Wall clock time and date at job start Tue Mar 31 2020 15:00:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86796 * 120.00140 * 2 1 4 4 H 1.48505 * 109.47210 * 270.00062 * 3 2 1 5 5 H 1.48503 * 109.47120 * 29.99583 * 3 2 1 6 6 H 1.48495 * 109.47247 * 149.99876 * 3 2 1 7 7 C 1.38810 * 119.99648 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99567 * 195.85651 * 7 2 1 9 9 N 1.36940 * 120.00305 * 15.85867 * 7 2 1 10 10 C 1.46540 * 119.73609 * 205.63768 * 9 7 2 11 11 C 1.53142 * 108.25055 * 236.39553 * 10 9 7 12 12 C 1.53068 * 109.21536 * 301.59136 * 11 10 9 13 13 H 1.08997 * 113.84344 * 275.71737 * 12 11 10 14 14 C 1.54351 * 111.57126 * 142.38137 * 12 11 10 15 15 N 1.47297 * 87.50329 * 274.17080 * 14 12 11 16 16 C 1.34772 * 136.54156 * 151.47459 * 15 14 12 17 17 O 1.21597 * 119.99823 * 185.28369 * 16 15 14 18 18 C 1.47579 * 120.00133 * 5.01277 * 16 15 14 19 19 C 1.41753 * 120.01104 * 6.79738 * 18 16 15 20 20 C 1.35634 * 119.53992 * 179.76227 * 19 18 16 21 21 C 1.41182 * 119.50339 * 0.51467 * 20 19 18 22 22 N 1.32413 * 132.11474 * 179.73901 * 21 20 19 23 23 C 1.33603 * 109.22140 * 179.97438 * 22 21 20 24 24 C 1.34993 * 108.66099 * 0.02562 * 23 22 21 25 25 N 1.37013 * 107.14283 * 0.02562 * 24 23 22 26 26 C 1.35923 * 132.41731 * 180.02562 * 25 24 23 27 27 C 1.46466 * 86.90917 * 331.22212 * 15 14 12 28 28 H 1.09002 * 111.43919 * 277.31662 * 27 15 14 29 29 C 1.45694 * 119.73811 * 25.61259 * 9 7 2 30 30 H 0.96996 * 119.99998 * 0.02562 * 1 2 3 31 31 H 1.09000 * 109.70859 * 356.08815 * 10 9 7 32 32 H 1.08999 * 109.70673 * 116.66464 * 10 9 7 33 33 H 1.08993 * 109.51660 * 61.51905 * 11 10 9 34 34 H 1.09001 * 109.51198 * 181.62194 * 11 10 9 35 35 H 1.08999 * 113.51858 * 159.53969 * 14 12 11 36 36 H 1.08994 * 113.62905 * 28.82041 * 14 12 11 37 37 H 1.08005 * 120.23364 * 0.02562 * 19 18 16 38 38 H 1.07992 * 120.24809 * 180.22744 * 20 19 18 39 39 H 1.07993 * 125.66864 * 179.97438 * 23 22 21 40 40 H 1.07998 * 126.43174 * 179.97438 * 24 23 22 41 41 H 1.08003 * 119.75255 * 0.02562 * 26 25 24 42 42 H 1.09000 * 108.79196 * 19.13834 * 29 9 7 43 43 H 1.08994 * 108.79202 * 260.92343 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4401 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0594 -1.2198 0.2561 9 7 1.3646 -2.3657 -0.3230 10 6 1.8662 -3.6427 0.1919 11 6 2.1396 -4.5658 -0.9990 12 6 0.8481 -4.7517 -1.7993 13 1 0.1964 -5.5333 -1.4089 14 6 1.1235 -4.8029 -3.3172 15 7 1.0556 -3.3315 -3.3139 16 6 1.5896 -2.3259 -4.0350 17 8 1.3974 -1.1717 -3.7041 18 6 2.4126 -2.6257 -5.2228 19 6 2.5237 -3.9594 -5.6900 20 6 3.2787 -4.2235 -6.7854 21 6 3.9514 -3.1672 -7.4373 22 7 4.7415 -3.1390 -8.4996 23 6 5.1333 -1.8814 -8.7231 24 6 4.5830 -1.0840 -7.7831 25 7 3.8334 -1.8851 -6.9624 26 6 3.0727 -1.6198 -5.8676 27 6 0.1406 -3.4553 -2.1769 28 1 -0.8796 -3.6523 -2.5061 29 6 0.1842 -2.3241 -1.1760 30 1 -0.4850 0.8400 -0.0004 31 1 2.7887 -3.4777 0.7486 32 1 1.1192 -4.0948 0.8443 33 1 2.9026 -4.1205 -1.6373 34 1 2.4870 -5.5336 -0.6372 35 1 0.3238 -5.2740 -3.8887 36 1 2.1097 -5.1924 -3.5694 37 1 2.0074 -4.7592 -5.1799 38 1 3.3684 -5.2348 -7.1534 39 1 5.7829 -1.5569 -9.5224 40 1 4.7105 -0.0153 -7.6940 41 1 2.9878 -0.6053 -5.5069 42 1 0.1742 -1.3772 -1.7158 43 1 -0.7050 -2.3767 -0.5478 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001084767804.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:00:14 Heat of formation + Delta-G solvation = 120.882310 kcal Electronic energy + Delta-G solvation = -28222.158456 eV Core-core repulsion = 24463.744243 eV Total energy + Delta-G solvation = -3758.414213 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.90818 -42.02294 -39.64145 -37.87299 -37.07993 -34.86051 -33.97093 -32.09595 -31.83639 -30.23795 -29.82837 -28.63020 -25.77873 -25.65224 -24.19110 -24.06706 -22.84491 -22.58750 -21.45917 -19.68772 -19.25780 -18.36437 -18.00543 -17.41627 -17.27554 -17.01722 -16.95511 -16.20107 -15.77168 -15.61859 -15.55509 -15.14005 -14.99092 -14.84309 -14.59619 -14.28149 -14.03518 -13.90908 -13.56123 -13.17021 -12.95222 -12.85013 -12.69776 -12.68490 -12.30283 -12.20592 -12.13083 -11.96811 -11.72995 -11.47684 -11.30491 -11.06784 -10.74499 -10.42436 -10.03908 -9.54525 -8.97876 -8.65450 -7.85202 -5.27814 -0.56746 0.00034 1.29060 1.34218 1.41207 1.44581 1.51725 1.96465 2.05602 2.48180 2.55649 3.11692 3.28428 3.33295 3.44212 3.47785 3.62929 3.74880 3.84956 3.97080 4.11789 4.27372 4.34153 4.42837 4.48515 4.53283 4.60675 4.70896 4.73710 4.80412 4.82054 4.92820 4.96561 4.97654 5.10322 5.15041 5.31803 5.34715 5.44355 5.56550 5.57630 5.72320 5.83447 5.84347 6.40574 6.71472 6.87930 7.18548 7.20650 7.98296 8.35746 9.18993 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.013245 B = 0.004451 C = 0.003605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2113.558215 B = 6289.796519 C = 7764.441637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.040 4.040 3 Si 0.950 3.050 4 H -0.300 1.300 5 H -0.290 1.290 6 H -0.266 1.266 7 C -0.255 4.255 8 H 0.056 0.944 9 N -0.601 5.601 10 C 0.138 3.862 11 C -0.106 4.106 12 C -0.100 4.100 13 H 0.137 0.863 14 C 0.098 3.902 15 N -0.629 5.629 16 C 0.582 3.418 17 O -0.577 6.577 18 C -0.148 4.148 19 C -0.081 4.081 20 C -0.079 4.079 21 C 0.206 3.794 22 N -0.518 5.518 23 C 0.027 3.973 24 C -0.103 4.103 25 N -0.372 5.372 26 C 0.115 3.885 27 C 0.106 3.894 28 H 0.100 0.900 29 C 0.180 3.820 30 H 0.244 0.756 31 H 0.047 0.953 32 H 0.028 0.972 33 H 0.040 0.960 34 H 0.101 0.899 35 H 0.129 0.871 36 H 0.106 0.894 37 H 0.184 0.816 38 H 0.188 0.812 39 H 0.215 0.785 40 H 0.209 0.791 41 H 0.166 0.834 42 H 0.049 0.951 43 H -0.004 1.004 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.992 -14.716 -14.194 21.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.236 4.236 3 Si 0.779 3.221 4 H -0.228 1.228 5 H -0.216 1.216 6 H -0.191 1.191 7 C -0.385 4.385 8 H 0.074 0.926 9 N -0.325 5.325 10 C 0.013 3.987 11 C -0.145 4.145 12 C -0.119 4.119 13 H 0.154 0.846 14 C -0.023 4.023 15 N -0.363 5.363 16 C 0.372 3.628 17 O -0.457 6.457 18 C -0.155 4.155 19 C -0.104 4.104 20 C -0.099 4.099 21 C -0.037 4.037 22 N -0.239 5.239 23 C -0.122 4.122 24 C -0.232 4.232 25 N -0.045 5.045 26 C -0.010 4.010 27 C 0.002 3.998 28 H 0.118 0.882 29 C 0.053 3.947 30 H 0.053 0.947 31 H 0.065 0.935 32 H 0.046 0.954 33 H 0.059 0.941 34 H 0.119 0.881 35 H 0.147 0.853 36 H 0.124 0.876 37 H 0.201 0.799 38 H 0.205 0.795 39 H 0.232 0.768 40 H 0.226 0.774 41 H 0.183 0.817 42 H 0.067 0.933 43 H 0.014 0.986 Dipole moment (debyes) X Y Z Total from point charges 5.160 -14.420 -14.631 21.181 hybrid contribution -0.061 2.841 0.705 2.928 sum 5.099 -11.579 -13.926 18.815 Atomic orbital electron populations 1.70165 1.06310 1.25073 1.56165 1.25523 0.95901 1.00739 1.01389 0.85525 0.78660 0.81099 0.76787 1.22843 1.21612 1.19063 1.19341 0.92014 0.86474 1.40708 0.92615 1.43688 1.31934 1.02340 1.54499 1.20973 0.96955 0.86041 0.94701 1.21723 0.95762 0.99990 0.96987 1.22863 0.97802 0.95878 0.95372 0.84557 1.23891 1.04698 0.77831 0.95849 1.49352 1.46570 1.08155 1.32189 1.17557 0.79843 0.83629 0.81809 1.90886 1.62549 1.21778 1.70530 1.19355 1.02812 0.95233 0.98089 1.21759 0.98035 0.94963 0.95643 1.20573 0.96090 0.98494 0.94710 1.21742 1.01522 0.85192 0.95257 1.70741 1.15335 1.23137 1.14688 1.23134 1.01207 0.87637 1.00191 1.23417 1.03541 0.99861 0.96378 1.42959 1.31302 1.10798 1.19408 1.21615 0.91491 1.01518 0.86422 1.22775 0.94501 0.96674 0.85837 0.88242 1.19798 0.87745 0.96772 0.90349 0.94702 0.93470 0.95421 0.94107 0.88079 0.85293 0.87648 0.79874 0.79490 0.76850 0.77390 0.81663 0.93260 0.98623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.83 11.05 21.65 0.24 -58.59 16 2 C -0.04 -2.42 4.90 84.86 0.42 -2.00 16 3 Si 0.95 49.54 29.58 68.60 2.03 51.56 16 4 H -0.30 -16.19 7.11 99.48 0.71 -15.49 16 5 H -0.29 -14.84 7.11 99.48 0.71 -14.13 16 6 H -0.27 -13.02 7.11 99.48 0.71 -12.31 16 7 C -0.25 -14.93 9.51 84.03 0.80 -14.13 16 8 H 0.06 3.24 7.84 -2.91 -0.02 3.22 16 9 N -0.60 -30.70 3.02 -707.26 -2.14 -32.84 16 10 C 0.14 5.40 6.46 86.42 0.56 5.96 16 11 C -0.11 -2.93 5.71 30.66 0.17 -2.75 16 12 C -0.10 -2.30 4.57 -10.50 -0.05 -2.35 16 13 H 0.14 2.15 8.14 -2.39 -0.02 2.13 16 14 C 0.10 1.71 5.55 81.18 0.45 2.16 16 15 N -0.63 -19.91 3.30 -869.32 -2.87 -22.78 16 16 C 0.58 22.08 7.95 86.71 0.69 22.77 16 17 O -0.58 -29.16 15.47 -4.02 -0.06 -29.23 16 18 C -0.15 -4.35 5.84 -20.35 -0.12 -4.47 16 19 C -0.08 -1.64 9.13 22.54 0.21 -1.43 16 20 C -0.08 -1.55 10.09 22.39 0.23 -1.33 16 21 C 0.21 5.33 7.81 134.16 1.05 6.38 16 22 N -0.52 -13.63 11.31 -194.15 -2.20 -15.82 16 23 C 0.03 0.58 11.82 83.68 0.99 1.57 16 24 C -0.10 -2.24 11.75 83.14 0.98 -1.26 16 25 N -0.37 -9.90 2.93 -351.03 -1.03 -10.93 16 26 C 0.12 3.41 10.49 83.65 0.88 4.29 16 27 C 0.11 3.61 4.03 38.69 0.16 3.77 16 28 H 0.10 2.91 8.14 -2.39 -0.02 2.89 16 29 C 0.18 8.91 4.56 85.91 0.39 9.31 16 30 H 0.24 15.14 8.31 -92.71 -0.77 14.37 16 31 H 0.05 1.87 7.87 -2.39 -0.02 1.85 16 32 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.04 1.30 7.69 -2.39 -0.02 1.29 16 34 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 35 H 0.13 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.11 1.39 6.57 -2.39 -0.02 1.37 16 37 H 0.18 2.44 4.22 -2.91 -0.01 2.43 16 38 H 0.19 2.35 8.06 -2.91 -0.02 2.33 16 39 H 0.21 2.74 8.06 -2.91 -0.02 2.72 16 40 H 0.21 3.18 8.06 -2.91 -0.02 3.15 16 41 H 0.17 5.19 7.57 -2.91 -0.02 5.16 16 42 H 0.05 2.97 5.01 -2.39 -0.01 2.95 16 43 H 0.00 -0.22 7.99 -2.39 -0.02 -0.24 16 Total: -1.00 -87.04 346.14 2.80 -84.24 By element: Atomic # 1 Polarization: 6.87 SS G_CDS: 1.04 Total: 7.91 kcal Atomic # 6 Polarization: 18.68 SS G_CDS: 7.79 Total: 26.47 kcal Atomic # 7 Polarization: -132.96 SS G_CDS: -8.00 Total: -140.96 kcal Atomic # 8 Polarization: -29.16 SS G_CDS: -0.06 Total: -29.23 kcal Atomic # 14 Polarization: 49.54 SS G_CDS: 2.03 Total: 51.56 kcal Total: -87.04 2.80 -84.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084767804.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 205.118 kcal (2) G-P(sol) polarization free energy of solvation -87.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.235 kcal (6) G-S(sol) free energy of system = (1) + (5) 120.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds