Wall clock time and date at job start Tue Mar 31 2020 15:06:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86802 * 119.99755 * 2 1 4 4 H 1.48505 * 109.47161 * 239.99898 * 3 2 1 5 5 H 1.48501 * 109.47042 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47296 * 119.99737 * 3 2 1 7 7 C 1.38809 * 120.00420 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99949 * 180.02562 * 7 2 1 9 9 N 1.36932 * 119.99912 * 0.02562 * 7 2 1 10 10 C 1.46654 * 125.29109 * 180.02562 * 9 7 2 11 11 C 1.53515 * 107.04931 * 197.35876 * 10 9 7 12 12 H 1.09006 * 112.80286 * 211.53517 * 11 10 9 13 13 C 1.54784 * 109.68354 * 84.08984 * 11 10 9 14 14 C 1.54860 * 101.41862 * 212.86984 * 13 11 10 15 15 N 1.47346 * 104.90363 * 37.27358 * 14 13 11 16 16 C 1.34779 * 125.51659 * 156.70641 * 15 14 13 17 17 O 1.21619 * 119.99868 * 180.02562 * 16 15 14 18 18 C 1.47384 * 120.00399 * 0.03005 * 16 15 14 19 19 N 1.31574 * 126.82687 * 0.02562 * 18 16 15 20 20 N 1.28381 * 111.97174 * 179.97438 * 19 18 16 21 21 H 0.96999 * 124.37247 * 179.97438 * 20 19 18 22 22 C 1.37052 * 111.25153 * 359.97438 * 20 19 18 23 23 C 1.39129 * 134.72022 * 179.97438 * 22 20 19 24 24 C 1.36684 * 119.77968 * 179.97438 * 23 22 20 25 25 C 1.38901 * 120.89673 * 359.97438 * 24 23 22 26 26 C 1.36721 * 120.52495 * 0.02562 * 25 24 23 27 27 C 1.39202 * 119.50718 * 359.74518 * 26 25 24 28 28 C 1.47250 * 108.95815 * 336.72944 * 15 14 13 29 29 H 1.08996 * 112.73273 * 236.15165 * 28 15 14 30 30 C 1.46495 * 125.28809 * 0.02562 * 9 7 2 31 31 H 0.96999 * 120.00413 * 0.02562 * 1 2 3 32 32 H 1.08997 * 109.91349 * 316.71276 * 10 9 7 33 33 H 1.09000 * 109.91749 * 78.00612 * 10 9 7 34 34 H 1.09000 * 111.03140 * 330.96181 * 13 11 10 35 35 H 1.08996 * 111.03373 * 94.87921 * 13 11 10 36 36 H 1.09000 * 110.36036 * 278.41068 * 14 13 11 37 37 H 1.09001 * 110.43344 * 156.17149 * 14 13 11 38 38 H 1.07998 * 120.10856 * 359.97438 * 23 22 20 39 39 H 1.08005 * 119.54913 * 179.97438 * 24 23 22 40 40 H 1.07998 * 119.73682 * 180.02562 * 25 24 23 41 41 H 1.07990 * 120.24409 * 180.02562 * 26 25 24 42 42 H 1.09002 * 109.71712 * 297.79105 * 30 9 7 43 43 H 1.09001 * 109.71175 * 58.38891 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2850 2.7465 -0.0006 6 1 3.1038 1.6966 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3257 -2.3880 0.0005 10 6 1.9388 -3.7202 0.0016 11 6 0.8547 -4.7149 -0.4367 12 1 0.9736 -5.6976 0.0199 13 6 0.7824 -4.7598 -1.9822 14 6 -0.7256 -5.0275 -2.2109 15 7 -1.4116 -4.2498 -1.1642 16 6 -2.6868 -3.8170 -1.2194 17 8 -3.1532 -3.1797 -0.2945 18 6 -3.5161 -4.1160 -2.4005 19 7 -3.1516 -4.7903 -3.4699 20 7 -4.1027 -4.8818 -4.3274 21 1 -4.0298 -5.3399 -5.1792 22 6 -5.2342 -4.2484 -3.8837 23 6 -6.5107 -4.0489 -4.3999 24 6 -7.4343 -3.3489 -3.6752 25 6 -7.1173 -2.8318 -2.4256 26 6 -5.8705 -3.0133 -1.8948 27 6 -4.9164 -3.7273 -2.6142 28 6 -0.4781 -4.0217 -0.0485 29 1 -0.8646 -4.3827 0.9046 30 6 -0.1330 -2.5231 -0.0005 31 1 -0.4851 0.8400 -0.0004 32 1 2.7722 -3.7459 -0.7004 33 1 2.2867 -3.9680 1.0044 34 1 1.0814 -3.8054 -2.4156 35 1 1.3883 -5.5744 -2.3787 36 1 -0.9435 -6.0896 -2.0984 37 1 -1.0278 -4.6819 -3.1995 38 1 -6.7708 -4.4457 -5.3701 39 1 -8.4239 -3.1959 -4.0797 40 1 -7.8617 -2.2820 -1.8689 41 1 -5.6291 -2.6096 -0.9227 42 1 -0.5440 -2.0802 0.9067 43 1 -0.5480 -2.0218 -0.8750 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001076523982.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:06:40 Heat of formation + Delta-G solvation = 76.885099 kcal Electronic energy + Delta-G solvation = -27869.515718 eV Core-core repulsion = 24109.193643 eV Total energy + Delta-G solvation = -3760.322075 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.52714 -41.41359 -39.23958 -38.71799 -36.61970 -34.22085 -33.47239 -32.25495 -31.23874 -31.06611 -30.19899 -28.42778 -26.55091 -25.41367 -24.24405 -23.35182 -23.29645 -22.22988 -20.92209 -20.12484 -19.07430 -18.95263 -18.56989 -17.58888 -17.04840 -16.92736 -16.64609 -16.28030 -16.15304 -15.58810 -15.25784 -15.14137 -14.99168 -14.71920 -14.36183 -14.17208 -13.73491 -13.36840 -13.24871 -13.18333 -12.95464 -12.90827 -12.67675 -12.63510 -12.29074 -12.18861 -12.04620 -11.85577 -11.71086 -11.49762 -11.43312 -11.20437 -11.18294 -10.71070 -9.80195 -9.69560 -9.09104 -8.90058 -7.83174 -5.22944 -0.24445 0.34968 0.84595 1.41508 1.46607 1.53138 1.61161 1.98375 2.21351 2.48474 2.79602 3.10099 3.32970 3.46075 3.47992 3.65926 3.71461 3.79500 4.01509 4.11428 4.19439 4.32913 4.37050 4.41950 4.46735 4.49745 4.61621 4.71559 4.75701 4.87564 4.96829 5.03606 5.10420 5.17473 5.19835 5.23641 5.44507 5.45484 5.50481 5.56276 5.59233 5.78955 5.83388 6.11199 6.18851 6.48956 6.70214 7.05653 7.11195 7.78611 8.40157 9.24713 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.014582 B = 0.003788 C = 0.003279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1919.746956 B = 7390.009982 C = 8537.253852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C -0.072 4.072 3 Si 0.981 3.019 4 H -0.272 1.272 5 H -0.300 1.300 6 H -0.272 1.272 7 C -0.243 4.243 8 H 0.091 0.909 9 N -0.623 5.623 10 C 0.137 3.863 11 C -0.091 4.091 12 H 0.138 0.862 13 C -0.113 4.113 14 C 0.106 3.894 15 N -0.596 5.596 16 C 0.601 3.399 17 O -0.572 6.572 18 C -0.024 4.024 19 N -0.192 5.192 20 N -0.392 5.392 21 H 0.466 0.534 22 C 0.059 3.941 23 C -0.107 4.107 24 C -0.081 4.081 25 C -0.130 4.130 26 C -0.082 4.082 27 C -0.141 4.141 28 C 0.116 3.884 29 H 0.080 0.920 30 C 0.203 3.797 31 H 0.242 0.758 32 H 0.055 0.945 33 H 0.026 0.974 34 H 0.048 0.952 35 H 0.126 0.874 36 H 0.097 0.903 37 H 0.086 0.914 38 H 0.172 0.828 39 H 0.174 0.826 40 H 0.151 0.849 41 H 0.108 0.892 42 H -0.014 1.014 43 H 0.007 0.993 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.748 -16.389 -13.492 24.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.602 5.602 2 C -0.264 4.264 3 Si 0.809 3.191 4 H -0.197 1.197 5 H -0.227 1.227 6 H -0.198 1.198 7 C -0.372 4.372 8 H 0.109 0.891 9 N -0.350 5.350 10 C 0.012 3.988 11 C -0.111 4.111 12 H 0.155 0.845 13 C -0.150 4.150 14 C -0.015 4.015 15 N -0.328 5.328 16 C 0.389 3.611 17 O -0.449 6.449 18 C -0.193 4.193 19 N -0.025 5.025 20 N -0.116 5.116 21 H 0.316 0.684 22 C -0.055 4.055 23 C -0.128 4.128 24 C -0.101 4.101 25 C -0.149 4.149 26 C -0.103 4.103 27 C -0.148 4.148 28 C 0.012 3.988 29 H 0.098 0.902 30 C 0.076 3.924 31 H 0.051 0.949 32 H 0.073 0.927 33 H 0.044 0.956 34 H 0.067 0.933 35 H 0.145 0.855 36 H 0.115 0.885 37 H 0.104 0.896 38 H 0.190 0.810 39 H 0.191 0.809 40 H 0.169 0.831 41 H 0.126 0.874 42 H 0.004 0.996 43 H 0.025 0.975 Dipole moment (debyes) X Y Z Total from point charges -11.172 -16.397 -13.465 23.979 hybrid contribution -0.196 1.830 0.593 1.934 sum -11.368 -14.567 -12.872 22.519 Atomic orbital electron populations 1.70317 1.06699 1.25033 1.58147 1.25799 0.96427 1.01594 1.02618 0.85111 0.76983 0.78440 0.78564 1.19725 1.22660 1.19816 1.19478 0.91173 0.83483 1.43077 0.89081 1.44437 1.01702 1.01774 1.87048 1.21360 0.95255 0.83775 0.98436 1.23041 0.91158 0.99478 0.97378 0.84453 1.22750 0.95227 1.02980 0.94076 1.22644 0.91667 0.96179 0.91053 1.48430 1.10021 1.53639 1.20706 1.16783 0.80571 0.78789 0.84927 1.90785 1.73083 1.41647 1.39403 1.22410 0.94280 1.07186 0.95402 1.72879 1.15806 1.14572 0.99194 1.43139 1.05639 1.44419 1.18367 0.68415 1.19450 0.91942 0.99789 0.94275 1.20313 0.88124 1.01966 1.02370 1.21244 1.00740 0.94925 0.93181 1.21202 0.95423 1.00993 0.97305 1.20453 0.93338 0.96883 0.99596 1.19706 0.93098 1.04940 0.97075 1.22667 0.89851 0.96470 0.89791 0.90184 1.20755 0.84114 0.90601 0.96885 0.94901 0.92723 0.95584 0.93269 0.85549 0.88541 0.89620 0.81041 0.80872 0.83142 0.87404 0.99615 0.97500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -63.66 10.23 21.65 0.22 -63.44 16 2 C -0.07 -4.38 5.48 84.86 0.47 -3.91 16 3 Si 0.98 48.51 29.55 68.60 2.03 50.54 16 4 H -0.27 -12.67 7.11 99.48 0.71 -11.97 16 5 H -0.30 -15.16 7.11 99.48 0.71 -14.45 16 6 H -0.27 -12.79 7.11 99.48 0.71 -12.09 16 7 C -0.24 -14.29 10.25 84.03 0.86 -13.43 16 8 H 0.09 4.96 7.83 -2.91 -0.02 4.94 16 9 N -0.62 -33.87 3.37 -698.96 -2.36 -36.23 16 10 C 0.14 5.49 6.50 86.52 0.56 6.05 16 11 C -0.09 -2.95 3.97 -9.27 -0.04 -2.99 16 12 H 0.14 3.23 8.14 -2.38 -0.02 3.21 16 13 C -0.11 -3.20 6.32 31.84 0.20 -3.00 16 14 C 0.11 3.08 6.11 86.85 0.53 3.61 16 15 N -0.60 -23.69 2.83 -788.47 -2.23 -25.92 16 16 C 0.60 26.62 7.56 86.65 0.65 27.28 16 17 O -0.57 -30.17 16.49 -4.09 -0.07 -30.24 16 18 C -0.02 -0.87 7.15 43.86 0.31 -0.55 16 19 N -0.19 -5.37 9.25 -44.89 -0.42 -5.78 16 20 N -0.39 -7.78 6.85 -51.60 -0.35 -8.14 16 21 H 0.47 4.55 8.96 -220.04 -1.97 2.58 16 22 C 0.06 1.33 7.38 39.18 0.29 1.62 16 23 C -0.11 -1.57 10.03 22.12 0.22 -1.34 16 24 C -0.08 -1.16 9.96 22.06 0.22 -0.94 16 25 C -0.13 -2.73 9.98 22.07 0.22 -2.51 16 26 C -0.08 -2.55 9.87 22.15 0.22 -2.33 16 27 C -0.14 -4.59 6.34 -20.14 -0.13 -4.71 16 28 C 0.12 4.96 3.81 45.88 0.17 5.14 16 29 H 0.08 3.41 8.14 -2.39 -0.02 3.39 16 30 C 0.20 11.44 4.62 86.67 0.40 11.84 16 31 H 0.24 15.92 8.31 -92.71 -0.77 15.15 16 32 H 0.05 2.04 7.95 -2.39 -0.02 2.02 16 33 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.05 1.78 7.93 -2.39 -0.02 1.76 16 35 H 0.13 2.38 8.14 -2.39 -0.02 2.36 16 36 H 0.10 2.20 8.14 -2.39 -0.02 2.18 16 37 H 0.09 2.50 6.25 -2.39 -0.01 2.48 16 38 H 0.17 0.99 8.06 -2.91 -0.02 0.97 16 39 H 0.17 1.04 8.06 -2.91 -0.02 1.02 16 40 H 0.15 2.37 8.06 -2.91 -0.02 2.34 16 41 H 0.11 3.90 7.65 -2.92 -0.02 3.88 16 42 H -0.01 -0.96 7.51 -2.39 -0.02 -0.98 16 43 H 0.01 0.44 6.89 -2.39 -0.02 0.43 16 Total: -1.00 -90.21 349.39 1.07 -89.14 By element: Atomic # 1 Polarization: 11.16 SS G_CDS: -0.92 Total: 10.24 kcal Atomic # 6 Polarization: 14.65 SS G_CDS: 5.17 Total: 19.82 kcal Atomic # 7 Polarization: -134.37 SS G_CDS: -5.13 Total: -139.50 kcal Atomic # 8 Polarization: -30.17 SS G_CDS: -0.07 Total: -30.24 kcal Atomic # 14 Polarization: 48.51 SS G_CDS: 2.03 Total: 50.54 kcal Total: -90.21 1.07 -89.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076523982.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.022 kcal (2) G-P(sol) polarization free energy of solvation -90.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.137 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds