Wall clock time and date at job start Tue Mar 31 2020 14:57:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31630 * 1 3 3 Si 1.86802 * 119.99748 * 2 1 4 4 H 1.48502 * 109.46796 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.46910 * 299.99371 * 3 2 1 6 6 H 1.48497 * 109.47210 * 59.99792 * 3 2 1 7 7 C 1.38809 * 119.99899 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99898 * 180.02562 * 7 2 1 9 9 N 1.36939 * 120.00231 * 0.02562 * 7 2 1 10 10 C 1.46583 * 125.30690 * 180.02562 * 9 7 2 11 11 C 1.53259 * 108.15682 * 177.88746 * 10 9 7 12 12 H 1.09001 * 112.58147 * 222.75895 * 11 10 9 13 13 C 1.54798 * 110.31429 * 95.99583 * 11 10 9 14 14 C 1.54935 * 101.49921 * 212.06907 * 13 11 10 15 15 N 1.47363 * 105.10195 * 36.73293 * 14 13 11 16 16 C 1.34778 * 125.53050 * 156.51216 * 15 14 13 17 17 O 1.21671 * 119.99501 * 179.48932 * 16 15 14 18 18 C 1.46924 * 120.00226 * 359.48391 * 16 15 14 19 19 C 1.36368 * 126.82531 * 8.17770 * 18 16 15 20 20 N 1.35575 * 109.74419 * 179.97438 * 19 18 16 21 21 H 0.97000 * 124.71390 * 180.02562 * 20 19 18 22 22 C 1.37694 * 110.56345 * 0.02562 * 20 19 18 23 23 N 1.32672 * 132.94257 * 180.02562 * 22 20 19 24 24 C 1.31596 * 121.69490 * 179.97438 * 23 22 20 25 25 C 1.38591 * 121.53496 * 359.97438 * 24 23 22 26 26 C 1.38334 * 119.33165 * 0.02562 * 25 24 23 27 27 C 1.39355 * 118.05048 * 359.69526 * 26 25 24 28 28 C 1.47215 * 108.93181 * 337.41186 * 15 14 13 29 29 H 1.08998 * 112.28524 * 235.35110 * 28 15 14 30 30 C 1.47291 * 125.40373 * 0.68701 * 9 7 2 31 31 H 0.97002 * 119.99718 * 0.02562 * 1 2 3 32 32 H 1.09002 * 109.73723 * 58.19302 * 10 9 7 33 33 H 1.09005 * 109.73375 * 297.56858 * 10 9 7 34 34 H 1.08992 * 111.02202 * 330.12460 * 13 11 10 35 35 H 1.09005 * 111.01646 * 93.98033 * 13 11 10 36 36 H 1.09002 * 110.35557 * 156.08692 * 14 13 11 37 37 H 1.09003 * 110.36096 * 278.27263 * 14 13 11 38 38 H 1.07997 * 125.12211 * 359.97438 * 19 18 16 39 39 H 1.07994 * 119.23651 * 180.02562 * 24 23 22 40 40 H 1.08002 * 120.33536 * 180.02562 * 25 24 23 41 41 H 1.08000 * 120.97167 * 180.02562 * 26 25 24 42 42 H 1.09003 * 110.83983 * 78.48241 * 30 9 7 43 43 H 1.09007 * 109.32831 * 316.99193 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7103 1.3464 -0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8914 2.3965 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3257 -2.3881 0.0005 10 6 1.9380 -3.7199 0.0016 11 6 0.8153 -4.7617 0.0549 12 1 1.0335 -5.5772 0.7444 13 6 0.4775 -5.2611 -1.3708 14 6 -1.0388 -5.5533 -1.2446 15 7 -1.5613 -4.4959 -0.3611 16 6 -2.8401 -4.0725 -0.3177 17 8 -3.1643 -3.1952 0.4605 18 6 -3.8426 -4.6704 -1.2099 19 6 -3.6741 -5.7560 -2.0178 20 7 -4.8235 -6.0090 -2.6908 21 1 -4.9446 -6.7333 -3.3245 22 6 -5.7950 -5.0948 -2.3495 23 7 -7.0552 -4.9304 -2.7304 24 6 -7.8014 -3.9586 -2.2503 25 6 -7.3076 -3.0570 -1.3208 26 6 -5.9998 -3.1793 -0.8866 27 6 -5.2317 -4.2200 -1.4052 28 6 -0.4553 -3.9621 0.4508 29 1 -0.6639 -4.0151 1.5193 30 6 -0.1406 -2.5269 -0.0144 31 1 -0.4850 0.8401 -0.0004 32 1 2.5825 -3.8280 0.8741 33 1 2.5239 -3.8563 -0.9074 34 1 0.6656 -4.4844 -2.1120 35 1 1.0326 -6.1685 -1.6090 36 1 -1.5165 -5.5079 -2.2233 37 1 -1.2001 -6.5306 -0.7897 38 1 -2.7624 -6.3279 -2.1078 39 1 -8.8227 -3.8619 -2.5878 40 1 -7.9373 -2.2669 -0.9392 41 1 -5.5880 -2.4917 -0.1627 42 1 -0.5351 -2.3671 -1.0179 43 1 -0.5782 -1.8077 0.6781 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001076584849.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:57:56 Heat of formation + Delta-G solvation = 93.165481 kcal Electronic energy + Delta-G solvation = -27776.449184 eV Core-core repulsion = 24016.833079 eV Total energy + Delta-G solvation = -3759.616105 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.78630 -39.92557 -38.03262 -37.46070 -34.94788 -32.95828 -32.29929 -30.68453 -30.35024 -29.77257 -28.26429 -26.76650 -24.63439 -23.90446 -23.55109 -22.63051 -21.62688 -20.44207 -19.46656 -18.89277 -18.12401 -17.01614 -16.81270 -16.17302 -16.05737 -15.55900 -15.14674 -15.06787 -14.60034 -14.45836 -14.01162 -13.63178 -13.47093 -13.19700 -13.02267 -12.75045 -12.50774 -12.41629 -12.13307 -12.07858 -11.83432 -11.52504 -11.21489 -11.03114 -10.78524 -10.43605 -10.38396 -10.13836 -10.00522 -9.75739 -9.71245 -9.67025 -9.31670 -8.64126 -8.57448 -8.27604 -8.08711 -6.79011 -5.59106 -3.01797 0.82937 1.24270 2.02591 2.52699 3.27017 3.43670 3.48226 3.51643 3.62409 3.93676 4.34310 4.46641 4.52400 4.56760 4.73571 4.86159 4.93116 5.03892 5.12098 5.18795 5.36885 5.39776 5.43612 5.52586 5.61939 5.63969 5.77702 5.80975 5.92144 6.01115 6.17524 6.24108 6.28111 6.31633 6.36416 6.53605 6.64711 6.70133 6.76522 6.89543 7.02360 7.58133 7.67952 7.85740 7.93245 8.02264 8.41609 8.67536 9.26717 9.88341 10.50588 11.45010 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.015005 B = 0.003685 C = 0.003112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1865.554209 B = 7597.288402 C = 8994.474886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C -0.007 4.007 3 Si 0.912 3.088 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.290 1.290 7 C -0.231 4.231 8 H 0.079 0.921 9 N -0.602 5.602 10 C 0.145 3.855 11 C -0.109 4.109 12 H 0.087 0.913 13 C -0.122 4.122 14 C 0.088 3.912 15 N -0.604 5.604 16 C 0.597 3.403 17 O -0.526 6.526 18 C -0.199 4.199 19 C 0.092 3.908 20 N -0.569 5.569 21 H 0.422 0.578 22 C 0.276 3.724 23 N -0.501 5.501 24 C 0.134 3.866 25 C -0.200 4.200 26 C -0.014 4.014 27 C -0.109 4.109 28 C 0.117 3.883 29 H 0.084 0.916 30 C 0.164 3.836 31 H 0.252 0.748 32 H 0.024 0.976 33 H 0.024 0.976 34 H 0.083 0.917 35 H 0.079 0.921 36 H 0.077 0.923 37 H 0.067 0.933 38 H 0.198 0.802 39 H 0.161 0.839 40 H 0.139 0.861 41 H 0.147 0.853 42 H 0.020 0.980 43 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.898 -16.054 -5.465 19.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.204 4.204 3 Si 0.742 3.258 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.217 1.217 7 C -0.359 4.359 8 H 0.097 0.903 9 N -0.329 5.329 10 C 0.019 3.981 11 C -0.129 4.129 12 H 0.105 0.895 13 C -0.160 4.160 14 C -0.035 4.035 15 N -0.338 5.338 16 C 0.387 3.613 17 O -0.402 6.402 18 C -0.210 4.210 19 C -0.038 4.038 20 N -0.174 5.174 21 H 0.260 0.740 22 C 0.044 3.956 23 N -0.214 5.214 24 C -0.031 4.031 25 C -0.221 4.221 26 C -0.040 4.040 27 C -0.116 4.116 28 C 0.014 3.986 29 H 0.102 0.898 30 C 0.038 3.962 31 H 0.063 0.937 32 H 0.042 0.958 33 H 0.042 0.958 34 H 0.102 0.898 35 H 0.097 0.903 36 H 0.095 0.905 37 H 0.085 0.915 38 H 0.215 0.785 39 H 0.178 0.822 40 H 0.157 0.843 41 H 0.165 0.835 42 H 0.038 0.962 43 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -10.505 -16.023 -5.715 19.994 hybrid contribution 0.761 1.005 0.082 1.263 sum -9.745 -15.018 -5.633 18.768 Atomic orbital electron populations 1.69933 1.04744 1.24819 1.56530 1.24846 0.95687 0.97736 1.02112 0.86049 0.78611 0.83857 0.77256 1.20531 1.21812 1.21686 1.19061 0.90417 0.82283 1.44186 0.90336 1.44347 1.01562 0.99866 1.87155 1.20963 0.93323 0.85634 0.98186 1.22863 0.95941 0.97919 0.96149 0.89487 1.22797 0.93577 1.01751 0.97902 1.22672 0.95520 0.91121 0.94181 1.48323 1.07438 1.37723 1.40352 1.16735 0.80063 0.81944 0.82587 1.90824 1.79322 1.30536 1.39521 1.20096 0.94341 1.00908 1.05669 1.23032 0.89762 0.97909 0.93119 1.41336 1.09076 1.27688 1.39308 0.74012 1.18364 0.89269 0.91867 0.96135 1.66464 1.03341 1.23361 1.28214 1.22426 0.98454 0.89108 0.93122 1.21967 0.96484 1.02374 1.01297 1.21239 0.92313 0.94435 0.96013 1.19437 0.93771 0.98200 1.00163 1.22927 0.83437 0.97520 0.94720 0.89842 1.21797 0.84125 0.90265 1.00002 0.93679 0.95788 0.95837 0.89839 0.90263 0.90518 0.91475 0.78541 0.82203 0.84288 0.83505 0.96190 0.88388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.91 10.16 55.49 0.56 -27.34 16 2 C -0.01 -0.21 5.49 -17.43 -0.10 -0.31 16 3 Si 0.91 22.53 29.55 -169.99 -5.02 17.50 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 6 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 7 C -0.23 -6.52 10.25 -15.06 -0.15 -6.67 16 8 H 0.08 2.12 7.83 -52.49 -0.41 1.71 16 9 N -0.60 -15.52 3.39 -171.68 -0.58 -16.10 16 10 C 0.15 2.91 6.68 -3.86 -0.03 2.88 16 11 C -0.11 -1.75 3.87 -88.34 -0.34 -2.09 16 12 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 13 C -0.12 -1.58 6.26 -24.76 -0.16 -1.73 16 14 C 0.09 1.03 5.22 -2.55 -0.01 1.02 16 15 N -0.60 -10.29 2.88 -163.11 -0.47 -10.76 16 16 C 0.60 11.28 7.65 -12.74 -0.10 11.19 16 17 O -0.53 -12.13 16.47 5.21 0.09 -12.05 16 18 C -0.20 -3.07 6.22 -103.36 -0.64 -3.71 16 19 C 0.09 0.99 10.20 -16.57 -0.17 0.82 16 20 N -0.57 -5.77 5.97 -11.97 -0.07 -5.84 16 21 H 0.42 2.77 8.96 -40.82 -0.37 2.40 16 22 C 0.28 3.74 8.41 -155.53 -1.31 2.43 16 23 N -0.50 -6.54 10.39 -12.29 -0.13 -6.67 16 24 C 0.13 1.48 11.15 -17.52 -0.20 1.28 16 25 C -0.20 -2.29 10.10 -39.42 -0.40 -2.69 16 26 C -0.01 -0.20 9.99 -39.13 -0.39 -0.59 16 27 C -0.11 -1.70 6.28 -104.93 -0.66 -2.35 16 28 C 0.12 2.30 3.83 -65.76 -0.25 2.05 16 29 H 0.08 1.70 8.14 -51.93 -0.42 1.28 16 30 C 0.16 4.15 4.93 -3.02 -0.01 4.14 16 31 H 0.25 7.53 8.31 -40.82 -0.34 7.20 16 32 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.02 0.46 7.77 -51.93 -0.40 0.06 16 34 H 0.08 1.29 7.92 -51.93 -0.41 0.87 16 35 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.08 0.75 5.42 -51.93 -0.28 0.47 16 37 H 0.07 0.59 7.98 -51.93 -0.41 0.18 16 38 H 0.20 1.39 4.63 -52.49 -0.24 1.15 16 39 H 0.16 1.17 8.06 -52.49 -0.42 0.74 16 40 H 0.14 1.18 8.06 -52.49 -0.42 0.76 16 41 H 0.15 2.31 7.59 -52.49 -0.40 1.91 16 42 H 0.02 0.56 7.96 -51.93 -0.41 0.15 16 43 H 0.10 2.94 6.18 -51.93 -0.32 2.62 16 LS Contribution 345.89 15.07 5.21 5.21 Total: -1.00 -37.01 345.89 -10.66 -47.67 By element: Atomic # 1 Polarization: 8.05 SS G_CDS: -5.33 Total: 2.71 kcal Atomic # 6 Polarization: 10.58 SS G_CDS: -4.91 Total: 5.66 kcal Atomic # 7 Polarization: -66.03 SS G_CDS: -0.69 Total: -66.72 kcal Atomic # 8 Polarization: -12.13 SS G_CDS: 0.09 Total: -12.05 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.02 Total: 17.50 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -37.01 -10.66 -47.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076584849.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.840 kcal (2) G-P(sol) polarization free energy of solvation -37.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.675 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds