Wall clock time and date at job start Tue Mar 31 2020 14:58:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 119.99628 * 2 1 4 4 H 1.48494 * 109.47115 * 269.99662 * 3 2 1 5 5 H 1.48501 * 109.47246 * 29.99676 * 3 2 1 6 6 H 1.48504 * 109.47105 * 149.99653 * 3 2 1 7 7 C 1.38804 * 120.00369 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99676 * 0.02562 * 7 2 1 9 9 N 1.36930 * 120.00359 * 180.02562 * 7 2 1 10 10 C 1.46497 * 120.00433 * 180.27342 * 9 7 2 11 11 H 1.08996 * 112.85076 * 335.92607 * 10 9 7 12 12 C 1.53790 * 113.61400 * 107.22586 * 10 9 7 13 13 C 1.53787 * 87.07786 * 139.98341 * 12 10 9 14 14 H 1.08999 * 113.68998 * 89.13074 * 13 12 10 15 15 C 1.52996 * 113.61108 * 220.01707 * 13 12 10 16 16 N 1.46502 * 109.47560 * 272.50047 * 15 13 12 17 17 C 1.34772 * 120.00205 * 180.02562 * 16 15 13 18 18 O 1.21537 * 120.00099 * 359.97438 * 17 16 15 19 19 C 1.48002 * 120.00198 * 180.02562 * 17 16 15 20 20 C 1.38890 * 121.16760 * 354.23852 * 19 17 16 21 21 C 1.39356 * 119.67220 * 179.69302 * 20 19 17 22 22 N 1.31097 * 121.89758 * 0.62325 * 21 20 19 23 23 C 1.33278 * 121.62025 * 359.68130 * 22 21 20 24 24 C 1.40846 * 121.91501 * 180.02562 * 23 22 21 25 25 C 1.36169 * 118.76724 * 179.97438 * 24 23 22 26 26 N 1.32531 * 121.96032 * 359.97438 * 25 24 23 27 27 C 1.31333 * 122.60891 * 359.97438 * 26 25 24 28 28 C 1.40089 * 119.87420 * 0.04145 * 27 26 25 29 29 C 1.53774 * 113.61980 * 204.72441 * 10 9 7 30 30 H 0.96999 * 120.00553 * 0.02562 * 1 2 3 31 31 H 0.97001 * 119.99795 * 0.02562 * 9 7 2 32 32 H 1.08992 * 113.61875 * 254.53222 * 12 10 9 33 33 H 1.08998 * 113.61215 * 25.43717 * 12 10 9 34 34 H 1.09000 * 109.47333 * 32.50625 * 15 13 12 35 35 H 1.09004 * 109.46763 * 152.50055 * 15 13 12 36 36 H 0.96998 * 119.99654 * 0.02562 * 16 15 13 37 37 H 1.08001 * 120.16638 * 359.97438 * 20 19 17 38 38 H 1.08002 * 119.04743 * 180.28278 * 21 20 19 39 39 H 1.07994 * 120.61567 * 359.94697 * 24 23 22 40 40 H 1.07998 * 119.01546 * 179.97438 * 25 24 23 41 41 H 1.07998 * 120.06812 * 179.97438 * 27 26 25 42 42 H 1.09005 * 113.61839 * 334.57028 * 29 10 9 43 43 H 1.09004 * 113.61607 * 105.38637 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4474 2.6527 0.7000 6 1 3.5476 1.4403 0.7001 7 6 2.0102 -1.2020 0.0005 8 1 1.4702 -2.1374 0.0005 9 7 3.3795 -1.2020 0.0011 10 6 4.1121 -2.4707 -0.0044 11 1 3.5295 -3.2977 0.4013 12 6 4.7821 -2.7893 -1.3515 13 6 5.9826 -3.3079 -0.5423 14 1 5.9132 -4.3646 -0.2841 15 6 7.3371 -2.9316 -1.1461 16 7 7.7360 -3.9484 -2.1225 17 6 8.9033 -3.8254 -2.7848 18 8 9.6249 -2.8708 -2.5724 19 6 9.3060 -4.8523 -3.7716 20 6 8.5601 -6.0104 -3.9490 21 6 8.9644 -6.9538 -4.8916 22 7 10.0439 -6.7895 -5.6171 23 6 10.8097 -5.7056 -5.4949 24 6 11.9704 -5.5225 -6.2714 25 6 12.7055 -4.3900 -6.0943 26 7 12.3601 -3.4597 -5.2158 27 6 11.2916 -3.5626 -4.4592 28 6 10.4679 -4.6908 -4.5647 29 6 5.5283 -2.3669 0.5859 30 1 -0.4851 0.8400 -0.0004 31 1 3.8645 -0.3620 0.0014 32 1 4.2710 -3.5658 -1.9206 33 1 5.0066 -1.9048 -1.9476 34 1 7.2580 -1.9637 -1.6411 35 1 8.0845 -2.8749 -0.3547 36 1 7.1599 -4.7100 -2.2924 37 1 7.6686 -6.1769 -3.3625 38 1 8.3743 -7.8486 -5.0245 39 1 12.2720 -6.2666 -6.9936 40 1 13.5965 -4.2457 -6.6873 41 1 11.0489 -2.7795 -3.7562 42 1 5.9569 -1.3669 0.5196 43 1 5.6192 -2.8011 1.5816 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086159274.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:58:58 Heat of formation + Delta-G solvation = 72.621708 kcal Electronic energy + Delta-G solvation = -25862.437337 eV Core-core repulsion = 22101.930387 eV Total energy + Delta-G solvation = -3760.506950 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.83212 -40.00394 -38.73159 -38.41321 -35.17090 -34.09266 -33.41675 -32.00226 -31.11568 -30.66193 -28.02366 -25.75105 -25.30276 -24.63149 -24.07754 -23.27107 -21.36612 -21.07913 -19.56304 -18.94004 -18.44633 -17.77605 -17.47950 -16.53262 -16.32462 -15.88186 -15.50038 -15.21884 -15.06247 -14.84273 -14.69464 -14.59107 -14.08005 -13.75830 -13.52907 -13.42436 -13.19925 -12.73860 -12.46842 -12.32950 -12.08183 -11.74587 -11.69023 -11.10108 -10.97458 -10.86746 -10.58032 -10.38143 -10.20694 -10.14938 -9.94358 -9.83368 -9.68537 -9.61179 -9.41087 -8.96470 -8.95005 -7.33379 -5.83578 -3.19641 -0.54192 0.18302 1.09132 2.31627 2.58759 2.73314 3.33490 3.36470 3.41973 3.61588 3.63073 3.90592 3.99357 4.06345 4.19733 4.23242 4.53344 4.66499 4.69959 4.72975 4.81915 4.93681 4.98240 5.07271 5.24843 5.26536 5.33270 5.42578 5.46576 5.53191 5.59003 5.69605 5.72180 5.86033 5.96449 6.08123 6.11135 6.17770 6.24136 6.39673 6.56910 6.88011 7.01867 7.20305 7.54134 7.71352 7.92101 8.36022 9.13579 9.86305 10.05594 11.34471 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.022130 B = 0.002145 C = 0.002069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.924566 B =13050.590296 C =13531.184454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.005 3.995 3 Si 0.884 3.116 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.276 1.276 7 C -0.250 4.250 8 H 0.091 0.909 9 N -0.737 5.737 10 C 0.172 3.828 11 H 0.084 0.916 12 C -0.162 4.162 13 C -0.128 4.128 14 H 0.092 0.908 15 C 0.129 3.871 16 N -0.709 5.709 17 C 0.556 3.444 18 O -0.524 6.524 19 C -0.043 4.043 20 C -0.144 4.144 21 C 0.150 3.850 22 N -0.462 5.462 23 C 0.153 3.847 24 C -0.150 4.150 25 C 0.094 3.906 26 N -0.487 5.487 27 C 0.161 3.839 28 C -0.134 4.134 29 C -0.145 4.145 30 H 0.260 0.740 31 H 0.363 0.637 32 H 0.059 0.941 33 H 0.078 0.922 34 H 0.075 0.925 35 H 0.071 0.929 36 H 0.403 0.597 37 H 0.149 0.851 38 H 0.173 0.827 39 H 0.148 0.852 40 H 0.161 0.839 41 H 0.200 0.800 42 H 0.079 0.921 43 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.726 -15.704 -9.268 29.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.191 4.191 3 Si 0.714 3.286 4 H -0.210 1.210 5 H -0.217 1.217 6 H -0.203 1.203 7 C -0.380 4.380 8 H 0.109 0.891 9 N -0.376 5.376 10 C 0.061 3.939 11 H 0.102 0.898 12 C -0.203 4.203 13 C -0.147 4.147 14 H 0.111 0.889 15 C 0.007 3.993 16 N -0.359 5.359 17 C 0.342 3.658 18 O -0.402 6.402 19 C -0.057 4.057 20 C -0.165 4.165 21 C -0.024 4.024 22 N -0.171 5.171 23 C 0.027 3.973 24 C -0.171 4.171 25 C -0.050 4.050 26 N -0.195 5.195 27 C -0.010 4.010 28 C -0.139 4.139 29 C -0.185 4.185 30 H 0.070 0.930 31 H 0.196 0.804 32 H 0.078 0.922 33 H 0.096 0.904 34 H 0.093 0.907 35 H 0.090 0.910 36 H 0.238 0.762 37 H 0.167 0.833 38 H 0.190 0.810 39 H 0.165 0.835 40 H 0.178 0.822 41 H 0.216 0.784 42 H 0.098 0.902 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 23.905 -14.923 -9.751 29.820 hybrid contribution -0.605 0.543 0.305 0.868 sum 23.300 -14.380 -9.446 28.964 Atomic orbital electron populations 1.69696 1.05137 1.25948 1.57134 1.24703 0.95270 0.97318 1.01799 0.86558 0.79241 0.84929 0.77842 1.21036 1.21656 1.20252 1.19119 0.80669 0.94754 1.43441 0.89138 1.42758 1.04108 1.02005 1.88757 1.21493 0.89513 0.90130 0.92794 0.89773 1.23947 0.95843 1.00582 0.99940 1.22662 0.92856 1.00064 0.99164 0.88940 1.21587 0.96132 0.91001 0.90600 1.45955 1.20586 1.27567 1.41819 1.18032 0.81864 0.85207 0.80730 1.90628 1.52099 1.32226 1.65243 1.20373 0.94503 0.95049 0.95758 1.22546 1.00570 0.93887 0.99488 1.23164 0.91838 0.98067 0.89329 1.67868 1.04977 1.20777 1.23433 1.18927 0.94882 0.89631 0.93836 1.21730 0.94235 1.00128 1.00958 1.22447 0.98864 0.89140 0.94547 1.67755 1.16745 1.29596 1.05393 1.24481 0.87082 0.95405 0.94066 1.19676 0.97154 0.98363 0.98727 1.23471 0.98948 0.98970 0.97063 0.92980 0.80423 0.92208 0.90360 0.90662 0.91030 0.76168 0.83311 0.80999 0.83454 0.82182 0.78377 0.90242 0.91511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.73 13.97 55.49 0.78 -27.96 16 2 C 0.01 0.15 5.50 -17.44 -0.10 0.05 16 3 Si 0.88 21.69 27.74 -169.99 -4.71 16.97 16 4 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 5 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 6 H -0.28 -6.35 6.52 56.52 0.37 -5.99 16 7 C -0.25 -6.81 10.45 -15.07 -0.16 -6.97 16 8 H 0.09 2.63 8.06 -52.49 -0.42 2.21 16 9 N -0.74 -16.53 5.20 -52.64 -0.27 -16.80 16 10 C 0.17 2.95 4.48 -67.12 -0.30 2.65 16 11 H 0.08 1.46 8.10 -51.93 -0.42 1.04 16 12 C -0.16 -2.27 7.43 -25.91 -0.19 -2.46 16 13 C -0.13 -1.36 3.75 -89.81 -0.34 -1.70 16 14 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 15 C 0.13 1.33 5.51 -4.04 -0.02 1.30 16 16 N -0.71 -6.11 5.51 -61.20 -0.34 -6.44 16 17 C 0.56 5.84 7.76 -12.26 -0.10 5.74 16 18 O -0.52 -7.03 13.61 5.33 0.07 -6.96 16 19 C -0.04 -0.40 5.93 -104.37 -0.62 -1.02 16 20 C -0.14 -0.90 9.60 -38.92 -0.37 -1.27 16 21 C 0.15 0.97 11.14 -17.45 -0.19 0.77 16 22 N -0.46 -4.32 10.33 -10.95 -0.11 -4.43 16 23 C 0.15 1.58 6.63 -84.88 -0.56 1.02 16 24 C -0.15 -1.31 10.08 -39.34 -0.40 -1.71 16 25 C 0.09 0.84 11.06 -17.99 -0.20 0.64 16 26 N -0.49 -5.60 10.31 -13.24 -0.14 -5.73 16 27 C 0.16 1.89 10.52 -17.07 -0.18 1.71 16 28 C -0.13 -1.46 5.77 -106.55 -0.61 -2.07 16 29 C -0.14 -1.93 7.39 -25.93 -0.19 -2.12 16 30 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 31 H 0.36 8.06 5.78 -40.82 -0.24 7.82 16 32 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 33 H 0.08 1.20 7.90 -51.93 -0.41 0.79 16 34 H 0.08 0.89 7.84 -51.93 -0.41 0.48 16 35 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.40 2.37 6.65 -40.82 -0.27 2.10 16 37 H 0.15 0.42 6.56 -52.49 -0.34 0.08 16 38 H 0.17 0.48 8.06 -52.49 -0.42 0.06 16 39 H 0.15 0.95 8.06 -52.49 -0.42 0.53 16 40 H 0.16 0.90 8.06 -52.49 -0.42 0.48 16 41 H 0.20 2.46 5.08 -52.49 -0.27 2.20 16 42 H 0.08 1.10 8.08 -51.93 -0.42 0.68 16 43 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 359.51 15.07 5.42 5.42 Total: -1.00 -34.34 359.51 -9.17 -43.51 By element: Atomic # 1 Polarization: 13.20 SS G_CDS: -5.33 Total: 7.88 kcal Atomic # 6 Polarization: -0.91 SS G_CDS: -4.53 Total: -5.44 kcal Atomic # 7 Polarization: -61.28 SS G_CDS: -0.09 Total: -61.37 kcal Atomic # 8 Polarization: -7.03 SS G_CDS: 0.07 Total: -6.96 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -4.71 Total: 16.97 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -34.34 -9.17 -43.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086159274.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.129 kcal (2) G-P(sol) polarization free energy of solvation -34.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.507 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds