Wall clock time and date at job start Tue Mar 31 2020 15:09:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86804 * 119.99772 * 2 1 4 4 H 1.48502 * 109.47067 * 275.00166 * 3 2 1 5 5 H 1.48500 * 109.47010 * 35.00278 * 3 2 1 6 6 H 1.48497 * 109.46923 * 154.99904 * 3 2 1 7 7 C 1.38810 * 120.00153 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99906 * 174.88359 * 7 2 1 9 9 N 1.36934 * 119.99900 * 354.87817 * 7 2 1 10 10 C 1.46707 * 125.31844 * 185.00313 * 9 7 2 11 11 C 1.54051 * 106.82754 * 161.84110 * 10 9 7 12 12 H 1.08997 * 113.43235 * 262.66762 * 11 10 9 13 13 C 1.55123 * 108.25776 * 135.80350 * 11 10 9 14 14 C 1.54854 * 101.77900 * 286.09305 * 13 11 10 15 15 N 1.47405 * 104.81142 * 322.81295 * 14 13 11 16 16 C 1.34779 * 125.59353 * 204.60716 * 15 14 13 17 17 O 1.21589 * 119.99793 * 184.09373 * 16 15 14 18 18 C 1.47525 * 119.99409 * 4.09595 * 16 15 14 19 19 C 1.39437 * 120.25157 * 324.17985 * 18 16 15 20 20 C 1.38282 * 120.28017 * 180.02562 * 19 18 16 21 21 C 1.37883 * 120.73114 * 0.23538 * 20 19 18 22 22 C 1.39683 * 120.10092 * 359.48642 * 21 20 19 23 23 N 1.35859 * 133.50680 * 180.18785 * 22 21 20 24 24 C 1.30091 * 109.53232 * 180.30756 * 23 22 21 25 25 N 1.36126 * 110.05116 * 0.02562 * 24 23 22 26 26 H 0.96996 * 126.30884 * 180.02562 * 25 24 23 27 27 C 1.37513 * 107.37961 * 359.97438 * 25 24 23 28 28 C 1.46738 * 108.81869 * 24.87517 * 15 14 13 29 29 H 1.09002 * 111.32695 * 235.85970 * 28 15 14 30 30 C 1.46629 * 125.32367 * 5.02398 * 9 7 2 31 31 H 0.96994 * 120.00361 * 359.97438 * 1 2 3 32 32 H 1.08997 * 109.99327 * 42.50117 * 10 9 7 33 33 H 1.08998 * 109.99096 * 281.17932 * 10 9 7 34 34 H 1.08996 * 110.96433 * 167.97214 * 13 11 10 35 35 H 1.09004 * 110.99935 * 44.22856 * 13 11 10 36 36 H 1.09001 * 110.37057 * 203.98880 * 14 13 11 37 37 H 1.08996 * 110.37350 * 81.64447 * 14 13 11 38 38 H 1.07997 * 119.85623 * 359.97438 * 19 18 16 39 39 H 1.08001 * 119.63635 * 179.97438 * 20 19 18 40 40 H 1.07994 * 119.94859 * 179.74667 * 21 20 19 41 41 H 1.08005 * 124.97423 * 179.97438 * 24 23 22 42 42 H 1.09000 * 109.76233 * 300.90900 * 30 9 7 43 43 H 1.08997 * 109.75502 * 61.61285 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3919 2.1075 -1.3948 5 1 1.5044 2.6199 0.8031 6 1 3.5965 1.4121 0.5917 7 6 2.0103 -1.2021 -0.0005 8 1 3.0870 -1.2039 -0.0839 9 7 1.3297 -2.3857 0.1048 10 6 1.9470 -3.7116 0.2205 11 6 0.8643 -4.6613 0.7673 12 1 0.9249 -4.8131 1.8449 13 6 0.9195 -5.9809 -0.0463 14 6 0.2877 -5.5489 -1.3925 15 7 -0.7833 -4.6068 -1.0210 16 6 -1.8779 -4.3330 -1.7582 17 8 -2.6625 -3.4809 -1.3883 18 6 -2.1239 -5.0672 -3.0139 19 6 -1.0569 -5.4380 -3.8314 20 6 -1.2868 -6.1258 -5.0088 21 6 -2.5696 -6.4511 -5.3958 22 6 -3.6552 -6.0962 -4.5917 23 7 -4.9975 -6.2752 -4.7002 24 6 -5.5917 -5.7439 -3.6721 25 7 -4.6715 -5.1886 -2.8366 26 1 -4.8561 -4.7312 -2.0015 27 6 -3.4319 -5.3969 -3.3944 28 6 -0.4593 -4.0109 0.2803 29 1 -1.2644 -4.1655 0.9986 30 6 -0.1297 -2.5261 0.1191 31 1 -0.4850 0.8400 0.0004 32 1 2.7900 -3.6713 0.9103 33 1 2.2823 -4.0533 -0.7587 34 1 0.3246 -6.7590 0.4318 35 1 1.9490 -6.3105 -0.1866 36 1 -0.1297 -6.4126 -1.9102 37 1 1.0296 -5.0525 -2.0179 38 1 -0.0467 -5.1863 -3.5441 39 1 -0.4526 -6.4075 -5.6344 40 1 -2.7349 -6.9849 -6.3199 41 1 -6.6589 -5.7426 -3.5061 42 1 -0.5461 -1.9615 0.9534 43 1 -0.5446 -2.1571 -0.8189 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001076387460.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:09:44 Heat of formation + Delta-G solvation = 59.092301 kcal Electronic energy + Delta-G solvation = -28135.494389 eV Core-core repulsion = 24374.400760 eV Total energy + Delta-G solvation = -3761.093629 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.19679 -41.66963 -39.44245 -38.05558 -36.55670 -34.27314 -33.87330 -32.51603 -31.51820 -30.61846 -30.05130 -28.02984 -26.63813 -25.41122 -23.68554 -23.56042 -22.77079 -22.36524 -21.12395 -20.31591 -18.99274 -18.77893 -18.48198 -17.83459 -17.01827 -16.88555 -16.36786 -16.30633 -16.03664 -15.70257 -15.50350 -15.12046 -14.76784 -14.66412 -14.47547 -14.12350 -13.96274 -13.53288 -13.10693 -13.04647 -12.98726 -12.85893 -12.79534 -12.75423 -12.37813 -12.14292 -11.88019 -11.85423 -11.75971 -11.60040 -11.45348 -11.40503 -10.86767 -10.70903 -9.74393 -9.45947 -9.22263 -8.91080 -7.86580 -5.24419 -0.39434 0.43600 1.41282 1.43621 1.45265 1.53381 1.90312 1.98361 2.01648 2.46629 2.78723 3.22578 3.29976 3.35404 3.55240 3.62646 3.77678 3.89204 3.96103 4.00169 4.22116 4.26360 4.32915 4.40088 4.41810 4.51760 4.55623 4.69987 4.75416 4.82666 4.91845 4.95959 5.08965 5.16646 5.23504 5.26719 5.36390 5.39581 5.41125 5.45323 5.61243 5.75569 5.78622 6.17118 6.32354 6.51370 6.77367 7.03937 7.07713 7.77372 8.39243 9.22162 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.015828 B = 0.003754 C = 0.003467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1768.642650 B = 7456.811558 C = 8074.621806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C -0.070 4.070 3 Si 0.978 3.022 4 H -0.290 1.290 5 H -0.298 1.298 6 H -0.259 1.259 7 C -0.241 4.241 8 H 0.090 0.910 9 N -0.624 5.624 10 C 0.134 3.866 11 C -0.097 4.097 12 H 0.119 0.881 13 C -0.107 4.107 14 C 0.088 3.912 15 N -0.594 5.594 16 C 0.561 3.439 17 O -0.587 6.587 18 C -0.139 4.139 19 C -0.067 4.067 20 C -0.123 4.123 21 C -0.043 4.043 22 C 0.017 3.983 23 N -0.524 5.524 24 C 0.274 3.726 25 N -0.596 5.596 26 H 0.432 0.568 27 C 0.068 3.932 28 C 0.119 3.881 29 H 0.073 0.927 30 C 0.195 3.805 31 H 0.242 0.758 32 H 0.046 0.954 33 H 0.034 0.966 34 H 0.096 0.904 35 H 0.118 0.882 36 H 0.106 0.894 37 H 0.073 0.927 38 H 0.150 0.850 39 H 0.177 0.823 40 H 0.158 0.842 41 H 0.264 0.736 42 H 0.004 0.996 43 H -0.003 1.003 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.910 -20.515 -6.363 21.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.602 5.602 2 C -0.263 4.263 3 Si 0.806 3.194 4 H -0.217 1.217 5 H -0.224 1.224 6 H -0.183 1.183 7 C -0.370 4.370 8 H 0.108 0.892 9 N -0.350 5.350 10 C 0.010 3.990 11 C -0.117 4.117 12 H 0.137 0.863 13 C -0.144 4.144 14 C -0.033 4.033 15 N -0.325 5.325 16 C 0.351 3.649 17 O -0.469 6.469 18 C -0.145 4.145 19 C -0.087 4.087 20 C -0.143 4.143 21 C -0.063 4.063 22 C -0.101 4.101 23 N -0.244 5.244 24 C -0.013 4.013 25 N -0.206 5.206 26 H 0.272 0.728 27 C -0.046 4.046 28 C 0.014 3.986 29 H 0.092 0.908 30 C 0.069 3.931 31 H 0.051 0.949 32 H 0.064 0.936 33 H 0.052 0.948 34 H 0.115 0.885 35 H 0.136 0.864 36 H 0.124 0.876 37 H 0.091 0.909 38 H 0.167 0.833 39 H 0.194 0.806 40 H 0.175 0.825 41 H 0.280 0.720 42 H 0.022 0.978 43 H 0.015 0.985 Dipole moment (debyes) X Y Z Total from point charges -3.764 -20.312 -6.930 21.790 hybrid contribution 0.047 2.624 1.319 2.937 sum -3.717 -17.689 -5.612 18.926 Atomic orbital electron populations 1.70300 1.06698 1.24964 1.58254 1.25767 0.96397 1.01482 1.02657 0.85066 0.78065 0.79102 0.77160 1.21682 1.22439 1.18343 1.19502 0.91504 0.83651 1.42360 0.89217 1.44540 1.01716 1.02465 1.86300 1.21613 0.95139 0.84174 0.98097 1.23164 0.91461 0.95622 1.01409 0.86342 1.22830 1.03638 0.95151 0.92811 1.22915 0.88782 0.92420 0.99221 1.48347 1.21332 1.42815 1.20030 1.18418 0.80390 0.82032 0.84010 1.90762 1.48588 1.34661 1.72865 1.18770 0.91878 1.06716 0.97140 1.21668 0.97906 0.95021 0.94081 1.21230 0.97370 0.99329 0.96335 1.20846 0.89573 0.97154 0.98687 1.19470 0.92615 1.03168 0.94803 1.70523 1.04266 1.25334 1.24259 1.26379 0.98466 0.91482 0.84981 1.43364 1.05145 1.48545 1.23540 0.72833 1.18849 0.86642 1.02397 0.96689 1.22258 0.97895 0.93743 0.84680 0.90848 1.20647 0.84360 0.90871 0.97242 0.94874 0.93552 0.94829 0.88532 0.86409 0.87570 0.90940 0.83280 0.80595 0.82476 0.72009 0.97762 0.98505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.97 10.27 21.65 0.22 -61.75 16 2 C -0.07 -4.19 5.48 84.86 0.47 -3.73 16 3 Si 0.98 47.45 29.56 68.60 2.03 49.48 16 4 H -0.29 -13.92 7.11 99.48 0.71 -13.22 16 5 H -0.30 -14.66 7.11 99.48 0.71 -13.95 16 6 H -0.26 -11.54 7.11 99.48 0.71 -10.84 16 7 C -0.24 -13.77 10.24 84.03 0.86 -12.91 16 8 H 0.09 4.77 7.83 -2.91 -0.02 4.75 16 9 N -0.62 -32.47 3.38 -699.21 -2.36 -34.83 16 10 C 0.13 5.02 6.45 86.70 0.56 5.58 16 11 C -0.10 -2.88 4.35 -8.92 -0.04 -2.92 16 12 H 0.12 3.09 8.14 -2.39 -0.02 3.07 16 13 C -0.11 -2.05 6.35 31.95 0.20 -1.84 16 14 C 0.09 2.07 4.65 86.84 0.40 2.47 16 15 N -0.59 -20.72 2.99 -790.81 -2.37 -23.09 16 16 C 0.56 21.87 7.14 86.69 0.62 22.49 16 17 O -0.59 -28.20 16.02 -4.00 -0.06 -28.26 16 18 C -0.14 -4.36 5.52 -20.07 -0.11 -4.47 16 19 C -0.07 -1.61 7.89 22.57 0.18 -1.43 16 20 C -0.12 -2.22 9.99 22.20 0.22 -2.00 16 21 C -0.04 -0.90 10.09 22.53 0.23 -0.67 16 22 C 0.02 0.46 7.22 39.41 0.28 0.75 16 23 N -0.52 -13.47 11.28 -192.01 -2.17 -15.64 16 24 C 0.27 5.51 12.97 180.03 2.34 7.84 16 25 N -0.60 -15.27 6.11 -190.49 -1.16 -16.43 16 26 H 0.43 10.80 8.48 -92.71 -0.79 10.02 16 27 C 0.07 2.03 6.88 39.26 0.27 2.30 16 28 C 0.12 4.67 3.57 45.72 0.16 4.84 16 29 H 0.07 2.90 8.14 -2.39 -0.02 2.89 16 30 C 0.20 10.47 4.89 86.34 0.42 10.90 16 31 H 0.24 15.47 8.31 -92.71 -0.77 14.70 16 32 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 33 H 0.03 1.18 6.52 -2.39 -0.02 1.16 16 34 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.12 1.60 8.08 -2.38 -0.02 1.59 16 36 H 0.11 1.93 6.54 -2.39 -0.02 1.92 16 37 H 0.07 1.76 6.30 -2.39 -0.02 1.75 16 38 H 0.15 3.24 5.42 -2.91 -0.02 3.22 16 39 H 0.18 1.75 8.06 -2.91 -0.02 1.72 16 40 H 0.16 2.41 8.06 -2.91 -0.02 2.39 16 41 H 0.26 2.20 8.06 -2.91 -0.02 2.17 16 42 H 0.00 0.26 7.19 -2.39 -0.02 0.25 16 43 H 0.00 -0.21 6.68 -2.39 -0.02 -0.23 16 Total: -1.00 -88.33 342.71 1.47 -86.86 By element: Atomic # 1 Polarization: 16.18 SS G_CDS: 0.28 Total: 16.46 kcal Atomic # 6 Polarization: 20.14 SS G_CDS: 7.06 Total: 27.20 kcal Atomic # 7 Polarization: -143.91 SS G_CDS: -7.83 Total: -151.74 kcal Atomic # 8 Polarization: -28.20 SS G_CDS: -0.06 Total: -28.26 kcal Atomic # 14 Polarization: 47.45 SS G_CDS: 2.03 Total: 49.48 kcal Total: -88.33 1.47 -86.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076387460.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.952 kcal (2) G-P(sol) polarization free energy of solvation -88.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.860 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds