Wall clock time and date at job start Tue Mar 31 2020 14:50:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86798 * 120.00211 * 2 1 4 4 H 1.48506 * 109.47297 * 89.99752 * 3 2 1 5 5 H 1.48503 * 109.47261 * 329.99933 * 3 2 1 6 6 H 1.48500 * 109.47454 * 209.99926 * 3 2 1 7 7 C 1.38817 * 120.00154 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99635 * 359.97438 * 7 2 1 9 9 N 1.36932 * 120.00011 * 180.02562 * 7 2 1 10 10 C 1.46499 * 119.99549 * 179.97438 * 9 7 2 11 11 H 1.08999 * 112.85089 * 336.19394 * 10 9 7 12 12 C 1.53781 * 113.61311 * 107.50716 * 10 9 7 13 13 C 1.53784 * 87.08032 * 139.97759 * 12 10 9 14 14 H 1.09003 * 113.69124 * 89.12928 * 13 12 10 15 15 C 1.52998 * 113.61159 * 220.01306 * 13 12 10 16 16 N 1.46499 * 109.47562 * 272.49884 * 15 13 12 17 17 C 1.34769 * 120.00181 * 180.02562 * 16 15 13 18 18 O 1.21502 * 120.00315 * 359.97438 * 17 16 15 19 19 C 1.48284 * 120.00214 * 179.97438 * 17 16 15 20 20 C 1.40371 * 119.19179 * 179.72811 * 19 17 16 21 21 C 1.36554 * 119.82756 * 179.78222 * 20 19 17 22 22 C 1.40551 * 118.05895 * 0.45629 * 21 20 19 23 23 C 1.40520 * 122.20970 * 179.79102 * 22 21 20 24 24 C 1.36263 * 118.68276 * 180.02562 * 23 22 21 25 25 N 1.32586 * 121.80402 * 359.97438 * 24 23 22 26 26 C 1.31122 * 122.87590 * 0.02562 * 25 24 23 27 27 C 1.40856 * 119.95828 * 359.97438 * 26 25 24 28 28 N 1.31894 * 119.18519 * 359.97438 * 19 17 16 29 29 C 1.53775 * 87.08376 * 334.56706 * 13 12 10 30 30 H 0.96998 * 119.99442 * 359.97438 * 1 2 3 31 31 H 0.96993 * 120.00149 * 359.97438 * 9 7 2 32 32 H 1.09001 * 113.61109 * 254.52603 * 12 10 9 33 33 H 1.08996 * 113.61745 * 25.42627 * 12 10 9 34 34 H 1.09001 * 109.47095 * 32.50102 * 15 13 12 35 35 H 1.09006 * 109.47009 * 152.49882 * 15 13 12 36 36 H 0.97000 * 119.99679 * 0.02562 * 16 15 13 37 37 H 1.08002 * 120.08450 * 0.02562 * 20 19 17 38 38 H 1.07992 * 120.96991 * 180.22237 * 21 20 19 39 39 H 1.07999 * 120.65783 * 359.97166 * 23 22 21 40 40 H 1.07998 * 119.09377 * 180.02562 * 24 23 22 41 41 H 1.08002 * 120.01628 * 180.02562 * 26 25 24 42 42 H 1.09004 * 113.61073 * 270.89043 * 29 13 12 43 43 H 1.09000 * 113.61731 * 139.98178 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 1.4001 5 1 1.4477 2.6527 -0.7001 6 1 3.5478 1.4401 -0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 1.4703 -2.1375 -0.0005 9 7 3.3796 -1.2021 0.0000 10 6 4.1121 -2.4709 0.0000 11 1 3.5276 -3.2970 0.4050 12 6 4.7876 -2.7922 -1.3436 13 6 5.9847 -3.3092 -0.5284 14 1 5.9142 -4.3654 -0.2685 15 6 7.3418 -2.9342 -1.1273 16 7 7.7446 -3.9529 -2.1000 17 6 8.9147 -3.8314 -2.7576 18 8 9.6353 -2.8767 -2.5441 19 6 9.3228 -4.8627 -3.7418 20 6 10.5423 -4.7162 -4.4213 21 6 10.9329 -5.6605 -5.3270 22 6 10.0787 -6.7537 -5.5524 23 6 10.3920 -7.7728 -6.4677 24 6 9.5111 -8.7996 -6.6301 25 7 8.3746 -8.8594 -5.9498 26 6 8.0167 -7.9456 -5.0802 27 6 8.8551 -6.8405 -4.8357 28 7 8.5285 -5.8927 -3.9608 29 6 5.5258 -2.3661 0.5961 30 1 -0.4849 0.8401 0.0004 31 1 3.8646 -0.3622 0.0004 32 1 4.2788 -3.5698 -1.9132 33 1 5.0147 -1.9088 -1.9404 34 1 7.2648 -1.9673 -1.6246 35 1 8.0859 -2.8760 -0.3329 36 1 7.1692 -4.7149 -2.2708 37 1 11.1719 -3.8608 -4.2253 38 1 11.8690 -5.5681 -5.8575 39 1 11.3124 -7.7424 -7.0319 40 1 9.7454 -9.5866 -7.3315 41 1 7.0799 -8.0407 -4.5512 42 1 5.9546 -1.3661 0.5295 43 1 5.6129 -2.7996 1.5924 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086150018.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:50:05 Heat of formation + Delta-G solvation = 42.538323 kcal Electronic energy + Delta-G solvation = -25607.211565 eV Core-core repulsion = 21845.400102 eV Total energy + Delta-G solvation = -3761.811463 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.39747 -40.95655 -39.94937 -38.77520 -36.22281 -35.24160 -34.75483 -32.84767 -32.61815 -31.58502 -29.06634 -26.69408 -26.46389 -25.65153 -25.13489 -23.76958 -22.57478 -22.07974 -20.89556 -19.73933 -19.36129 -19.03323 -18.54703 -17.35094 -17.09666 -16.71851 -16.61917 -16.11696 -15.93980 -15.93347 -15.65365 -15.32238 -15.09775 -14.74096 -14.54888 -14.33405 -14.13432 -13.96331 -13.67058 -13.24736 -13.17563 -13.11893 -13.05327 -12.70723 -12.14737 -11.96828 -11.95310 -11.83292 -11.65356 -11.52807 -11.14083 -10.91311 -10.83440 -10.55851 -10.51622 -10.14002 -9.53439 -9.26153 -8.02382 -5.34666 -1.08691 -0.57503 0.66501 1.30343 1.37742 1.40618 1.47759 1.92735 2.15922 2.48280 2.74830 2.95623 3.27777 3.30796 3.42949 3.50341 3.59112 3.60708 3.69220 3.74062 3.86823 4.05260 4.08950 4.26232 4.28041 4.37682 4.49257 4.54888 4.61179 4.68909 4.72930 4.82254 4.95488 4.97277 5.02901 5.04056 5.20340 5.23797 5.29082 5.39205 5.49139 5.65012 5.78769 6.19647 6.23603 6.50470 6.84294 7.01360 7.08567 7.86883 8.04808 9.19192 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.019591 B = 0.002123 C = 0.002010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1428.911670 B =13182.957400 C =13926.829052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.985 5.985 2 C -0.068 4.068 3 Si 0.955 3.045 4 H -0.277 1.277 5 H -0.298 1.298 6 H -0.254 1.254 7 C -0.231 4.231 8 H 0.058 0.942 9 N -0.744 5.744 10 C 0.146 3.854 11 H 0.078 0.922 12 C -0.156 4.156 13 C -0.099 4.099 14 H 0.117 0.883 15 C 0.134 3.866 16 N -0.695 5.695 17 C 0.563 3.437 18 O -0.563 6.563 19 C 0.103 3.897 20 C -0.121 4.121 21 C -0.046 4.046 22 C -0.078 4.078 23 C -0.134 4.134 24 C 0.071 3.929 25 N -0.493 5.493 26 C 0.164 3.836 27 C 0.045 3.955 28 N -0.436 5.436 29 C -0.133 4.133 30 H 0.257 0.743 31 H 0.365 0.635 32 H 0.062 0.938 33 H 0.065 0.935 34 H 0.059 0.941 35 H 0.077 0.923 36 H 0.419 0.581 37 H 0.161 0.839 38 H 0.192 0.808 39 H 0.183 0.817 40 H 0.188 0.812 41 H 0.184 0.816 42 H 0.080 0.920 43 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.317 -18.085 -13.147 36.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.635 5.635 2 C -0.260 4.260 3 Si 0.782 3.218 4 H -0.203 1.203 5 H -0.225 1.225 6 H -0.178 1.178 7 C -0.362 4.362 8 H 0.076 0.924 9 N -0.385 5.385 10 C 0.037 3.963 11 H 0.096 0.904 12 C -0.197 4.197 13 C -0.118 4.118 14 H 0.135 0.865 15 C 0.011 3.989 16 N -0.345 5.345 17 C 0.348 3.652 18 O -0.441 6.441 19 C -0.051 4.051 20 C -0.143 4.143 21 C -0.071 4.071 22 C -0.085 4.085 23 C -0.154 4.154 24 C -0.070 4.070 25 N -0.202 5.202 26 C -0.010 4.010 27 C -0.081 4.081 28 N -0.149 5.149 29 C -0.172 4.172 30 H 0.066 0.934 31 H 0.199 0.801 32 H 0.081 0.919 33 H 0.084 0.916 34 H 0.077 0.923 35 H 0.095 0.905 36 H 0.256 0.744 37 H 0.179 0.821 38 H 0.209 0.791 39 H 0.200 0.800 40 H 0.205 0.795 41 H 0.200 0.800 42 H 0.098 0.902 43 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 28.297 -18.396 -12.793 36.095 hybrid contribution 0.585 1.736 -0.249 1.849 sum 28.882 -16.660 -13.042 35.803 Atomic orbital electron populations 1.69887 1.07109 1.26583 1.59950 1.25533 0.96155 1.01301 1.02962 0.85408 0.78543 0.79704 0.78103 1.20331 1.22465 1.17833 1.19130 0.82884 0.93432 1.40744 0.92352 1.42782 1.02409 1.04051 1.89213 1.21929 0.90980 0.87961 0.95456 0.90442 1.23759 0.97105 1.00361 0.98473 1.22477 0.91688 1.00887 0.96777 0.86516 1.21420 0.95802 0.90657 0.91012 1.45866 1.20449 1.27304 1.40914 1.18149 0.81736 0.84676 0.80624 1.90777 1.54025 1.32904 1.66416 1.21383 0.93416 0.93223 0.97088 1.22027 0.95658 1.01176 0.95441 1.21863 0.99974 0.90198 0.95088 1.19434 0.94804 0.97182 0.97039 1.22316 1.02603 0.92898 0.97554 1.22932 0.88642 0.98423 0.97029 1.67564 1.18808 1.27414 1.06445 1.23430 0.98527 0.86432 0.92570 1.20120 0.95582 0.96302 0.96084 1.67641 1.31663 1.00813 1.14784 1.23348 0.95485 0.99798 0.98565 0.93435 0.80129 0.91947 0.91628 0.92255 0.90501 0.74390 0.82104 0.79072 0.80009 0.79488 0.79953 0.90150 0.89770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -63.74 13.97 21.65 0.30 -63.44 16 2 C -0.07 -4.07 5.50 84.86 0.47 -3.60 16 3 Si 0.95 46.08 27.73 68.60 1.90 47.99 16 4 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 5 H -0.30 -14.61 7.11 99.48 0.71 -13.91 16 6 H -0.25 -11.11 6.52 99.48 0.65 -10.46 16 7 C -0.23 -13.17 10.45 84.04 0.88 -12.30 16 8 H 0.06 3.63 8.06 -2.91 -0.02 3.61 16 9 N -0.74 -34.35 5.20 -320.44 -1.67 -36.01 16 10 C 0.15 5.20 4.48 45.52 0.20 5.40 16 11 H 0.08 2.86 8.10 -2.39 -0.02 2.84 16 12 C -0.16 -4.72 7.43 31.12 0.23 -4.49 16 13 C -0.10 -2.24 3.75 -10.27 -0.04 -2.28 16 14 H 0.12 2.17 8.14 -2.39 -0.02 2.15 16 15 C 0.13 3.03 5.51 86.38 0.48 3.50 16 16 N -0.69 -15.03 5.54 -465.55 -2.58 -17.61 16 17 C 0.56 13.64 7.81 86.92 0.68 14.32 16 18 O -0.56 -16.67 16.28 -3.72 -0.06 -16.73 16 19 C 0.10 2.10 6.75 42.33 0.29 2.38 16 20 C -0.12 -1.85 9.54 22.40 0.21 -1.63 16 21 C -0.05 -0.45 9.93 22.44 0.22 -0.23 16 22 C -0.08 -1.00 5.75 -21.21 -0.12 -1.12 16 23 C -0.13 -1.02 9.88 22.37 0.22 -0.80 16 24 C 0.07 0.71 11.07 84.12 0.93 1.65 16 25 N -0.49 -7.81 10.28 -195.20 -2.01 -9.82 16 26 C 0.16 2.66 11.26 85.44 0.96 3.62 16 27 C 0.04 0.79 6.62 40.55 0.27 1.05 16 28 N -0.44 -8.61 9.49 -177.67 -1.69 -10.30 16 29 C -0.13 -3.53 7.39 31.12 0.23 -3.30 16 30 H 0.26 15.86 8.31 -92.71 -0.77 15.09 16 31 H 0.37 16.29 5.78 -92.71 -0.54 15.76 16 32 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 33 H 0.07 2.16 7.90 -2.39 -0.02 2.14 16 34 H 0.06 1.53 7.84 -2.39 -0.02 1.51 16 35 H 0.08 1.67 8.14 -2.38 -0.02 1.65 16 36 H 0.42 7.94 7.77 -92.71 -0.72 7.22 16 37 H 0.16 2.21 7.60 -2.91 -0.02 2.19 16 38 H 0.19 0.23 8.06 -2.91 -0.02 0.21 16 39 H 0.18 -0.06 8.06 -2.91 -0.02 -0.08 16 40 H 0.19 0.67 8.06 -2.91 -0.02 0.65 16 41 H 0.18 2.42 8.06 -2.91 -0.02 2.40 16 42 H 0.08 2.17 8.08 -2.38 -0.02 2.15 16 43 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 Total: -1.00 -77.20 366.61 0.05 -77.14 By element: Atomic # 1 Polarization: 26.86 SS G_CDS: -0.26 Total: 26.60 kcal Atomic # 6 Polarization: -3.92 SS G_CDS: 6.11 Total: 2.19 kcal Atomic # 7 Polarization: -129.55 SS G_CDS: -7.64 Total: -137.19 kcal Atomic # 8 Polarization: -16.67 SS G_CDS: -0.06 Total: -16.73 kcal Atomic # 14 Polarization: 46.08 SS G_CDS: 1.90 Total: 47.99 kcal Total: -77.20 0.05 -77.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086150018.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.681 kcal (2) G-P(sol) polarization free energy of solvation -77.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.143 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds