Wall clock time and date at job start Tue Mar 31 2020 15:06:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86802 * 119.99755 * 2 1 4 4 H 1.48505 * 109.47161 * 239.99898 * 3 2 1 5 5 H 1.48501 * 109.47042 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47296 * 119.99737 * 3 2 1 7 7 C 1.38809 * 120.00420 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99949 * 180.02562 * 7 2 1 9 9 N 1.36932 * 119.99912 * 0.02562 * 7 2 1 10 10 C 1.46654 * 125.29109 * 180.02562 * 9 7 2 11 11 C 1.53515 * 107.04931 * 197.35876 * 10 9 7 12 12 H 1.09006 * 112.80286 * 211.53517 * 11 10 9 13 13 C 1.54784 * 109.68354 * 84.08984 * 11 10 9 14 14 C 1.54860 * 101.41862 * 212.86984 * 13 11 10 15 15 N 1.47346 * 104.90363 * 37.27358 * 14 13 11 16 16 C 1.34779 * 125.51659 * 156.70641 * 15 14 13 17 17 O 1.21619 * 119.99868 * 180.02562 * 16 15 14 18 18 C 1.47384 * 120.00399 * 0.03005 * 16 15 14 19 19 N 1.31574 * 126.82687 * 0.02562 * 18 16 15 20 20 N 1.28381 * 111.97174 * 179.97438 * 19 18 16 21 21 H 0.96999 * 124.37247 * 179.97438 * 20 19 18 22 22 C 1.37052 * 111.25153 * 359.97438 * 20 19 18 23 23 C 1.39129 * 134.72022 * 179.97438 * 22 20 19 24 24 C 1.36684 * 119.77968 * 179.97438 * 23 22 20 25 25 C 1.38901 * 120.89673 * 359.97438 * 24 23 22 26 26 C 1.36721 * 120.52495 * 0.02562 * 25 24 23 27 27 C 1.39202 * 119.50718 * 359.74518 * 26 25 24 28 28 C 1.47250 * 108.95815 * 336.72944 * 15 14 13 29 29 H 1.08996 * 112.73273 * 236.15165 * 28 15 14 30 30 C 1.46495 * 125.28809 * 0.02562 * 9 7 2 31 31 H 0.96999 * 120.00413 * 0.02562 * 1 2 3 32 32 H 1.08997 * 109.91349 * 316.71276 * 10 9 7 33 33 H 1.09000 * 109.91749 * 78.00612 * 10 9 7 34 34 H 1.09000 * 111.03140 * 330.96181 * 13 11 10 35 35 H 1.08996 * 111.03373 * 94.87921 * 13 11 10 36 36 H 1.09000 * 110.36036 * 278.41068 * 14 13 11 37 37 H 1.09001 * 110.43344 * 156.17149 * 14 13 11 38 38 H 1.07998 * 120.10856 * 359.97438 * 23 22 20 39 39 H 1.08005 * 119.54913 * 179.97438 * 24 23 22 40 40 H 1.07998 * 119.73682 * 180.02562 * 25 24 23 41 41 H 1.07990 * 120.24409 * 180.02562 * 26 25 24 42 42 H 1.09002 * 109.71712 * 297.79105 * 30 9 7 43 43 H 1.09001 * 109.71175 * 58.38891 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2850 2.7465 -0.0006 6 1 3.1038 1.6966 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3257 -2.3880 0.0005 10 6 1.9388 -3.7202 0.0016 11 6 0.8547 -4.7149 -0.4367 12 1 0.9736 -5.6976 0.0199 13 6 0.7824 -4.7598 -1.9822 14 6 -0.7256 -5.0275 -2.2109 15 7 -1.4116 -4.2498 -1.1642 16 6 -2.6868 -3.8170 -1.2194 17 8 -3.1532 -3.1797 -0.2945 18 6 -3.5161 -4.1160 -2.4005 19 7 -3.1516 -4.7903 -3.4699 20 7 -4.1027 -4.8818 -4.3274 21 1 -4.0298 -5.3399 -5.1792 22 6 -5.2342 -4.2484 -3.8837 23 6 -6.5107 -4.0489 -4.3999 24 6 -7.4343 -3.3489 -3.6752 25 6 -7.1173 -2.8318 -2.4256 26 6 -5.8705 -3.0133 -1.8948 27 6 -4.9164 -3.7273 -2.6142 28 6 -0.4781 -4.0217 -0.0485 29 1 -0.8646 -4.3827 0.9046 30 6 -0.1330 -2.5231 -0.0005 31 1 -0.4851 0.8400 -0.0004 32 1 2.7722 -3.7459 -0.7004 33 1 2.2867 -3.9680 1.0044 34 1 1.0814 -3.8054 -2.4156 35 1 1.3883 -5.5744 -2.3787 36 1 -0.9435 -6.0896 -2.0984 37 1 -1.0278 -4.6819 -3.1995 38 1 -6.7708 -4.4457 -5.3701 39 1 -8.4239 -3.1959 -4.0797 40 1 -7.8617 -2.2820 -1.8689 41 1 -5.6291 -2.6096 -0.9227 42 1 -0.5440 -2.0802 0.9067 43 1 -0.5480 -2.0218 -0.8750 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001076523982.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:06:41 Heat of formation + Delta-G solvation = 101.606566 kcal Electronic energy + Delta-G solvation = -27868.443715 eV Core-core repulsion = 24109.193643 eV Total energy + Delta-G solvation = -3759.250072 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.49178 -39.86830 -37.81479 -37.60980 -34.82007 -32.66104 -32.06192 -30.59434 -30.27717 -29.94755 -28.49623 -26.75882 -24.59189 -24.02056 -23.23098 -22.39551 -21.99668 -20.36316 -19.46963 -18.71243 -18.02148 -17.50233 -16.80793 -16.29164 -15.85940 -15.38706 -15.29961 -15.08779 -14.43457 -14.16610 -13.99645 -13.79198 -13.50479 -13.35514 -12.67094 -12.60951 -12.28097 -12.15989 -12.06191 -11.66427 -11.48229 -11.26261 -11.08486 -10.95588 -10.88053 -10.70714 -10.35862 -10.20482 -10.09814 -9.95512 -9.79706 -9.65112 -9.59972 -8.86670 -8.50988 -8.23887 -8.03265 -6.73391 -5.59742 -2.96456 0.78565 1.28539 1.97200 2.60495 3.28762 3.45906 3.49616 3.50153 3.52131 3.83655 4.29815 4.42420 4.56808 4.65988 4.87895 4.94241 5.00012 5.13489 5.30461 5.34806 5.44726 5.55525 5.58082 5.65788 5.74545 5.87273 5.88890 5.99480 6.01807 6.13490 6.16610 6.26191 6.36136 6.44700 6.48610 6.66368 6.67951 6.68837 6.75323 6.91880 6.95901 7.64305 7.69120 7.76980 7.98241 8.01790 8.37963 8.59576 9.31241 9.92219 10.55401 11.49529 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.014582 B = 0.003788 C = 0.003279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1919.746956 B = 7390.009982 C = 8537.253852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.005 4.005 3 Si 0.910 3.090 4 H -0.286 1.286 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.235 4.235 8 H 0.078 0.922 9 N -0.602 5.602 10 C 0.145 3.855 11 C -0.111 4.111 12 H 0.088 0.912 13 C -0.122 4.122 14 C 0.105 3.895 15 N -0.592 5.592 16 C 0.612 3.388 17 O -0.518 6.518 18 C 0.025 3.975 19 N -0.209 5.209 20 N -0.422 5.422 21 H 0.444 0.556 22 C 0.064 3.936 23 C -0.125 4.125 24 C -0.084 4.084 25 C -0.146 4.146 26 C -0.036 4.036 27 C -0.110 4.110 28 C 0.115 3.885 29 H 0.083 0.917 30 C 0.179 3.821 31 H 0.253 0.747 32 H 0.038 0.962 33 H 0.017 0.983 34 H 0.085 0.915 35 H 0.075 0.925 36 H 0.062 0.938 37 H 0.085 0.915 38 H 0.126 0.874 39 H 0.129 0.871 40 H 0.129 0.871 41 H 0.141 0.859 42 H 0.046 0.954 43 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.594 -13.575 -10.215 20.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.202 4.202 3 Si 0.740 3.260 4 H -0.213 1.213 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.363 4.363 8 H 0.095 0.905 9 N -0.329 5.329 10 C 0.019 3.981 11 C -0.131 4.131 12 H 0.107 0.893 13 C -0.160 4.160 14 C -0.018 4.018 15 N -0.325 5.325 16 C 0.397 3.603 17 O -0.391 6.391 18 C -0.147 4.147 19 N -0.038 5.038 20 N -0.141 5.141 21 H 0.289 0.711 22 C -0.049 4.049 23 C -0.147 4.147 24 C -0.104 4.104 25 C -0.165 4.165 26 C -0.057 4.057 27 C -0.117 4.117 28 C 0.012 3.988 29 H 0.101 0.899 30 C 0.054 3.946 31 H 0.064 0.936 32 H 0.056 0.944 33 H 0.034 0.966 34 H 0.104 0.896 35 H 0.094 0.906 36 H 0.080 0.920 37 H 0.103 0.897 38 H 0.144 0.856 39 H 0.147 0.853 40 H 0.147 0.853 41 H 0.159 0.841 42 H 0.064 0.936 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -11.073 -13.517 -10.152 20.209 hybrid contribution -0.157 0.980 -0.349 1.052 sum -11.229 -12.537 -10.502 19.839 Atomic orbital electron populations 1.69992 1.04725 1.25155 1.56155 1.24837 0.95660 0.97647 1.02063 0.86239 0.78433 0.83469 0.77810 1.21259 1.21636 1.21157 1.18949 0.90310 0.82299 1.44741 0.90462 1.44126 1.01454 0.99960 1.87371 1.21070 0.93871 0.85741 0.97466 1.22962 0.95517 0.98793 0.95838 0.89346 1.22754 0.94567 1.02944 0.95698 1.22402 0.92240 0.94993 0.92176 1.48323 1.10405 1.53549 1.20231 1.16207 0.80025 0.79679 0.84365 1.90838 1.71804 1.39304 1.37170 1.22907 0.93311 1.03435 0.95056 1.73038 1.15159 1.15822 0.99780 1.43073 1.06585 1.45999 1.18399 0.71098 1.19207 0.90670 0.99571 0.95423 1.19727 0.90053 1.03864 1.01034 1.20726 0.98875 0.96345 0.94488 1.20845 0.96828 1.02404 0.96404 1.20500 0.91239 0.94112 0.99804 1.19440 0.93520 1.03712 0.95020 1.22885 0.87262 1.00110 0.88571 0.89904 1.21278 0.84114 0.87167 1.02064 0.93622 0.94369 0.96570 0.89613 0.90603 0.92014 0.89697 0.85627 0.85292 0.85273 0.84102 0.93604 0.92600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.24 10.23 55.49 0.57 -27.68 16 2 C -0.01 -0.15 5.48 -17.43 -0.10 -0.24 16 3 Si 0.91 22.72 29.55 -169.99 -5.02 17.70 16 4 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 5 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 6 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 7 C -0.23 -6.68 10.25 -15.06 -0.15 -6.84 16 8 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 9 N -0.60 -15.73 3.37 -172.28 -0.58 -16.31 16 10 C 0.15 2.98 6.50 -3.69 -0.02 2.96 16 11 C -0.11 -1.91 3.97 -88.26 -0.35 -2.26 16 12 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 13 C -0.12 -1.88 6.32 -24.81 -0.16 -2.03 16 14 C 0.11 1.60 6.11 -2.60 -0.02 1.59 16 15 N -0.59 -11.24 2.83 -163.19 -0.46 -11.70 16 16 C 0.61 12.39 7.56 -12.54 -0.09 12.30 16 17 O -0.52 -12.07 16.49 5.26 0.09 -11.99 16 18 C 0.02 0.43 7.15 -80.76 -0.58 -0.15 16 19 N -0.21 -2.98 9.25 34.46 0.32 -2.66 16 20 N -0.42 -4.67 6.85 32.34 0.22 -4.45 16 21 H 0.44 3.00 8.96 -190.49 -1.71 1.29 16 22 C 0.06 0.79 7.38 -84.21 -0.62 0.17 16 23 C -0.13 -1.19 10.03 -39.81 -0.40 -1.59 16 24 C -0.08 -0.76 9.96 -39.90 -0.40 -1.16 16 25 C -0.15 -1.58 9.98 -39.88 -0.40 -1.98 16 26 C -0.04 -0.52 9.87 -39.77 -0.39 -0.91 16 27 C -0.11 -1.70 6.34 -105.05 -0.67 -2.37 16 28 C 0.11 2.34 3.81 -65.93 -0.25 2.09 16 29 H 0.08 1.66 8.14 -51.93 -0.42 1.24 16 30 C 0.18 4.65 4.62 -3.60 -0.02 4.64 16 31 H 0.25 7.68 8.31 -40.82 -0.34 7.34 16 32 H 0.04 0.75 7.95 -51.93 -0.41 0.34 16 33 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 34 H 0.09 1.58 7.93 -51.93 -0.41 1.17 16 35 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 37 H 0.08 1.28 6.25 -51.93 -0.32 0.96 16 38 H 0.13 0.79 8.06 -52.49 -0.42 0.36 16 39 H 0.13 0.78 8.06 -52.48 -0.42 0.36 16 40 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 41 H 0.14 2.14 7.65 -52.49 -0.40 1.74 16 42 H 0.05 1.37 7.51 -51.93 -0.39 0.98 16 43 H 0.06 1.65 6.89 -51.93 -0.36 1.30 16 LS Contribution 349.39 15.07 5.27 5.27 Total: -1.00 -35.51 349.39 -11.15 -46.66 By element: Atomic # 1 Polarization: 7.88 SS G_CDS: -6.93 Total: 0.95 kcal Atomic # 6 Polarization: 8.82 SS G_CDS: -4.61 Total: 4.21 kcal Atomic # 7 Polarization: -62.86 SS G_CDS: 0.07 Total: -62.80 kcal Atomic # 8 Polarization: -12.07 SS G_CDS: 0.09 Total: -11.99 kcal Atomic # 14 Polarization: 22.72 SS G_CDS: -5.02 Total: 17.70 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -35.51 -11.15 -46.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076523982.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.270 kcal (2) G-P(sol) polarization free energy of solvation -35.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.664 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds