1.58297 1.25841 0.96396 1.01767 1.02723 0.85085 0.76928 0.78277 0.78654 1.19767 1.22851 1.19474 1.19510 0.91212 0.83534 1.42885 0.88911 1.44537 1.01552 1.01872 1.86995 1.21602 0.95020 0.83712 0.98518 1.23163 0.91350 0.95611 1.01497 0.86415 1.22826 1.03667 0.95499 0.92328 1.22870 0.88765 0.92639 0.98842 1.48348 1.21804 1.46751 1.16429 1.18405 0.79903 0.81149 0.85357 1.90795 1.48423 1.35332 1.72377 1.19656 0.91056 1.10963 0.95529 1.21744 0.97500 0.90973 0.93643 1.20716 0.99233 1.04668 0.95973 1.20851 0.89155 0.92014 0.98578 1.20145 0.95439 1.13798 0.96404 1.23814 0.91425 0.94434 0.92532 1.46548 1.10891 1.42574 1.12286 0.69390 1.77713 0.98376 1.26791 1.15769 1.21794 0.91193 0.96945 0.94843 1.22205 0.97681 0.94877 0.83942 0.91851 1.20598 0.84418 0.90844 0.97037 0.94990 0.93335 0.94691 0.88744 0.86098 0.87779 0.91005 0.84133 0.81720 0.80484 0.72696 0.98499 0.98341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -65.43 10.24 21.65 0.22 -65.20 16 2 C -0.07 -4.65 5.48 84.86 0.47 -4.19 16 3 Si 0.98 49.22 29.55 68.60 2.03 51.25 16 4 H -0.27 -12.88 7.11 99.48 0.71 -12.17 16 5 H -0.30 -15.51 7.11 99.48 0.71 -14.81 16 6 H -0.27 -12.65 7.11 99.48 0.71 -11.95 16 7 C -0.24 -14.43 10.25 84.03 0.86 -13.56 16 8 H 0.09 5.08 7.83 -2.91 -0.02 5.06 16 9 N -0.62 -34.41 3.38 -699.21 -2.36 -36.77 16 10 C 0.14 5.44 6.45 86.69 0.56 6.00 16 11 C -0.10 -3.21 4.35 -8.92 -0.04 -3.25 16 12 H 0.12 3.46 8.14 -2.39 -0.02 3.44 16 13 C -0.11 -2.36 6.35 31.95 0.20 -2.15 16 14 C 0.09 2.46 4.65 86.84 0.40 2.87 16 15 N -0.60 -24.46 2.99 -791.23 -2.37 -26.82 16 16 C 0.56 26.21 7.17 86.59 0.62 26.83 16 17 O -0.59 -34.63 16.62 -4.17 -0.07 -34.70 16 18 C -0.17 -6.08 5.69 -18.65 -0.11 -6.19 16 19 C -0.02 -0.44 7.87 22.52 0.18 -0.26 16 20 C -0.19 -3.22 9.83 21.87 0.21 -3.00 16 21 C 0.01 0.20 10.02 22.35 0.22 0.42 16 22 C -0.25 -5.16 6.34 -20.24 -0.13 -5.29 16 23 C 0.14 1.68 12.08 84.42 1.02 2.70 16 24 N -0.42 -8.14 7.18 -56.29 -0.40 -8.55 16 25 H 0.46 5.03 8.96 -213.40 -1.91 3.12 16 26 N -0.36 -12.76 12.67 -45.22 -0.57 -13.33 16 27 C 0.11 3.74 7.34 43.75 0.32 4.06 16 28 C 0.12 5.27 3.57 45.72 0.16 5.43 16 29 H 0.06 2.94 8.14 -2.39 -0.02 2.92 16 30 C 0.20 11.53 4.88 86.34 0.42 11.95 16 31 H 0.24 16.26 8.31 -92.71 -0.77 15.49 16 32 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 33 H 0.04 1.31 6.52 -2.39 -0.02 1.30 16 34 H 0.09 1.78 8.14 -2.38 -0.02 1.76 16 35 H 0.12 1.91 8.08 -2.39 -0.02 1.89 16 36 H 0.10 2.26 6.54 -2.38 -0.02 2.24 16 37 H 0.07 1.97 6.33 -2.39 -0.02 1.96 16 38 H 0.14 3.47 5.40 -2.91 -0.02 3.45 16 39 H 0.17 1.58 8.06 -2.91 -0.02 1.56 16 40 H 0.18 0.72 8.06 -2.91 -0.02 0.70 16 41 H 0.26 -0.54 8.06 -2.92 -0.02 -0.57 16 42 H 0.00 -0.21 7.33 -2.39 -0.02 -0.23 16 43 H 0.00 -0.11 6.54 -2.39 -0.02 -0.13 16 Total: -1.00 -105.92 344.84 1.01 -104.91 By element: Atomic # 1 Polarization: 7.67 SS G_CDS: -0.85 Total: 6.82 kcal Atomic # 6 Polarization: 17.00 SS G_CDS: 5.38 Total: 22.38 kcal Atomic # 7 Polarization: -145.19 SS G_CDS: -5.48 Total: -150.67 kcal Atomic # 8 Polarization: -34.63 SS G_CDS: -0.07 Total: -34.70 kcal Atomic # 14 Polarization: 49.22 SS G_CDS: 2.03 Total: 51.25 kcal Total: -105.92 1.01 -104.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076116461.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 186.981 kcal (2) G-P(sol) polarization free energy of solvation -105.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -104.914 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds