Wall clock time and date at job start Tue Mar 31 2020 14:57:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31630 * 1 3 3 Si 1.86802 * 119.99748 * 2 1 4 4 H 1.48502 * 109.46796 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.46910 * 299.99371 * 3 2 1 6 6 H 1.48497 * 109.47210 * 59.99792 * 3 2 1 7 7 C 1.38809 * 119.99899 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99898 * 180.02562 * 7 2 1 9 9 N 1.36939 * 120.00231 * 0.02562 * 7 2 1 10 10 C 1.46583 * 125.30690 * 180.02562 * 9 7 2 11 11 C 1.53259 * 108.15682 * 177.88746 * 10 9 7 12 12 H 1.09001 * 112.58147 * 222.75895 * 11 10 9 13 13 C 1.54798 * 110.31429 * 95.99583 * 11 10 9 14 14 C 1.54935 * 101.49921 * 212.06907 * 13 11 10 15 15 N 1.47363 * 105.10195 * 36.73293 * 14 13 11 16 16 C 1.34778 * 125.53050 * 156.51216 * 15 14 13 17 17 O 1.21671 * 119.99501 * 179.48932 * 16 15 14 18 18 C 1.46924 * 120.00226 * 359.48391 * 16 15 14 19 19 C 1.36368 * 126.82531 * 8.17770 * 18 16 15 20 20 N 1.35575 * 109.74419 * 179.97438 * 19 18 16 21 21 H 0.97000 * 124.71390 * 180.02562 * 20 19 18 22 22 C 1.37694 * 110.56345 * 0.02562 * 20 19 18 23 23 N 1.32672 * 132.94257 * 180.02562 * 22 20 19 24 24 C 1.31596 * 121.69490 * 179.97438 * 23 22 20 25 25 C 1.38591 * 121.53496 * 359.97438 * 24 23 22 26 26 C 1.38334 * 119.33165 * 0.02562 * 25 24 23 27 27 C 1.39355 * 118.05048 * 359.69526 * 26 25 24 28 28 C 1.47215 * 108.93181 * 337.41186 * 15 14 13 29 29 H 1.08998 * 112.28524 * 235.35110 * 28 15 14 30 30 C 1.47291 * 125.40373 * 0.68701 * 9 7 2 31 31 H 0.97002 * 119.99718 * 0.02562 * 1 2 3 32 32 H 1.09002 * 109.73723 * 58.19302 * 10 9 7 33 33 H 1.09005 * 109.73375 * 297.56858 * 10 9 7 34 34 H 1.08992 * 111.02202 * 330.12460 * 13 11 10 35 35 H 1.09005 * 111.01646 * 93.98033 * 13 11 10 36 36 H 1.09002 * 110.35557 * 156.08692 * 14 13 11 37 37 H 1.09003 * 110.36096 * 278.27263 * 14 13 11 38 38 H 1.07997 * 125.12211 * 359.97438 * 19 18 16 39 39 H 1.07994 * 119.23651 * 180.02562 * 24 23 22 40 40 H 1.08002 * 120.33536 * 180.02562 * 25 24 23 41 41 H 1.08000 * 120.97167 * 180.02562 * 26 25 24 42 42 H 1.09003 * 110.83983 * 78.48241 * 30 9 7 43 43 H 1.09007 * 109.32831 * 316.99193 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7103 1.3464 -0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8914 2.3965 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3257 -2.3881 0.0005 10 6 1.9380 -3.7199 0.0016 11 6 0.8153 -4.7617 0.0549 12 1 1.0335 -5.5772 0.7444 13 6 0.4775 -5.2611 -1.3708 14 6 -1.0388 -5.5533 -1.2446 15 7 -1.5613 -4.4959 -0.3611 16 6 -2.8401 -4.0725 -0.3177 17 8 -3.1643 -3.1952 0.4605 18 6 -3.8426 -4.6704 -1.2099 19 6 -3.6741 -5.7560 -2.0178 20 7 -4.8235 -6.0090 -2.6908 21 1 -4.9446 -6.7333 -3.3245 22 6 -5.7950 -5.0948 -2.3495 23 7 -7.0552 -4.9304 -2.7304 24 6 -7.8014 -3.9586 -2.2503 25 6 -7.3076 -3.0570 -1.3208 26 6 -5.9998 -3.1793 -0.8866 27 6 -5.2317 -4.2200 -1.4052 28 6 -0.4553 -3.9621 0.4508 29 1 -0.6639 -4.0151 1.5193 30 6 -0.1406 -2.5269 -0.0144 31 1 -0.4850 0.8401 -0.0004 32 1 2.5825 -3.8280 0.8741 33 1 2.5239 -3.8563 -0.9074 34 1 0.6656 -4.4844 -2.1120 35 1 1.0326 -6.1685 -1.6090 36 1 -1.5165 -5.5079 -2.2233 37 1 -1.2001 -6.5306 -0.7897 38 1 -2.7624 -6.3279 -2.1078 39 1 -8.8227 -3.8619 -2.5878 40 1 -7.9373 -2.2669 -0.9392 41 1 -5.5880 -2.4917 -0.1627 42 1 -0.5351 -2.3671 -1.0179 43 1 -0.5782 -1.8077 0.6781 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001076584849.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:57:55 Heat of formation + Delta-G solvation = 66.474607 kcal Electronic energy + Delta-G solvation = -27777.606588 eV Core-core repulsion = 24016.833079 eV Total energy + Delta-G solvation = -3760.773508 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.77857 -41.29558 -39.20811 -38.76688 -36.63703 -34.21940 -33.87447 -32.24436 -31.45586 -30.94873 -29.75505 -28.34022 -26.51655 -25.00417 -24.77681 -23.62555 -22.70825 -22.24438 -20.82566 -20.18007 -19.22356 -18.88022 -17.98372 -17.51246 -17.11076 -16.83960 -16.52600 -16.32044 -16.11051 -15.60568 -15.53180 -14.97077 -14.96780 -14.51467 -14.26613 -14.11476 -13.93120 -13.70818 -13.37521 -13.34843 -13.20321 -13.02609 -12.85193 -12.81567 -12.56272 -12.11067 -11.86265 -11.64741 -11.49010 -11.39318 -11.37356 -11.07543 -10.76358 -10.45512 -9.67616 -9.54223 -9.17284 -8.91448 -7.79093 -5.24920 -0.17110 0.25977 0.93379 1.41884 1.44377 1.54955 1.64187 1.98925 2.40836 2.47852 2.88055 3.30986 3.37599 3.48085 3.60024 3.62318 3.72188 3.82627 3.99755 4.03272 4.13339 4.17040 4.34685 4.38114 4.45900 4.50861 4.53090 4.54280 4.70160 4.83421 4.88092 4.98043 5.14117 5.16965 5.21108 5.25584 5.29126 5.36148 5.47816 5.52191 5.63058 5.79579 5.82372 6.24886 6.25716 6.66619 6.92301 7.05941 7.30683 7.77956 8.39119 9.23069 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.015005 B = 0.003685 C = 0.003112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1865.554209 B = 7597.288402 C = 8994.474886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C -0.074 4.074 3 Si 0.981 3.019 4 H -0.257 1.257 5 H -0.294 1.294 6 H -0.294 1.294 7 C -0.239 4.239 8 H 0.090 0.910 9 N -0.626 5.626 10 C 0.136 3.864 11 C -0.092 4.092 12 H 0.131 0.869 13 C -0.114 4.114 14 C 0.080 3.920 15 N -0.606 5.606 16 C 0.588 3.412 17 O -0.594 6.594 18 C -0.255 4.255 19 C 0.147 3.853 20 N -0.547 5.547 21 H 0.444 0.556 22 C 0.263 3.737 23 N -0.504 5.504 24 C 0.135 3.865 25 C -0.186 4.186 26 C -0.053 4.053 27 C -0.140 4.140 28 C 0.121 3.879 29 H 0.066 0.934 30 C 0.183 3.817 31 H 0.241 0.759 32 H 0.031 0.969 33 H 0.037 0.963 34 H 0.051 0.949 35 H 0.134 0.866 36 H 0.101 0.899 37 H 0.119 0.881 38 H 0.245 0.755 39 H 0.204 0.796 40 H 0.167 0.833 41 H 0.116 0.884 42 H -0.023 1.023 43 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.281 -20.285 -7.626 23.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.266 4.266 3 Si 0.809 3.191 4 H -0.181 1.181 5 H -0.222 1.222 6 H -0.222 1.222 7 C -0.368 4.368 8 H 0.108 0.892 9 N -0.352 5.352 10 C 0.011 3.989 11 C -0.111 4.111 12 H 0.149 0.851 13 C -0.151 4.151 14 C -0.040 4.040 15 N -0.338 5.338 16 C 0.380 3.620 17 O -0.476 6.476 18 C -0.266 4.266 19 C 0.014 3.986 20 N -0.153 5.153 21 H 0.286 0.714 22 C 0.031 3.969 23 N -0.217 5.217 24 C -0.030 4.030 25 C -0.207 4.207 26 C -0.080 4.080 27 C -0.147 4.147 28 C 0.016 3.984 29 H 0.084 0.916 30 C 0.057 3.943 31 H 0.051 0.949 32 H 0.049 0.951 33 H 0.055 0.945 34 H 0.070 0.930 35 H 0.152 0.848 36 H 0.119 0.881 37 H 0.137 0.863 38 H 0.260 0.740 39 H 0.220 0.780 40 H 0.184 0.816 41 H 0.134 0.866 42 H -0.005 1.005 43 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -9.854 -20.352 -7.930 23.962 hybrid contribution 0.550 2.313 0.736 2.489 sum -9.305 -18.039 -7.194 21.535 Atomic orbital electron populations 1.70292 1.06643 1.24690 1.58475 1.25792 0.96449 1.01572 1.02769 0.84966 0.78445 0.79167 0.76518 1.18074 1.22174 1.22165 1.19554 0.91184 0.83575 1.42484 0.89187 1.44672 1.01978 1.01687 1.86908 1.21277 0.94912 0.83902 0.98832 1.22921 0.91434 0.97257 0.99478 0.85063 1.22830 0.94883 1.02926 0.94484 1.23165 0.94624 0.91376 0.94874 1.48378 1.06245 1.38513 1.40656 1.17386 0.81134 0.81199 0.82284 1.90775 1.80652 1.33687 1.42455 1.19842 0.93954 1.04181 1.08592 1.23533 0.90592 0.95155 0.89349 1.41346 1.07949 1.27226 1.38799 0.71354 1.18515 0.89914 0.92370 0.96101 1.66607 1.03047 1.23874 1.28215 1.23141 0.99884 0.87914 0.92096 1.22294 0.95138 1.02799 1.00433 1.21256 0.94324 0.95186 0.97235 1.19781 0.94490 0.99098 1.01286 1.22563 0.86668 0.94886 0.94291 0.91598 1.21272 0.83954 0.93081 0.95994 0.94921 0.95065 0.94468 0.93028 0.84829 0.88081 0.86323 0.73958 0.77959 0.81573 0.86630 1.00492 0.94476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -62.95 10.16 21.65 0.22 -62.73 16 2 C -0.07 -4.45 5.49 84.86 0.47 -3.99 16 3 Si 0.98 48.23 29.55 68.60 2.03 50.26 16 4 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 5 H -0.29 -14.51 7.11 99.48 0.71 -13.81 16 6 H -0.29 -14.56 7.11 99.48 0.71 -13.85 16 7 C -0.24 -13.92 10.25 84.03 0.86 -13.06 16 8 H 0.09 4.90 7.83 -2.91 -0.02 4.87 16 9 N -0.63 -33.47 3.39 -697.07 -2.36 -35.84 16 10 C 0.14 5.27 6.68 86.45 0.58 5.85 16 11 C -0.09 -2.69 3.87 -9.32 -0.04 -2.73 16 12 H 0.13 2.81 8.14 -2.39 -0.02 2.79 16 13 C -0.11 -2.43 6.26 31.87 0.20 -2.23 16 14 C 0.08 1.52 5.22 86.88 0.45 1.98 16 15 N -0.61 -20.67 2.88 -788.19 -2.27 -22.95 16 16 C 0.59 23.64 7.65 86.52 0.66 24.30 16 17 O -0.59 -30.81 16.47 -4.26 -0.07 -30.88 16 18 C -0.25 -7.94 6.22 -19.05 -0.12 -8.06 16 19 C 0.15 2.66 10.20 83.68 0.85 3.51 16 20 N -0.55 -9.23 5.97 -191.79 -1.15 -10.37 16 21 H 0.44 3.73 8.96 -92.71 -0.83 2.90 16 22 C 0.26 6.77 8.41 133.76 1.12 7.90 16 23 N -0.50 -12.18 10.39 -192.81 -2.00 -14.18 16 24 C 0.13 2.71 11.15 84.81 0.95 3.66 16 25 C -0.19 -4.30 10.10 22.38 0.23 -4.07 16 26 C -0.05 -1.72 9.99 22.56 0.23 -1.50 16 27 C -0.14 -4.53 6.28 -20.06 -0.13 -4.65 16 28 C 0.12 4.89 3.83 46.01 0.18 5.07 16 29 H 0.07 2.86 8.14 -2.39 -0.02 2.84 16 30 C 0.18 10.05 4.93 86.61 0.43 10.47 16 31 H 0.24 15.68 8.31 -92.71 -0.77 14.91 16 32 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.04 1.37 7.77 -2.38 -0.02 1.35 16 34 H 0.05 1.46 7.92 -2.39 -0.02 1.44 16 35 H 0.13 1.53 8.14 -2.38 -0.02 1.51 16 36 H 0.10 1.44 5.42 -2.39 -0.01 1.43 16 37 H 0.12 1.20 7.98 -2.39 -0.02 1.18 16 38 H 0.24 1.88 4.63 -2.91 -0.01 1.87 16 39 H 0.20 2.22 8.06 -2.91 -0.02 2.20 16 40 H 0.17 2.74 8.06 -2.91 -0.02 2.72 16 41 H 0.12 4.33 7.59 -2.91 -0.02 4.30 16 42 H -0.02 -1.41 7.96 -2.39 -0.02 -1.43 16 43 H 0.04 2.47 6.18 -2.38 -0.01 2.46 16 Total: -1.00 -95.77 345.89 1.54 -94.23 By element: Atomic # 1 Polarization: 9.78 SS G_CDS: 0.23 Total: 10.01 kcal Atomic # 6 Polarization: 15.53 SS G_CDS: 6.92 Total: 22.44 kcal Atomic # 7 Polarization: -138.51 SS G_CDS: -7.57 Total: -146.07 kcal Atomic # 8 Polarization: -30.81 SS G_CDS: -0.07 Total: -30.88 kcal Atomic # 14 Polarization: 48.23 SS G_CDS: 2.03 Total: 50.26 kcal Total: -95.77 1.54 -94.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076584849.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.708 kcal (2) G-P(sol) polarization free energy of solvation -95.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.233 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds