Wall clock time and date at job start Tue Mar 31 2020 15:09:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86797 * 119.99918 * 2 1 4 4 H 1.48499 * 109.47408 * 270.00011 * 3 2 1 5 5 H 1.48502 * 109.47170 * 30.00615 * 3 2 1 6 6 H 1.48508 * 109.47225 * 149.99757 * 3 2 1 7 7 C 1.38810 * 120.00072 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99935 * 176.17538 * 7 2 1 9 9 N 1.36943 * 119.99961 * 356.17571 * 7 2 1 10 10 C 1.46534 * 119.73708 * 214.20720 * 9 7 2 11 11 C 1.53147 * 108.25226 * 236.39741 * 10 9 7 12 12 C 1.53067 * 109.21060 * 301.58922 * 11 10 9 13 13 H 1.08989 * 113.84583 * 275.71405 * 12 11 10 14 14 C 1.54360 * 111.57068 * 142.37765 * 12 11 10 15 15 N 1.47295 * 87.50326 * 274.17089 * 14 12 11 16 16 C 1.34774 * 136.53918 * 151.48108 * 15 14 12 17 17 O 1.21594 * 119.99591 * 185.41141 * 16 15 14 18 18 C 1.47522 * 120.00608 * 5.40016 * 16 15 14 19 19 C 1.39442 * 120.24270 * 23.38453 * 18 16 15 20 20 C 1.38290 * 120.28016 * 179.97438 * 19 18 16 21 21 C 1.37878 * 120.72773 * 0.02562 * 20 19 18 22 22 C 1.39678 * 120.10324 * 0.03683 * 21 20 19 23 23 N 1.35862 * 133.50345 * 179.66609 * 22 21 20 24 24 C 1.30089 * 109.53084 * 179.88633 * 23 22 21 25 25 N 1.36114 * 110.05366 * 0.41366 * 24 23 22 26 26 H 0.97002 * 126.31299 * 179.72933 * 25 24 23 27 27 C 1.37514 * 107.38143 * 359.74620 * 25 24 23 28 28 C 1.46464 * 86.91232 * 331.21758 * 15 14 12 29 29 H 1.08992 * 111.44347 * 277.31709 * 28 15 14 30 30 C 1.45697 * 119.73888 * 34.18031 * 9 7 2 31 31 H 0.96998 * 119.99971 * 359.97438 * 1 2 3 32 32 H 1.09002 * 109.70719 * 356.08484 * 10 9 7 33 33 H 1.08997 * 109.71094 * 116.66166 * 10 9 7 34 34 H 1.08998 * 109.51420 * 61.50882 * 11 10 9 35 35 H 1.09004 * 109.51397 * 181.61997 * 11 10 9 36 36 H 1.08999 * 113.51533 * 159.54048 * 14 12 11 37 37 H 1.08991 * 113.62765 * 28.82073 * 14 12 11 38 38 H 1.08001 * 119.86094 * 359.97438 * 19 18 16 39 39 H 1.07997 * 119.63570 * 180.02562 * 20 19 18 40 40 H 1.07999 * 119.95135 * 180.02562 * 21 20 19 41 41 H 1.08003 * 124.97349 * 180.15927 * 24 23 22 42 42 H 1.09003 * 108.78907 * 19.13588 * 30 9 7 43 43 H 1.09003 * 108.78942 * 260.92402 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4477 2.6526 0.7002 6 1 3.5478 1.4402 0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 3.0884 -1.2031 -0.0629 9 7 1.3279 -2.3868 0.0780 10 6 1.9173 -3.5187 0.7981 11 6 1.9946 -4.7098 -0.1614 12 6 0.5889 -5.0388 -0.6702 13 1 0.0171 -5.6811 -0.0006 14 6 0.6073 -5.4625 -2.1544 15 7 0.5306 -4.0320 -2.4970 16 6 0.9296 -3.2479 -3.5180 17 8 0.7894 -2.0421 -3.4491 18 6 1.5366 -3.8525 -4.7190 19 6 1.2773 -5.1839 -5.0425 20 6 1.8455 -5.7512 -6.1684 21 6 2.6748 -5.0139 -6.9867 22 6 2.9512 -3.6787 -6.6839 23 7 3.7129 -2.7233 -7.2780 24 6 3.6370 -1.6192 -6.5942 25 7 2.8301 -1.7948 -5.5123 26 1 2.6130 -1.1269 -4.8431 27 6 2.3794 -3.0936 -5.5424 28 6 -0.1808 -3.8479 -1.2301 29 1 -1.2402 -4.0836 -1.3301 30 6 0.0213 -2.5116 -0.5545 31 1 -0.4850 0.8400 0.0004 32 1 2.9186 -3.2561 1.1394 33 1 1.2929 -3.7753 1.6540 34 1 2.6371 -4.4569 -1.0047 35 1 2.4043 -5.5735 0.3625 36 1 -0.2733 -6.0299 -2.4556 37 1 1.5403 -5.9343 -2.4624 38 1 0.6301 -5.7745 -4.4110 39 1 1.6373 -6.7832 -6.4093 40 1 3.1114 -5.4695 -7.8632 41 1 4.1438 -0.6992 -6.8458 42 1 -0.0852 -1.7223 -1.2988 43 1 -0.7501 -2.3816 0.2046 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001084735477.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:09:48 Heat of formation + Delta-G solvation = 89.402013 kcal Electronic energy + Delta-G solvation = -28583.933333 eV Core-core repulsion = 24824.154032 eV Total energy + Delta-G solvation = -3759.779301 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.17806 -41.89834 -39.29957 -37.96448 -37.02697 -34.13651 -33.97732 -32.01964 -31.68424 -30.52989 -29.82853 -28.60150 -25.77801 -25.18702 -24.27596 -23.28369 -22.93685 -22.48329 -21.26542 -19.63501 -18.98351 -18.65830 -18.00239 -17.35416 -17.23176 -16.89731 -16.43030 -16.19068 -16.08685 -15.58043 -15.23422 -15.05108 -14.89471 -14.61980 -14.55931 -14.22576 -14.02517 -13.54674 -13.09757 -13.03203 -12.92360 -12.79056 -12.73772 -12.71105 -12.37046 -12.25436 -11.97525 -11.78604 -11.78256 -11.48513 -11.39457 -11.00245 -10.67438 -10.36915 -9.60981 -9.44546 -9.19714 -8.54146 -7.86309 -5.39688 -0.38949 0.46967 1.35241 1.36390 1.45551 1.51809 1.90901 2.02130 2.14013 2.44971 2.85978 3.24378 3.28354 3.41784 3.45646 3.74798 3.81822 3.94389 4.01560 4.22191 4.28204 4.32283 4.37117 4.47275 4.53521 4.59414 4.69780 4.76358 4.77600 4.82196 4.92875 5.00354 5.06947 5.11189 5.28840 5.31724 5.36573 5.43234 5.46322 5.56708 5.71496 5.81204 5.88041 6.28518 6.44236 6.74917 6.93870 7.20796 7.26089 7.95619 8.37193 9.16552 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.011901 B = 0.005336 C = 0.004040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2352.168629 B = 5246.434901 C = 6928.760650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.039 4.039 3 Si 0.959 3.041 4 H -0.292 1.292 5 H -0.289 1.289 6 H -0.267 1.267 7 C -0.259 4.259 8 H 0.049 0.951 9 N -0.602 5.602 10 C 0.140 3.860 11 C -0.104 4.104 12 C -0.102 4.102 13 H 0.134 0.866 14 C 0.104 3.896 15 N -0.630 5.630 16 C 0.570 3.430 17 O -0.584 6.584 18 C -0.142 4.142 19 C -0.057 4.057 20 C -0.123 4.123 21 C -0.045 4.045 22 C 0.013 3.987 23 N -0.521 5.521 24 C 0.265 3.735 25 N -0.597 5.597 26 H 0.428 0.572 27 C 0.063 3.937 28 C 0.102 3.898 29 H 0.094 0.906 30 C 0.181 3.819 31 H 0.245 0.755 32 H 0.046 0.954 33 H 0.028 0.972 34 H 0.034 0.966 35 H 0.099 0.901 36 H 0.126 0.874 37 H 0.096 0.904 38 H 0.161 0.839 39 H 0.182 0.818 40 H 0.157 0.843 41 H 0.258 0.742 42 H 0.055 0.945 43 H -0.008 1.008 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.875 -17.599 -10.148 20.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.235 4.235 3 Si 0.787 3.213 4 H -0.220 1.220 5 H -0.215 1.215 6 H -0.191 1.191 7 C -0.389 4.389 8 H 0.067 0.933 9 N -0.326 5.326 10 C 0.014 3.986 11 C -0.143 4.143 12 C -0.121 4.121 13 H 0.152 0.848 14 C -0.017 4.017 15 N -0.364 5.364 16 C 0.362 3.638 17 O -0.465 6.465 18 C -0.148 4.148 19 C -0.076 4.076 20 C -0.143 4.143 21 C -0.064 4.064 22 C -0.105 4.105 23 N -0.241 5.241 24 C -0.022 4.022 25 N -0.207 5.207 26 H 0.268 0.732 27 C -0.050 4.050 28 C -0.002 4.002 29 H 0.112 0.888 30 C 0.055 3.945 31 H 0.054 0.946 32 H 0.065 0.935 33 H 0.046 0.954 34 H 0.053 0.947 35 H 0.117 0.883 36 H 0.143 0.857 37 H 0.114 0.886 38 H 0.179 0.821 39 H 0.200 0.800 40 H 0.175 0.825 41 H 0.273 0.727 42 H 0.073 0.927 43 H 0.010 0.990 Dipole moment (debyes) X Y Z Total from point charges 3.244 -16.871 -11.041 20.422 hybrid contribution -0.387 2.635 1.199 2.921 sum 2.857 -14.236 -9.842 17.541 Atomic orbital electron populations 1.70170 1.06505 1.25124 1.55680 1.25928 0.96222 1.01144 1.00210 0.85416 0.78420 0.80298 0.77192 1.21955 1.21476 1.19142 1.19221 0.90190 0.84896 1.44639 0.93302 1.43628 1.19141 1.09949 1.59859 1.20963 0.96477 0.87854 0.93258 1.21705 0.95163 0.98571 0.98905 1.22854 0.96924 0.95598 0.96719 0.84803 1.23738 1.04417 0.81286 0.92211 1.49439 1.56400 1.11588 1.18933 1.18156 0.78296 0.85403 0.81947 1.90799 1.58474 1.16171 1.81091 1.19030 1.03508 0.96129 0.96167 1.21640 0.97704 0.90727 0.97570 1.21297 0.97311 1.01980 0.93701 1.20869 0.96355 0.89070 1.00155 1.19551 1.00456 0.96677 0.93817 1.70511 1.23494 0.99956 1.30147 1.26282 0.92395 1.00181 0.83308 1.43512 1.40552 1.11226 1.25412 0.73185 1.19063 1.00506 0.86409 0.99049 1.22778 0.96954 0.97981 0.82499 0.88826 1.19851 0.86026 0.94117 0.94507 0.94595 0.93514 0.95384 0.94675 0.88278 0.85662 0.88604 0.82130 0.80031 0.82524 0.72657 0.92678 0.98982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.76 10.64 21.65 0.23 -58.53 16 2 C -0.04 -2.37 5.28 84.86 0.45 -1.92 16 3 Si 0.96 48.33 29.55 68.60 2.03 50.36 16 4 H -0.29 -14.75 7.11 99.48 0.71 -14.05 16 5 H -0.29 -14.38 7.11 99.48 0.71 -13.67 16 6 H -0.27 -12.71 7.11 99.48 0.71 -12.00 16 7 C -0.26 -15.28 9.43 84.03 0.79 -14.49 16 8 H 0.05 2.89 7.83 -2.91 -0.02 2.87 16 9 N -0.60 -31.49 3.02 -707.26 -2.14 -33.63 16 10 C 0.14 5.69 6.46 86.42 0.56 6.25 16 11 C -0.10 -3.15 5.71 30.67 0.17 -2.98 16 12 C -0.10 -2.61 4.57 -10.49 -0.05 -2.66 16 13 H 0.13 2.45 8.14 -2.39 -0.02 2.43 16 14 C 0.10 2.15 5.46 81.19 0.44 2.59 16 15 N -0.63 -21.70 3.28 -869.32 -2.85 -24.54 16 16 C 0.57 23.33 7.81 86.69 0.68 24.01 16 17 O -0.58 -30.47 14.91 -4.01 -0.06 -30.53 16 18 C -0.14 -4.68 5.85 -20.07 -0.12 -4.80 16 19 C -0.06 -1.25 8.86 22.57 0.20 -1.05 16 20 C -0.12 -2.09 9.99 22.20 0.22 -1.87 16 21 C -0.05 -0.98 10.09 22.53 0.23 -0.75 16 22 C 0.01 0.38 7.22 39.40 0.28 0.67 16 23 N -0.52 -15.51 11.28 -192.03 -2.17 -17.68 16 24 C 0.26 6.96 12.97 180.04 2.34 9.30 16 25 N -0.60 -19.68 6.04 -190.51 -1.15 -20.83 16 26 H 0.43 15.34 8.06 -92.71 -0.75 14.59 16 27 C 0.06 2.16 6.87 39.25 0.27 2.43 16 28 C 0.10 3.73 4.03 38.70 0.16 3.89 16 29 H 0.09 3.00 8.14 -2.39 -0.02 2.98 16 30 C 0.18 9.30 4.52 85.91 0.39 9.69 16 31 H 0.24 15.12 8.31 -92.71 -0.77 14.35 16 32 H 0.05 1.93 7.90 -2.39 -0.02 1.91 16 33 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.03 1.23 7.69 -2.39 -0.02 1.21 16 35 H 0.10 2.18 8.14 -2.38 -0.02 2.16 16 36 H 0.13 1.56 8.00 -2.39 -0.02 1.54 16 37 H 0.10 1.66 7.61 -2.39 -0.02 1.65 16 38 H 0.16 2.55 5.64 -2.91 -0.02 2.53 16 39 H 0.18 1.36 8.06 -2.91 -0.02 1.34 16 40 H 0.16 2.52 8.06 -2.91 -0.02 2.49 16 41 H 0.26 3.93 8.06 -2.91 -0.02 3.91 16 42 H 0.05 3.41 5.05 -2.39 -0.01 3.40 16 43 H -0.01 -0.43 7.95 -2.39 -0.02 -0.45 16 Total: -1.00 -88.01 345.95 1.22 -86.79 By element: Atomic # 1 Polarization: 19.97 SS G_CDS: 0.31 Total: 20.28 kcal Atomic # 6 Polarization: 21.30 SS G_CDS: 7.01 Total: 28.32 kcal Atomic # 7 Polarization: -147.15 SS G_CDS: -8.07 Total: -155.22 kcal Atomic # 8 Polarization: -30.47 SS G_CDS: -0.06 Total: -30.53 kcal Atomic # 14 Polarization: 48.33 SS G_CDS: 2.03 Total: 50.36 kcal Total: -88.01 1.22 -86.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084735477.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 176.192 kcal (2) G-P(sol) polarization free energy of solvation -88.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.790 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds