Wall clock time and date at job start Tue Mar 31 2020 14:50:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86798 * 120.00211 * 2 1 4 4 H 1.48506 * 109.47297 * 89.99752 * 3 2 1 5 5 H 1.48503 * 109.47261 * 329.99933 * 3 2 1 6 6 H 1.48500 * 109.47454 * 209.99926 * 3 2 1 7 7 C 1.38817 * 120.00154 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99635 * 359.97438 * 7 2 1 9 9 N 1.36932 * 120.00011 * 180.02562 * 7 2 1 10 10 C 1.46499 * 119.99549 * 179.97438 * 9 7 2 11 11 H 1.08999 * 112.85089 * 336.19394 * 10 9 7 12 12 C 1.53781 * 113.61311 * 107.50716 * 10 9 7 13 13 C 1.53784 * 87.08032 * 139.97759 * 12 10 9 14 14 H 1.09003 * 113.69124 * 89.12928 * 13 12 10 15 15 C 1.52998 * 113.61159 * 220.01306 * 13 12 10 16 16 N 1.46499 * 109.47562 * 272.49884 * 15 13 12 17 17 C 1.34769 * 120.00181 * 180.02562 * 16 15 13 18 18 O 1.21502 * 120.00315 * 359.97438 * 17 16 15 19 19 C 1.48284 * 120.00214 * 179.97438 * 17 16 15 20 20 C 1.40371 * 119.19179 * 179.72811 * 19 17 16 21 21 C 1.36554 * 119.82756 * 179.78222 * 20 19 17 22 22 C 1.40551 * 118.05895 * 0.45629 * 21 20 19 23 23 C 1.40520 * 122.20970 * 179.79102 * 22 21 20 24 24 C 1.36263 * 118.68276 * 180.02562 * 23 22 21 25 25 N 1.32586 * 121.80402 * 359.97438 * 24 23 22 26 26 C 1.31122 * 122.87590 * 0.02562 * 25 24 23 27 27 C 1.40856 * 119.95828 * 359.97438 * 26 25 24 28 28 N 1.31894 * 119.18519 * 359.97438 * 19 17 16 29 29 C 1.53775 * 87.08376 * 334.56706 * 13 12 10 30 30 H 0.96998 * 119.99442 * 359.97438 * 1 2 3 31 31 H 0.96993 * 120.00149 * 359.97438 * 9 7 2 32 32 H 1.09001 * 113.61109 * 254.52603 * 12 10 9 33 33 H 1.08996 * 113.61745 * 25.42627 * 12 10 9 34 34 H 1.09001 * 109.47095 * 32.50102 * 15 13 12 35 35 H 1.09006 * 109.47009 * 152.49882 * 15 13 12 36 36 H 0.97000 * 119.99679 * 0.02562 * 16 15 13 37 37 H 1.08002 * 120.08450 * 0.02562 * 20 19 17 38 38 H 1.07992 * 120.96991 * 180.22237 * 21 20 19 39 39 H 1.07999 * 120.65783 * 359.97166 * 23 22 21 40 40 H 1.07998 * 119.09377 * 180.02562 * 24 23 22 41 41 H 1.08002 * 120.01628 * 180.02562 * 26 25 24 42 42 H 1.09004 * 113.61073 * 270.89043 * 29 13 12 43 43 H 1.09000 * 113.61731 * 139.98178 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 1.4001 5 1 1.4477 2.6527 -0.7001 6 1 3.5478 1.4401 -0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 1.4703 -2.1375 -0.0005 9 7 3.3796 -1.2021 0.0000 10 6 4.1121 -2.4709 0.0000 11 1 3.5276 -3.2970 0.4050 12 6 4.7876 -2.7922 -1.3436 13 6 5.9847 -3.3092 -0.5284 14 1 5.9142 -4.3654 -0.2685 15 6 7.3418 -2.9342 -1.1273 16 7 7.7446 -3.9529 -2.1000 17 6 8.9147 -3.8314 -2.7576 18 8 9.6353 -2.8767 -2.5441 19 6 9.3228 -4.8627 -3.7418 20 6 10.5423 -4.7162 -4.4213 21 6 10.9329 -5.6605 -5.3270 22 6 10.0787 -6.7537 -5.5524 23 6 10.3920 -7.7728 -6.4677 24 6 9.5111 -8.7996 -6.6301 25 7 8.3746 -8.8594 -5.9498 26 6 8.0167 -7.9456 -5.0802 27 6 8.8551 -6.8405 -4.8357 28 7 8.5285 -5.8927 -3.9608 29 6 5.5258 -2.3661 0.5961 30 1 -0.4849 0.8401 0.0004 31 1 3.8646 -0.3622 0.0004 32 1 4.2788 -3.5698 -1.9132 33 1 5.0147 -1.9088 -1.9404 34 1 7.2648 -1.9673 -1.6246 35 1 8.0859 -2.8760 -0.3329 36 1 7.1692 -4.7149 -2.2708 37 1 11.1719 -3.8608 -4.2253 38 1 11.8690 -5.5681 -5.8575 39 1 11.3124 -7.7424 -7.0319 40 1 9.7454 -9.5866 -7.3315 41 1 7.0799 -8.0407 -4.5512 42 1 5.9546 -1.3661 0.5295 43 1 5.6129 -2.7996 1.5924 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086150018.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:50:06 Heat of formation + Delta-G solvation = 66.999666 kcal Electronic energy + Delta-G solvation = -25606.150842 eV Core-core repulsion = 21845.400102 eV Total energy + Delta-G solvation = -3760.750740 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.80302 -40.04983 -38.78297 -38.04334 -35.01542 -34.32179 -33.32707 -32.09045 -31.13753 -30.67061 -27.94597 -25.89242 -25.20385 -24.80886 -23.61140 -23.22171 -21.39850 -20.99940 -19.54089 -18.94393 -18.34736 -17.98502 -17.41583 -16.59872 -16.10110 -15.85812 -15.40558 -15.24386 -15.02186 -14.80647 -14.64262 -14.43418 -14.02731 -13.67379 -13.58676 -13.45705 -12.91811 -12.67616 -12.62870 -12.23366 -11.98215 -11.64062 -11.61191 -11.42634 -11.00638 -10.88852 -10.48393 -10.38952 -10.16546 -10.06060 -9.96895 -9.87488 -9.81452 -9.55076 -9.19921 -9.00856 -8.89877 -7.27103 -5.78484 -3.13931 -0.50496 0.00672 1.22009 1.99321 2.77645 2.88503 3.37452 3.40440 3.43207 3.45344 3.55633 3.79971 3.91021 4.07710 4.15357 4.28908 4.58068 4.58661 4.72201 4.84396 4.85805 4.95766 5.09008 5.10671 5.17892 5.29120 5.38175 5.42142 5.55419 5.62577 5.69817 5.74015 5.79607 5.81570 5.97899 6.12932 6.17332 6.22128 6.32091 6.51135 6.67553 6.90780 6.97810 7.31363 7.39170 7.91394 7.98086 8.41367 9.19229 9.91959 10.11729 11.39727 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.019591 B = 0.002123 C = 0.002010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1428.911670 B =13182.957400 C =13926.829052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.004 3.996 3 Si 0.884 3.116 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.277 1.277 7 C -0.248 4.248 8 H 0.091 0.909 9 N -0.737 5.737 10 C 0.172 3.828 11 H 0.085 0.915 12 C -0.161 4.161 13 C -0.127 4.127 14 H 0.093 0.907 15 C 0.129 3.871 16 N -0.699 5.699 17 C 0.564 3.436 18 O -0.531 6.531 19 C 0.121 3.879 20 C -0.106 4.106 21 C -0.066 4.066 22 C -0.064 4.064 23 C -0.149 4.149 24 C 0.083 3.917 25 N -0.475 5.475 26 C 0.178 3.822 27 C 0.065 3.935 28 N -0.423 5.423 29 C -0.145 4.145 30 H 0.260 0.740 31 H 0.362 0.638 32 H 0.060 0.940 33 H 0.077 0.923 34 H 0.073 0.927 35 H 0.069 0.931 36 H 0.412 0.588 37 H 0.157 0.843 38 H 0.152 0.848 39 H 0.144 0.856 40 H 0.160 0.840 41 H 0.178 0.822 42 H 0.078 0.922 43 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.679 -17.116 -11.935 33.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.192 4.192 3 Si 0.715 3.285 4 H -0.210 1.210 5 H -0.217 1.217 6 H -0.203 1.203 7 C -0.377 4.377 8 H 0.109 0.891 9 N -0.377 5.377 10 C 0.060 3.940 11 H 0.103 0.897 12 C -0.202 4.202 13 C -0.146 4.146 14 H 0.111 0.889 15 C 0.006 3.994 16 N -0.350 5.350 17 C 0.348 3.652 18 O -0.407 6.407 19 C -0.034 4.034 20 C -0.128 4.128 21 C -0.092 4.092 22 C -0.071 4.071 23 C -0.169 4.169 24 C -0.059 4.059 25 N -0.184 5.184 26 C 0.004 3.996 27 C -0.061 4.061 28 N -0.136 5.136 29 C -0.185 4.185 30 H 0.070 0.930 31 H 0.195 0.805 32 H 0.078 0.922 33 H 0.095 0.905 34 H 0.091 0.909 35 H 0.087 0.913 36 H 0.248 0.752 37 H 0.174 0.826 38 H 0.169 0.831 39 H 0.162 0.838 40 H 0.178 0.822 41 H 0.195 0.805 42 H 0.097 0.903 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 24.611 -17.368 -11.582 32.272 hybrid contribution 1.698 1.652 -0.543 2.431 sum 26.310 -15.716 -12.125 32.958 Atomic orbital electron populations 1.69704 1.05122 1.25861 1.57352 1.24705 0.95273 0.97289 1.01936 0.86552 0.79233 0.84945 0.77808 1.21032 1.21730 1.20288 1.19140 0.80705 0.94759 1.43143 0.89122 1.42759 1.04085 1.02033 1.88789 1.21509 0.89519 0.90044 0.92888 0.89737 1.23923 0.95926 1.00544 0.99810 1.22650 0.92894 1.00077 0.99024 0.88881 1.21557 0.95998 0.91048 0.90780 1.45917 1.20474 1.27375 1.41240 1.17844 0.82060 0.84677 0.80629 1.90807 1.53115 1.31530 1.65259 1.21539 0.92166 0.93186 0.96494 1.21918 0.96138 1.00130 0.94627 1.21443 0.99250 0.91935 0.96527 1.19102 0.95157 0.96110 0.96744 1.21926 1.01711 0.94493 0.98765 1.22384 0.89221 0.97317 0.96958 1.67550 1.17495 1.27203 1.06132 1.23308 0.98013 0.86265 0.91972 1.19901 0.94373 0.96233 0.95566 1.67750 1.31277 1.00545 1.14068 1.23472 0.98937 0.98936 0.97121 0.93042 0.80460 0.92165 0.90457 0.90912 0.91266 0.75151 0.82583 0.83065 0.83823 0.82238 0.80518 0.90310 0.91545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.25 13.97 55.49 0.78 -28.48 16 2 C 0.00 0.11 5.50 -17.43 -0.10 0.02 16 3 Si 0.88 22.11 27.73 -169.99 -4.71 17.39 16 4 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 5 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 6 H -0.28 -6.52 6.52 56.52 0.37 -6.15 16 7 C -0.25 -6.92 10.45 -15.06 -0.16 -7.08 16 8 H 0.09 2.70 8.06 -52.48 -0.42 2.28 16 9 N -0.74 -17.13 5.20 -52.63 -0.27 -17.41 16 10 C 0.17 3.13 4.48 -67.11 -0.30 2.83 16 11 H 0.08 1.56 8.10 -51.93 -0.42 1.14 16 12 C -0.16 -2.51 7.43 -25.92 -0.19 -2.70 16 13 C -0.13 -1.57 3.75 -89.81 -0.34 -1.91 16 14 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 15 C 0.13 1.56 5.51 -4.04 -0.02 1.53 16 16 N -0.70 -7.90 5.54 -61.11 -0.34 -8.24 16 17 C 0.56 6.95 7.81 -12.13 -0.09 6.85 16 18 O -0.53 -7.93 16.28 5.36 0.09 -7.84 16 19 C 0.12 1.26 6.75 -82.91 -0.56 0.70 16 20 C -0.11 -0.89 9.54 -39.39 -0.38 -1.26 16 21 C -0.07 -0.42 9.93 -39.32 -0.39 -0.81 16 22 C -0.06 -0.49 5.75 -106.70 -0.61 -1.11 16 23 C -0.15 -0.83 9.88 -39.43 -0.39 -1.22 16 24 C 0.08 0.53 11.07 -17.94 -0.20 0.33 16 25 N -0.48 -4.06 10.28 -13.05 -0.13 -4.19 16 26 C 0.18 1.49 11.26 -16.86 -0.19 1.30 16 27 C 0.07 0.60 6.62 -84.88 -0.56 0.04 16 28 N -0.42 -4.27 9.49 -7.51 -0.07 -4.34 16 29 C -0.14 -2.09 7.39 -25.92 -0.19 -2.28 16 30 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 31 H 0.36 8.32 5.78 -40.82 -0.24 8.08 16 32 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.08 1.30 7.90 -51.93 -0.41 0.89 16 34 H 0.07 0.98 7.84 -51.93 -0.41 0.57 16 35 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.41 4.12 7.77 -40.82 -0.32 3.80 16 37 H 0.16 1.16 7.60 -52.49 -0.40 0.76 16 38 H 0.15 0.45 8.06 -52.49 -0.42 0.03 16 39 H 0.14 0.36 8.06 -52.49 -0.42 -0.06 16 40 H 0.16 0.56 8.06 -52.49 -0.42 0.14 16 41 H 0.18 1.14 8.06 -52.49 -0.42 0.72 16 42 H 0.08 1.15 8.08 -51.93 -0.42 0.74 16 43 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 366.61 15.07 5.52 5.52 Total: -1.00 -34.30 366.61 -9.40 -43.70 By element: Atomic # 1 Polarization: 14.23 SS G_CDS: -5.58 Total: 8.65 kcal Atomic # 6 Polarization: -0.09 SS G_CDS: -4.67 Total: -4.77 kcal Atomic # 7 Polarization: -62.61 SS G_CDS: -0.04 Total: -62.65 kcal Atomic # 8 Polarization: -7.93 SS G_CDS: 0.09 Total: -7.84 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -4.71 Total: 17.39 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -34.30 -9.40 -43.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086150018.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.695 kcal (2) G-P(sol) polarization free energy of solvation -34.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.696 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds