Wall clock time and date at job start Tue Mar 31 2020 15:00:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86796 * 120.00140 * 2 1 4 4 H 1.48505 * 109.47210 * 270.00062 * 3 2 1 5 5 H 1.48503 * 109.47120 * 29.99583 * 3 2 1 6 6 H 1.48495 * 109.47247 * 149.99876 * 3 2 1 7 7 C 1.38810 * 119.99648 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99567 * 195.85651 * 7 2 1 9 9 N 1.36940 * 120.00305 * 15.85867 * 7 2 1 10 10 C 1.46540 * 119.73609 * 205.63768 * 9 7 2 11 11 C 1.53142 * 108.25055 * 236.39553 * 10 9 7 12 12 C 1.53068 * 109.21536 * 301.59136 * 11 10 9 13 13 H 1.08997 * 113.84344 * 275.71737 * 12 11 10 14 14 C 1.54351 * 111.57126 * 142.38137 * 12 11 10 15 15 N 1.47297 * 87.50329 * 274.17080 * 14 12 11 16 16 C 1.34772 * 136.54156 * 151.47459 * 15 14 12 17 17 O 1.21597 * 119.99823 * 185.28369 * 16 15 14 18 18 C 1.47579 * 120.00133 * 5.01277 * 16 15 14 19 19 C 1.41753 * 120.01104 * 6.79738 * 18 16 15 20 20 C 1.35634 * 119.53992 * 179.76227 * 19 18 16 21 21 C 1.41182 * 119.50339 * 0.51467 * 20 19 18 22 22 N 1.32413 * 132.11474 * 179.73901 * 21 20 19 23 23 C 1.33603 * 109.22140 * 179.97438 * 22 21 20 24 24 C 1.34993 * 108.66099 * 0.02562 * 23 22 21 25 25 N 1.37013 * 107.14283 * 0.02562 * 24 23 22 26 26 C 1.35923 * 132.41731 * 180.02562 * 25 24 23 27 27 C 1.46466 * 86.90917 * 331.22212 * 15 14 12 28 28 H 1.09002 * 111.43919 * 277.31662 * 27 15 14 29 29 C 1.45694 * 119.73811 * 25.61259 * 9 7 2 30 30 H 0.96996 * 119.99998 * 0.02562 * 1 2 3 31 31 H 1.09000 * 109.70859 * 356.08815 * 10 9 7 32 32 H 1.08999 * 109.70673 * 116.66464 * 10 9 7 33 33 H 1.08993 * 109.51660 * 61.51905 * 11 10 9 34 34 H 1.09001 * 109.51198 * 181.62194 * 11 10 9 35 35 H 1.08999 * 113.51858 * 159.53969 * 14 12 11 36 36 H 1.08994 * 113.62905 * 28.82041 * 14 12 11 37 37 H 1.08005 * 120.23364 * 0.02562 * 19 18 16 38 38 H 1.07992 * 120.24809 * 180.22744 * 20 19 18 39 39 H 1.07993 * 125.66864 * 179.97438 * 23 22 21 40 40 H 1.07998 * 126.43174 * 179.97438 * 24 23 22 41 41 H 1.08003 * 119.75255 * 0.02562 * 26 25 24 42 42 H 1.09000 * 108.79196 * 19.13834 * 29 9 7 43 43 H 1.08994 * 108.79202 * 260.92343 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4401 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0594 -1.2198 0.2561 9 7 1.3646 -2.3657 -0.3230 10 6 1.8662 -3.6427 0.1919 11 6 2.1396 -4.5658 -0.9990 12 6 0.8481 -4.7517 -1.7993 13 1 0.1964 -5.5333 -1.4089 14 6 1.1235 -4.8029 -3.3172 15 7 1.0556 -3.3315 -3.3139 16 6 1.5896 -2.3259 -4.0350 17 8 1.3974 -1.1717 -3.7041 18 6 2.4126 -2.6257 -5.2228 19 6 2.5237 -3.9594 -5.6900 20 6 3.2787 -4.2235 -6.7854 21 6 3.9514 -3.1672 -7.4373 22 7 4.7415 -3.1390 -8.4996 23 6 5.1333 -1.8814 -8.7231 24 6 4.5830 -1.0840 -7.7831 25 7 3.8334 -1.8851 -6.9624 26 6 3.0727 -1.6198 -5.8676 27 6 0.1406 -3.4553 -2.1769 28 1 -0.8796 -3.6523 -2.5061 29 6 0.1842 -2.3241 -1.1760 30 1 -0.4850 0.8400 -0.0004 31 1 2.7887 -3.4777 0.7486 32 1 1.1192 -4.0948 0.8443 33 1 2.9026 -4.1205 -1.6373 34 1 2.4870 -5.5336 -0.6372 35 1 0.3238 -5.2740 -3.8887 36 1 2.1097 -5.1924 -3.5694 37 1 2.0074 -4.7592 -5.1799 38 1 3.3684 -5.2348 -7.1534 39 1 5.7829 -1.5569 -9.5224 40 1 4.7105 -0.0153 -7.6940 41 1 2.9878 -0.6053 -5.5069 42 1 0.1742 -1.3772 -1.7158 43 1 -0.7050 -2.3767 -0.5478 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001084767804.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:00:15 Heat of formation + Delta-G solvation = 144.119805 kcal Electronic energy + Delta-G solvation = -28221.150803 eV Core-core repulsion = 24463.744243 eV Total energy + Delta-G solvation = -3757.406560 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.94909 -40.74310 -38.34800 -36.70105 -35.30757 -33.87707 -32.20070 -30.86984 -30.17750 -28.99757 -28.75256 -27.04930 -24.50369 -24.05754 -23.10940 -22.72314 -21.87151 -21.17016 -20.15394 -18.44285 -17.74249 -17.21892 -16.62464 -16.12108 -16.11749 -15.77643 -15.46184 -14.73962 -14.65004 -14.29845 -13.99708 -13.82847 -13.62323 -13.57164 -13.37907 -12.85769 -12.69556 -12.52623 -12.05432 -11.81671 -11.77453 -11.51772 -11.22083 -11.10967 -10.69040 -10.68405 -10.52014 -10.32186 -10.21108 -9.92889 -9.81042 -9.68569 -9.12156 -9.01301 -8.33552 -8.26832 -8.02279 -6.61471 -5.68220 -3.09689 0.47600 0.94467 2.30774 2.52795 3.12200 3.14859 3.46095 3.51834 3.53698 3.69855 4.02708 4.33058 4.46966 4.52238 4.60013 4.66334 4.76523 5.07536 5.10386 5.15359 5.27681 5.32996 5.41717 5.44438 5.56791 5.63143 5.67913 5.70630 5.83436 5.89630 6.06736 6.08043 6.23339 6.26509 6.34975 6.42264 6.45095 6.54303 6.75353 6.82336 6.96777 7.43762 7.65939 7.72337 7.91059 8.15551 8.54011 8.55930 9.33432 9.97725 10.45195 11.40235 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.013245 B = 0.004451 C = 0.003605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2113.558215 B = 6289.796519 C = 7764.441637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.013 3.987 3 Si 0.899 3.101 4 H -0.287 1.287 5 H -0.292 1.292 6 H -0.281 1.281 7 C -0.252 4.252 8 H 0.062 0.938 9 N -0.584 5.584 10 C 0.148 3.852 11 C -0.116 4.116 12 C -0.112 4.112 13 H 0.095 0.905 14 C 0.086 3.914 15 N -0.624 5.624 16 C 0.592 3.408 17 O -0.506 6.506 18 C -0.144 4.144 19 C -0.086 4.086 20 C -0.090 4.090 21 C 0.230 3.770 22 N -0.497 5.497 23 C 0.030 3.970 24 C -0.096 4.096 25 N -0.365 5.365 26 C 0.126 3.874 27 C 0.121 3.879 28 H 0.076 0.924 29 C 0.167 3.833 30 H 0.252 0.748 31 H 0.056 0.944 32 H 0.020 0.980 33 H 0.060 0.940 34 H 0.056 0.944 35 H 0.083 0.917 36 H 0.079 0.921 37 H 0.155 0.845 38 H 0.154 0.846 39 H 0.182 0.818 40 H 0.185 0.815 41 H 0.179 0.821 42 H 0.101 0.899 43 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.932 -10.867 -12.588 17.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.185 4.185 3 Si 0.729 3.271 4 H -0.214 1.214 5 H -0.219 1.219 6 H -0.207 1.207 7 C -0.382 4.382 8 H 0.079 0.921 9 N -0.306 5.306 10 C 0.021 3.979 11 C -0.156 4.156 12 C -0.131 4.131 13 H 0.113 0.887 14 C -0.038 4.038 15 N -0.359 5.359 16 C 0.379 3.621 17 O -0.382 6.382 18 C -0.151 4.151 19 C -0.109 4.109 20 C -0.110 4.110 21 C -0.014 4.014 22 N -0.217 5.217 23 C -0.120 4.120 24 C -0.226 4.226 25 N -0.037 5.037 26 C 0.001 3.999 27 C 0.017 3.983 28 H 0.094 0.906 29 C 0.041 3.959 30 H 0.062 0.938 31 H 0.074 0.926 32 H 0.038 0.962 33 H 0.079 0.921 34 H 0.074 0.926 35 H 0.101 0.899 36 H 0.097 0.903 37 H 0.172 0.828 38 H 0.172 0.828 39 H 0.199 0.801 40 H 0.202 0.798 41 H 0.197 0.803 42 H 0.119 0.881 43 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 4.071 -10.479 -13.026 17.206 hybrid contribution 0.220 1.654 0.196 1.680 sum 4.292 -8.825 -12.830 16.153 Atomic orbital electron populations 1.70012 1.05209 1.25279 1.54278 1.24890 0.95190 0.98071 1.00368 0.86346 0.78980 0.84067 0.77663 1.21395 1.21886 1.20708 1.19077 0.92059 0.84783 1.42262 0.92062 1.43440 1.31963 1.01518 1.53685 1.20725 0.97466 0.87193 0.92483 1.21846 0.95053 0.99445 0.99232 1.22819 0.98952 0.97808 0.93541 0.88722 1.23585 1.01411 0.81436 0.97318 1.49191 1.47690 1.05723 1.33315 1.16964 0.79906 0.84128 0.81053 1.90921 1.59884 1.18867 1.68486 1.19548 1.02932 0.93371 0.99206 1.21620 0.97685 0.96190 0.95422 1.20158 0.97635 0.97626 0.95593 1.21170 1.00865 0.84546 0.94796 1.70734 1.14774 1.21843 1.14333 1.22521 1.01336 0.88475 0.99642 1.22800 1.04295 0.98560 0.96899 1.42828 1.31172 1.10165 1.19554 1.21758 0.90664 1.01838 0.85677 1.22730 0.92111 0.97054 0.86400 0.90616 1.20176 0.89398 0.96195 0.90123 0.93827 0.92596 0.96219 0.92119 0.92561 0.89932 0.90336 0.82808 0.82807 0.80090 0.79801 0.80348 0.88071 0.95096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.90 11.05 55.49 0.61 -26.29 16 2 C 0.01 0.39 4.90 -17.43 -0.09 0.30 16 3 Si 0.90 22.99 29.58 -169.99 -5.03 17.96 16 4 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 5 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 6 H -0.28 -6.99 7.11 56.52 0.40 -6.58 16 7 C -0.25 -7.09 9.51 -15.06 -0.14 -7.24 16 8 H 0.06 1.72 7.84 -52.48 -0.41 1.30 16 9 N -0.58 -14.47 3.02 -174.90 -0.53 -15.00 16 10 C 0.15 2.95 6.46 -3.95 -0.03 2.92 16 11 C -0.12 -1.82 5.71 -26.62 -0.15 -1.97 16 12 C -0.11 -1.54 4.57 -90.17 -0.41 -1.96 16 13 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 14 C 0.09 0.99 5.55 -11.39 -0.06 0.92 16 15 N -0.62 -10.39 3.30 -188.74 -0.62 -11.01 16 16 C 0.59 11.03 7.95 -12.45 -0.10 10.93 16 17 O -0.51 -11.93 15.47 5.28 0.08 -11.84 16 18 C -0.14 -2.15 5.84 -105.37 -0.61 -2.77 16 19 C -0.09 -1.01 9.13 -39.17 -0.36 -1.37 16 20 C -0.09 -1.04 10.09 -39.40 -0.40 -1.44 16 21 C 0.23 3.19 7.81 -155.93 -1.22 1.98 16 22 N -0.50 -7.03 11.31 -12.72 -0.14 -7.17 16 23 C 0.03 0.35 11.82 -17.93 -0.21 0.14 16 24 C -0.10 -1.09 11.75 -16.39 -0.19 -1.28 16 25 N -0.37 -4.98 2.93 -62.31 -0.18 -5.16 16 26 C 0.13 1.82 10.49 -16.36 -0.17 1.64 16 27 C 0.12 2.13 4.03 -77.69 -0.31 1.82 16 28 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 29 C 0.17 3.98 4.56 -5.43 -0.02 3.96 16 30 H 0.25 7.33 8.31 -40.82 -0.34 7.00 16 31 H 0.06 1.12 7.87 -51.93 -0.41 0.71 16 32 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 33 H 0.06 1.06 7.69 -51.93 -0.40 0.66 16 34 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.08 0.78 6.57 -51.93 -0.34 0.44 16 37 H 0.15 1.45 4.22 -52.48 -0.22 1.23 16 38 H 0.15 1.34 8.06 -52.49 -0.42 0.92 16 39 H 0.18 1.41 8.06 -52.49 -0.42 0.99 16 40 H 0.18 1.50 8.06 -52.49 -0.42 1.08 16 41 H 0.18 2.55 7.57 -52.48 -0.40 2.15 16 42 H 0.10 2.85 5.01 -51.93 -0.26 2.59 16 43 H 0.03 0.80 7.99 -51.93 -0.41 0.38 16 LS Contribution 346.14 15.07 5.22 5.22 Total: -1.00 -35.55 346.14 -10.45 -46.00 By element: Atomic # 1 Polarization: 6.06 SS G_CDS: -5.37 Total: 0.69 kcal Atomic # 6 Polarization: 11.09 SS G_CDS: -4.48 Total: 6.61 kcal Atomic # 7 Polarization: -63.77 SS G_CDS: -0.87 Total: -64.63 kcal Atomic # 8 Polarization: -11.93 SS G_CDS: 0.08 Total: -11.84 kcal Atomic # 14 Polarization: 22.99 SS G_CDS: -5.03 Total: 17.96 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -35.55 -10.45 -46.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084767804.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 190.122 kcal (2) G-P(sol) polarization free energy of solvation -35.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 154.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.002 kcal (6) G-S(sol) free energy of system = (1) + (5) 144.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds