Wall clock time and date at job start Tue Mar 31 2020 15:09:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86797 * 119.99918 * 2 1 4 4 H 1.48499 * 109.47408 * 270.00011 * 3 2 1 5 5 H 1.48502 * 109.47170 * 30.00615 * 3 2 1 6 6 H 1.48508 * 109.47225 * 149.99757 * 3 2 1 7 7 C 1.38810 * 120.00072 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99935 * 176.17538 * 7 2 1 9 9 N 1.36943 * 119.99961 * 356.17571 * 7 2 1 10 10 C 1.46534 * 119.73708 * 214.20720 * 9 7 2 11 11 C 1.53147 * 108.25226 * 236.39741 * 10 9 7 12 12 C 1.53067 * 109.21060 * 301.58922 * 11 10 9 13 13 H 1.08989 * 113.84583 * 275.71405 * 12 11 10 14 14 C 1.54360 * 111.57068 * 142.37765 * 12 11 10 15 15 N 1.47295 * 87.50326 * 274.17089 * 14 12 11 16 16 C 1.34774 * 136.53918 * 151.48108 * 15 14 12 17 17 O 1.21594 * 119.99591 * 185.41141 * 16 15 14 18 18 C 1.47522 * 120.00608 * 5.40016 * 16 15 14 19 19 C 1.39442 * 120.24270 * 23.38453 * 18 16 15 20 20 C 1.38290 * 120.28016 * 179.97438 * 19 18 16 21 21 C 1.37878 * 120.72773 * 0.02562 * 20 19 18 22 22 C 1.39678 * 120.10324 * 0.03683 * 21 20 19 23 23 N 1.35862 * 133.50345 * 179.66609 * 22 21 20 24 24 C 1.30089 * 109.53084 * 179.88633 * 23 22 21 25 25 N 1.36114 * 110.05366 * 0.41366 * 24 23 22 26 26 H 0.97002 * 126.31299 * 179.72933 * 25 24 23 27 27 C 1.37514 * 107.38143 * 359.74620 * 25 24 23 28 28 C 1.46464 * 86.91232 * 331.21758 * 15 14 12 29 29 H 1.08992 * 111.44347 * 277.31709 * 28 15 14 30 30 C 1.45697 * 119.73888 * 34.18031 * 9 7 2 31 31 H 0.96998 * 119.99971 * 359.97438 * 1 2 3 32 32 H 1.09002 * 109.70719 * 356.08484 * 10 9 7 33 33 H 1.08997 * 109.71094 * 116.66166 * 10 9 7 34 34 H 1.08998 * 109.51420 * 61.50882 * 11 10 9 35 35 H 1.09004 * 109.51397 * 181.61997 * 11 10 9 36 36 H 1.08999 * 113.51533 * 159.54048 * 14 12 11 37 37 H 1.08991 * 113.62765 * 28.82073 * 14 12 11 38 38 H 1.08001 * 119.86094 * 359.97438 * 19 18 16 39 39 H 1.07997 * 119.63570 * 180.02562 * 20 19 18 40 40 H 1.07999 * 119.95135 * 180.02562 * 21 20 19 41 41 H 1.08003 * 124.97349 * 180.15927 * 24 23 22 42 42 H 1.09003 * 108.78907 * 19.13588 * 30 9 7 43 43 H 1.09003 * 108.78942 * 260.92402 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4477 2.6526 0.7002 6 1 3.5478 1.4402 0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 3.0884 -1.2031 -0.0629 9 7 1.3279 -2.3868 0.0780 10 6 1.9173 -3.5187 0.7981 11 6 1.9946 -4.7098 -0.1614 12 6 0.5889 -5.0388 -0.6702 13 1 0.0171 -5.6811 -0.0006 14 6 0.6073 -5.4625 -2.1544 15 7 0.5306 -4.0320 -2.4970 16 6 0.9296 -3.2479 -3.5180 17 8 0.7894 -2.0421 -3.4491 18 6 1.5366 -3.8525 -4.7190 19 6 1.2773 -5.1839 -5.0425 20 6 1.8455 -5.7512 -6.1684 21 6 2.6748 -5.0139 -6.9867 22 6 2.9512 -3.6787 -6.6839 23 7 3.7129 -2.7233 -7.2780 24 6 3.6370 -1.6192 -6.5942 25 7 2.8301 -1.7948 -5.5123 26 1 2.6130 -1.1269 -4.8431 27 6 2.3794 -3.0936 -5.5424 28 6 -0.1808 -3.8479 -1.2301 29 1 -1.2402 -4.0836 -1.3301 30 6 0.0213 -2.5116 -0.5545 31 1 -0.4850 0.8400 0.0004 32 1 2.9186 -3.2561 1.1394 33 1 1.2929 -3.7753 1.6540 34 1 2.6371 -4.4569 -1.0047 35 1 2.4043 -5.5735 0.3625 36 1 -0.2733 -6.0299 -2.4556 37 1 1.5403 -5.9343 -2.4624 38 1 0.6301 -5.7745 -4.4110 39 1 1.6373 -6.7832 -6.4093 40 1 3.1114 -5.4695 -7.8632 41 1 4.1438 -0.6992 -6.8458 42 1 -0.0852 -1.7223 -1.2988 43 1 -0.7501 -2.3816 0.2046 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001084735477.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:09:49 Heat of formation + Delta-G solvation = 113.368687 kcal Electronic energy + Delta-G solvation = -28582.894060 eV Core-core repulsion = 24824.154032 eV Total energy + Delta-G solvation = -3758.740028 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.11427 -40.55315 -37.92525 -36.83313 -35.21569 -32.99912 -32.19237 -30.58883 -30.12124 -29.48125 -28.45665 -26.97367 -24.16198 -23.78534 -22.95581 -22.16557 -21.77673 -21.00158 -19.94177 -18.13373 -17.66338 -17.40746 -16.60882 -15.91198 -15.79571 -15.47898 -15.18311 -15.14232 -14.32612 -14.15788 -13.77705 -13.70128 -13.43285 -13.30051 -13.21576 -12.65531 -12.51127 -12.04000 -11.96242 -11.88835 -11.75531 -11.43111 -11.06098 -10.83462 -10.66805 -10.64720 -10.48775 -10.25535 -10.23081 -9.95411 -9.81922 -9.56146 -9.00102 -8.45390 -8.33406 -8.24738 -8.07995 -6.49261 -5.70835 -3.21375 0.65601 1.48751 2.61987 3.05831 3.23196 3.36561 3.39141 3.45046 3.46609 3.95791 4.21432 4.52233 4.54810 4.62357 4.86338 4.90277 5.16904 5.20540 5.31232 5.35121 5.41839 5.48835 5.50203 5.56572 5.66495 5.70618 5.87945 5.92633 6.04413 6.13310 6.27603 6.32409 6.35730 6.39652 6.43220 6.52667 6.59891 6.74644 6.79189 7.00299 7.40304 7.50699 7.81105 7.81535 7.92614 8.27451 8.60329 8.66986 9.34695 9.94999 10.47257 11.36306 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.011901 B = 0.005336 C = 0.004040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2352.168629 B = 5246.434901 C = 6928.760650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.017 3.983 3 Si 0.900 3.100 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.252 4.252 8 H 0.057 0.943 9 N -0.585 5.585 10 C 0.148 3.852 11 C -0.116 4.116 12 C -0.114 4.114 13 H 0.092 0.908 14 C 0.091 3.909 15 N -0.623 5.623 16 C 0.582 3.418 17 O -0.518 6.518 18 C -0.110 4.110 19 C -0.073 4.073 20 C -0.139 4.139 21 C -0.046 4.046 22 C 0.034 3.966 23 N -0.501 5.501 24 C 0.262 3.738 25 N -0.583 5.583 26 H 0.438 0.562 27 C 0.098 3.902 28 C 0.117 3.883 29 H 0.073 0.927 30 C 0.167 3.833 31 H 0.252 0.748 32 H 0.055 0.945 33 H 0.020 0.980 34 H 0.058 0.942 35 H 0.054 0.946 36 H 0.079 0.921 37 H 0.075 0.925 38 H 0.134 0.866 39 H 0.133 0.867 40 H 0.131 0.869 41 H 0.217 0.783 42 H 0.107 0.893 43 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.240 -13.203 -9.185 16.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.182 4.182 3 Si 0.730 3.270 4 H -0.216 1.216 5 H -0.216 1.216 6 H -0.206 1.206 7 C -0.382 4.382 8 H 0.075 0.925 9 N -0.307 5.307 10 C 0.022 3.978 11 C -0.155 4.155 12 C -0.133 4.133 13 H 0.111 0.889 14 C -0.032 4.032 15 N -0.358 5.358 16 C 0.371 3.629 17 O -0.395 6.395 18 C -0.116 4.116 19 C -0.093 4.093 20 C -0.160 4.160 21 C -0.066 4.066 22 C -0.084 4.084 23 N -0.221 5.221 24 C -0.026 4.026 25 N -0.193 5.193 26 H 0.279 0.721 27 C -0.017 4.017 28 C 0.013 3.987 29 H 0.091 0.909 30 C 0.041 3.959 31 H 0.063 0.937 32 H 0.073 0.927 33 H 0.038 0.962 34 H 0.077 0.923 35 H 0.073 0.927 36 H 0.097 0.903 37 H 0.093 0.907 38 H 0.152 0.848 39 H 0.151 0.849 40 H 0.149 0.851 41 H 0.234 0.766 42 H 0.125 0.875 43 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 2.585 -12.374 -10.088 16.173 hybrid contribution -0.210 1.326 0.887 1.609 sum 2.375 -11.048 -9.201 14.573 Atomic orbital electron populations 1.69954 1.05246 1.25201 1.54127 1.25221 0.95426 0.98002 0.99597 0.86347 0.79121 0.84058 0.77510 1.21626 1.21582 1.20562 1.19000 0.90275 0.83221 1.45700 0.92486 1.43399 1.19134 1.09416 1.58758 1.20747 0.97248 0.87683 0.92170 1.21835 0.93886 0.99217 1.00562 1.22812 0.98597 0.97525 0.94347 0.88939 1.23474 1.01255 0.83898 0.94593 1.49283 1.57376 1.09062 1.20115 1.17508 0.78756 0.85833 0.80778 1.90842 1.55765 1.13279 1.79594 1.19047 1.01631 0.94245 0.96694 1.21264 0.98570 0.92465 0.96998 1.20790 0.99417 1.00234 0.95523 1.20368 0.96714 0.90268 0.99238 1.19057 1.00057 0.95303 0.94016 1.70507 1.22729 0.99286 1.29549 1.25430 0.93403 0.99198 0.84570 1.43343 1.39780 1.11289 1.24911 0.72070 1.18627 0.99308 0.85793 0.97928 1.22763 0.94711 0.99871 0.81352 0.90947 1.20287 0.87216 0.91816 0.96536 0.93739 0.92672 0.96238 0.92278 0.92689 0.90285 0.90683 0.84784 0.84899 0.85124 0.76621 0.87521 0.95399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.74 10.64 55.49 0.59 -26.14 16 2 C 0.02 0.47 5.28 -17.43 -0.09 0.38 16 3 Si 0.90 22.39 29.55 -169.99 -5.02 17.37 16 4 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 5 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 6 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 7 C -0.25 -7.08 9.43 -15.06 -0.14 -7.22 16 8 H 0.06 1.60 7.83 -52.49 -0.41 1.19 16 9 N -0.58 -14.69 3.02 -174.90 -0.53 -15.22 16 10 C 0.15 3.04 6.46 -3.95 -0.03 3.01 16 11 C -0.12 -1.91 5.71 -26.62 -0.15 -2.06 16 12 C -0.11 -1.68 4.57 -90.16 -0.41 -2.09 16 13 H 0.09 1.14 8.14 -51.94 -0.42 0.71 16 14 C 0.09 1.16 5.46 -11.38 -0.06 1.10 16 15 N -0.62 -11.06 3.28 -188.74 -0.62 -11.67 16 16 C 0.58 11.55 7.81 -12.48 -0.10 11.45 16 17 O -0.52 -12.49 14.91 5.28 0.08 -12.41 16 18 C -0.11 -1.83 5.85 -104.95 -0.61 -2.44 16 19 C -0.07 -0.93 8.86 -39.11 -0.35 -1.28 16 20 C -0.14 -1.52 9.99 -39.69 -0.40 -1.91 16 21 C -0.05 -0.57 10.09 -39.18 -0.40 -0.97 16 22 C 0.03 0.52 7.22 -84.71 -0.61 -0.09 16 23 N -0.50 -7.54 11.28 -12.05 -0.14 -7.67 16 24 C 0.26 3.38 12.97 -89.73 -1.16 2.21 16 25 N -0.58 -9.03 6.04 -11.57 -0.07 -9.10 16 26 H 0.44 7.05 8.06 -40.82 -0.33 6.73 16 27 C 0.10 1.63 6.87 -83.77 -0.58 1.06 16 28 C 0.12 2.17 4.03 -77.68 -0.31 1.86 16 29 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 30 C 0.17 4.08 4.52 -5.43 -0.02 4.06 16 31 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 32 H 0.05 1.13 7.90 -51.93 -0.41 0.72 16 33 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.06 1.09 7.69 -51.93 -0.40 0.69 16 35 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.08 0.78 8.00 -51.93 -0.42 0.36 16 37 H 0.07 0.87 7.61 -51.93 -0.40 0.48 16 38 H 0.13 1.44 5.64 -52.49 -0.30 1.14 16 39 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 40 H 0.13 1.31 8.06 -52.49 -0.42 0.89 16 41 H 0.22 1.71 8.06 -52.48 -0.42 1.28 16 42 H 0.11 3.07 5.05 -51.93 -0.26 2.80 16 43 H 0.03 0.74 7.95 -51.93 -0.41 0.32 16 LS Contribution 345.95 15.07 5.21 5.21 Total: -1.00 -35.32 345.95 -11.34 -46.67 By element: Atomic # 1 Polarization: 11.33 SS G_CDS: -5.43 Total: 5.90 kcal Atomic # 6 Polarization: 12.50 SS G_CDS: -5.42 Total: 7.08 kcal Atomic # 7 Polarization: -69.05 SS G_CDS: -0.76 Total: -69.82 kcal Atomic # 8 Polarization: -12.49 SS G_CDS: 0.08 Total: -12.41 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.37 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -35.32 -11.34 -46.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084735477.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.035 kcal (2) G-P(sol) polarization free energy of solvation -35.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.666 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds