Wall clock time and date at job start Tue Mar 31 2020 15:09:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86804 * 119.99772 * 2 1 4 4 H 1.48502 * 109.47067 * 275.00166 * 3 2 1 5 5 H 1.48500 * 109.47010 * 35.00278 * 3 2 1 6 6 H 1.48497 * 109.46923 * 154.99904 * 3 2 1 7 7 C 1.38810 * 120.00153 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99906 * 174.88359 * 7 2 1 9 9 N 1.36934 * 119.99900 * 354.87817 * 7 2 1 10 10 C 1.46707 * 125.31844 * 185.00313 * 9 7 2 11 11 C 1.54051 * 106.82754 * 161.84110 * 10 9 7 12 12 H 1.08997 * 113.43235 * 262.66762 * 11 10 9 13 13 C 1.55123 * 108.25776 * 135.80350 * 11 10 9 14 14 C 1.54854 * 101.77900 * 286.09305 * 13 11 10 15 15 N 1.47405 * 104.81142 * 322.81295 * 14 13 11 16 16 C 1.34779 * 125.59353 * 204.60716 * 15 14 13 17 17 O 1.21589 * 119.99793 * 184.09373 * 16 15 14 18 18 C 1.47525 * 119.99409 * 4.09595 * 16 15 14 19 19 C 1.39437 * 120.25157 * 324.17985 * 18 16 15 20 20 C 1.38282 * 120.28017 * 180.02562 * 19 18 16 21 21 C 1.37883 * 120.73114 * 0.23538 * 20 19 18 22 22 C 1.39683 * 120.10092 * 359.48642 * 21 20 19 23 23 N 1.35859 * 133.50680 * 180.18785 * 22 21 20 24 24 C 1.30091 * 109.53232 * 180.30756 * 23 22 21 25 25 N 1.36126 * 110.05116 * 0.02562 * 24 23 22 26 26 H 0.96996 * 126.30884 * 180.02562 * 25 24 23 27 27 C 1.37513 * 107.37961 * 359.97438 * 25 24 23 28 28 C 1.46738 * 108.81869 * 24.87517 * 15 14 13 29 29 H 1.09002 * 111.32695 * 235.85970 * 28 15 14 30 30 C 1.46629 * 125.32367 * 5.02398 * 9 7 2 31 31 H 0.96994 * 120.00361 * 359.97438 * 1 2 3 32 32 H 1.08997 * 109.99327 * 42.50117 * 10 9 7 33 33 H 1.08998 * 109.99096 * 281.17932 * 10 9 7 34 34 H 1.08996 * 110.96433 * 167.97214 * 13 11 10 35 35 H 1.09004 * 110.99935 * 44.22856 * 13 11 10 36 36 H 1.09001 * 110.37057 * 203.98880 * 14 13 11 37 37 H 1.08996 * 110.37350 * 81.64447 * 14 13 11 38 38 H 1.07997 * 119.85623 * 359.97438 * 19 18 16 39 39 H 1.08001 * 119.63635 * 179.97438 * 20 19 18 40 40 H 1.07994 * 119.94859 * 179.74667 * 21 20 19 41 41 H 1.08005 * 124.97423 * 179.97438 * 24 23 22 42 42 H 1.09000 * 109.76233 * 300.90900 * 30 9 7 43 43 H 1.08997 * 109.75502 * 61.61285 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3919 2.1075 -1.3948 5 1 1.5044 2.6199 0.8031 6 1 3.5965 1.4121 0.5917 7 6 2.0103 -1.2021 -0.0005 8 1 3.0870 -1.2039 -0.0839 9 7 1.3297 -2.3857 0.1048 10 6 1.9470 -3.7116 0.2205 11 6 0.8643 -4.6613 0.7673 12 1 0.9249 -4.8131 1.8449 13 6 0.9195 -5.9809 -0.0463 14 6 0.2877 -5.5489 -1.3925 15 7 -0.7833 -4.6068 -1.0210 16 6 -1.8779 -4.3330 -1.7582 17 8 -2.6625 -3.4809 -1.3883 18 6 -2.1239 -5.0672 -3.0139 19 6 -1.0569 -5.4380 -3.8314 20 6 -1.2868 -6.1258 -5.0088 21 6 -2.5696 -6.4511 -5.3958 22 6 -3.6552 -6.0962 -4.5917 23 7 -4.9975 -6.2752 -4.7002 24 6 -5.5917 -5.7439 -3.6721 25 7 -4.6715 -5.1886 -2.8366 26 1 -4.8561 -4.7312 -2.0015 27 6 -3.4319 -5.3969 -3.3944 28 6 -0.4593 -4.0109 0.2803 29 1 -1.2644 -4.1655 0.9986 30 6 -0.1297 -2.5261 0.1191 31 1 -0.4850 0.8400 0.0004 32 1 2.7900 -3.6713 0.9103 33 1 2.2823 -4.0533 -0.7587 34 1 0.3246 -6.7590 0.4318 35 1 1.9490 -6.3105 -0.1866 36 1 -0.1297 -6.4126 -1.9102 37 1 1.0296 -5.0525 -2.0179 38 1 -0.0467 -5.1863 -3.5441 39 1 -0.4526 -6.4075 -5.6344 40 1 -2.7349 -6.9849 -6.3199 41 1 -6.6589 -5.7426 -3.5061 42 1 -0.5461 -1.9615 0.9534 43 1 -0.5446 -2.1571 -0.8189 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001076387460.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:09:45 Heat of formation + Delta-G solvation = 83.882560 kcal Electronic energy + Delta-G solvation = -28134.419402 eV Core-core repulsion = 24374.400760 eV Total energy + Delta-G solvation = -3760.018643 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.24216 -40.29125 -38.03254 -36.98930 -34.83410 -33.17925 -32.25106 -30.92671 -30.33307 -29.57813 -28.55970 -26.49096 -24.76083 -24.25110 -22.63100 -22.48115 -21.67161 -20.74799 -19.81701 -18.91393 -17.78691 -17.56865 -16.80442 -16.53968 -15.90815 -15.35072 -15.29577 -15.04121 -14.59054 -14.26011 -13.99741 -13.87179 -13.72820 -13.25054 -13.01601 -12.81567 -12.21908 -12.10234 -12.00510 -11.96971 -11.74169 -11.56097 -11.09088 -11.00296 -10.80642 -10.72918 -10.48556 -10.36072 -10.26187 -10.16668 -9.89816 -9.72271 -9.48870 -8.56865 -8.54839 -8.32027 -8.17354 -6.81037 -5.68318 -3.03955 0.59857 1.39667 2.49820 2.88851 3.15156 3.24075 3.40813 3.45605 3.48361 3.79520 4.11154 4.44060 4.50041 4.69303 4.71571 4.87648 5.01741 5.09440 5.15934 5.21651 5.30495 5.45309 5.48253 5.56833 5.61779 5.69982 5.71657 5.83623 5.87089 5.98593 6.15222 6.16624 6.26986 6.31078 6.33018 6.44696 6.52096 6.61098 6.67456 6.83165 7.22811 7.56243 7.63413 7.69634 7.85224 7.91319 8.29240 8.44650 9.23446 9.84813 10.48180 11.41669 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.015828 B = 0.003754 C = 0.003467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1768.642650 B = 7456.811558 C = 8074.621806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.004 4.004 3 Si 0.909 3.091 4 H -0.290 1.290 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.235 4.235 8 H 0.078 0.922 9 N -0.602 5.602 10 C 0.142 3.858 11 C -0.110 4.110 12 H 0.099 0.901 13 C -0.125 4.125 14 C 0.095 3.905 15 N -0.593 5.593 16 C 0.569 3.431 17 O -0.534 6.534 18 C -0.113 4.113 19 C -0.070 4.070 20 C -0.135 4.135 21 C -0.045 4.045 22 C 0.035 3.965 23 N -0.497 5.497 24 C 0.260 3.740 25 N -0.589 5.589 26 H 0.432 0.568 27 C 0.095 3.905 28 C 0.116 3.884 29 H 0.077 0.923 30 C 0.175 3.825 31 H 0.253 0.747 32 H 0.035 0.965 33 H 0.018 0.982 34 H 0.071 0.929 35 H 0.084 0.916 36 H 0.077 0.923 37 H 0.075 0.925 38 H 0.142 0.858 39 H 0.136 0.864 40 H 0.132 0.868 41 H 0.218 0.782 42 H 0.056 0.944 43 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.814 -17.337 -5.252 18.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.201 4.201 3 Si 0.740 3.260 4 H -0.217 1.217 5 H -0.216 1.216 6 H -0.206 1.206 7 C -0.363 4.363 8 H 0.096 0.904 9 N -0.329 5.329 10 C 0.015 3.985 11 C -0.130 4.130 12 H 0.117 0.883 13 C -0.164 4.164 14 C -0.028 4.028 15 N -0.326 5.326 16 C 0.358 3.642 17 O -0.411 6.411 18 C -0.119 4.119 19 C -0.090 4.090 20 C -0.156 4.156 21 C -0.065 4.065 22 C -0.083 4.083 23 N -0.217 5.217 24 C -0.028 4.028 25 N -0.199 5.199 26 H 0.272 0.728 27 C -0.019 4.019 28 C 0.013 3.987 29 H 0.095 0.905 30 C 0.049 3.951 31 H 0.063 0.937 32 H 0.054 0.946 33 H 0.035 0.965 34 H 0.090 0.910 35 H 0.102 0.898 36 H 0.095 0.905 37 H 0.093 0.907 38 H 0.159 0.841 39 H 0.154 0.846 40 H 0.150 0.850 41 H 0.234 0.766 42 H 0.074 0.926 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -5.740 -17.059 -5.811 18.914 hybrid contribution 0.655 1.661 1.026 2.060 sum -5.085 -15.398 -4.785 16.907 Atomic orbital electron populations 1.69998 1.04835 1.25085 1.56164 1.24854 0.95653 0.97714 1.01923 0.86146 0.78657 0.83743 0.77480 1.21686 1.21635 1.20597 1.19000 0.90744 0.82388 1.44187 0.90427 1.44223 1.01396 1.00707 1.86578 1.21311 0.93960 0.86278 0.96909 1.23165 0.95731 0.94374 0.99751 0.88301 1.22783 1.01267 0.97255 0.95050 1.22594 0.89915 0.92440 0.97847 1.48280 1.20708 1.42656 1.20944 1.17759 0.80748 0.82553 0.83131 1.90809 1.46696 1.32317 1.71325 1.18868 0.90475 1.04831 0.97706 1.21462 0.98363 0.95461 0.93756 1.20844 0.96499 1.01040 0.97195 1.20405 0.89836 0.97957 0.98301 1.19022 0.91666 1.02913 0.94707 1.70501 1.04391 1.23810 1.22986 1.25408 0.96992 0.93857 0.86502 1.43205 1.05162 1.48334 1.23239 0.72788 1.18574 0.86173 1.01383 0.95724 1.22541 0.95960 0.97119 0.83113 0.90456 1.21148 0.84420 0.87309 1.02187 0.93675 0.94634 0.96470 0.91045 0.89766 0.90515 0.90741 0.84076 0.84620 0.85001 0.76606 0.92629 0.92955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.84 10.27 55.49 0.57 -27.27 16 2 C 0.00 -0.13 5.48 -17.43 -0.10 -0.22 16 3 Si 0.91 22.42 29.56 -169.99 -5.02 17.40 16 4 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 5 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 6 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.24 -6.58 10.24 -15.06 -0.15 -6.74 16 8 H 0.08 2.09 7.83 -52.49 -0.41 1.67 16 9 N -0.60 -15.32 3.38 -172.36 -0.58 -15.90 16 10 C 0.14 2.77 6.45 -3.38 -0.02 2.75 16 11 C -0.11 -1.76 4.35 -87.73 -0.38 -2.14 16 12 H 0.10 1.44 8.14 -51.93 -0.42 1.02 16 13 C -0.13 -1.49 6.35 -24.63 -0.16 -1.64 16 14 C 0.09 1.25 4.65 -2.57 -0.01 1.24 16 15 N -0.59 -10.27 2.99 -163.93 -0.49 -10.76 16 16 C 0.57 10.59 7.14 -12.47 -0.09 10.50 16 17 O -0.53 -11.78 16.02 5.29 0.08 -11.70 16 18 C -0.11 -1.75 5.52 -104.95 -0.58 -2.33 16 19 C -0.07 -0.90 7.89 -39.12 -0.31 -1.21 16 20 C -0.14 -1.44 9.99 -39.70 -0.40 -1.84 16 21 C -0.05 -0.53 10.09 -39.17 -0.40 -0.93 16 22 C 0.03 0.49 7.22 -84.71 -0.61 -0.12 16 23 N -0.50 -6.68 11.28 -12.04 -0.14 -6.81 16 24 C 0.26 2.74 12.97 -89.72 -1.16 1.58 16 25 N -0.59 -7.38 6.11 -11.56 -0.07 -7.46 16 26 H 0.43 5.05 8.48 -40.82 -0.35 4.71 16 27 C 0.09 1.41 6.88 -83.77 -0.58 0.84 16 28 C 0.12 2.22 3.57 -66.60 -0.24 1.99 16 29 H 0.08 1.46 8.14 -51.93 -0.42 1.03 16 30 C 0.17 4.39 4.89 -4.00 -0.02 4.37 16 31 H 0.25 7.53 8.31 -40.82 -0.34 7.19 16 32 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.02 0.33 6.52 -51.93 -0.34 -0.01 16 34 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 35 H 0.08 0.84 8.08 -51.93 -0.42 0.42 16 36 H 0.08 0.84 6.54 -51.93 -0.34 0.50 16 37 H 0.07 1.01 6.30 -51.93 -0.33 0.68 16 38 H 0.14 1.68 5.42 -52.49 -0.28 1.40 16 39 H 0.14 1.02 8.06 -52.49 -0.42 0.59 16 40 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 41 H 0.22 1.15 8.06 -52.48 -0.42 0.73 16 42 H 0.06 1.58 7.19 -51.93 -0.37 1.21 16 43 H 0.05 1.54 6.68 -51.93 -0.35 1.19 16 LS Contribution 342.71 15.07 5.16 5.16 Total: -1.00 -36.40 342.71 -10.97 -47.36 By element: Atomic # 1 Polarization: 9.17 SS G_CDS: -5.28 Total: 3.89 kcal Atomic # 6 Polarization: 11.28 SS G_CDS: -5.20 Total: 6.08 kcal Atomic # 7 Polarization: -67.49 SS G_CDS: -0.71 Total: -68.19 kcal Atomic # 8 Polarization: -11.78 SS G_CDS: 0.08 Total: -11.70 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.02 Total: 17.40 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -36.40 -10.97 -47.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076387460.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.245 kcal (2) G-P(sol) polarization free energy of solvation -36.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.363 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds